RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 PAK3O75914 559 aaPredicted RBP13.89□□□□□ -0.19
UPF1-213ENST00000601981 USP6P35125 1406 aa13.89□□□□□ -0.19
UPF1-213ENST00000601981 ALS2Q96Q42 1657 aa13.88□□□□□ -0.19
UPF1-213ENST00000601981 MIER1Q8N108 512 aa13.88□□□□□ -0.19
UPF1-213ENST00000601981 SLC12A5Q9H2X9 1139 aa13.88□□□□□ -0.19
UPF1-213ENST00000601981 CPSF1Q10570 1443 aaKnown RBP13.88□□□□□ -0.19
UPF1-213ENST00000601981 ANKRD36BQ8N2N9 1353 aa13.87□□□□□ -0.19
UPF1-213ENST00000601981 COL22A1Q8NFW1 1626 aaPredicted RBP13.87□□□□□ -0.19
UPF1-213ENST00000601981 LMOD2Q6P5Q4 547 aa13.87□□□□□ -0.19
UPF1-213ENST00000601981 NRKQ7Z2Y5 1582 aa13.87□□□□□ -0.19
UPF1-213ENST00000601981 SPATA31A3Q5VYP0 1347 aa13.87□□□□□ -0.19
UPF1-213ENST00000601981 WASHC2AQ641Q2 1341 aa13.87□□□□□ -0.19
UPF1-213ENST00000601981 A0A1W2PP64 1363 aa13.86□□□□□ -0.19
UPF1-213ENST00000601981 CCDC7Q96M83 1385 aa13.86□□□□□ -0.19
UPF1-213ENST00000601981 DDX10Q13206 875 aaKnown RBP13.86□□□□□ -0.19
UPF1-213ENST00000601981 RGS17Q9UGC6 210 aaPredicted RBP13.86□□□□□ -0.19
UPF1-213ENST00000601981 EDC4Q6P2E9 1401 aaKnown RBP13.86□□□□□ -0.19
UPF1-213ENST00000601981 KIF7Q2M1P5 1343 aa13.86□□□□□ -0.19
UPF1-213ENST00000601981 SPATA31A6Q5VVP1 1343 aa13.86□□□□□ -0.19
UPF1-213ENST00000601981 TTC21AQ8NDW8 1320 aa13.86□□□□□ -0.19
UPF1-213ENST00000601981 PNPLA6Q8IY17 1366 aa13.85□□□□□ -0.19
UPF1-213ENST00000601981 CD163L1Q9NR16 1453 aa13.85□□□□□ -0.19
UPF1-213ENST00000601981 KIF20BQ96Q89 1820 aa13.84□□□□□ -0.19
UPF1-213ENST00000601981 HAP1P54257 671 aaPredicted RBP13.83□□□□□ -0.2
UPF1-213ENST00000601981 ABTB2Q8N961 1025 aa13.83□□□□□ -0.2
UPF1-213ENST00000601981 ABCA3Q99758 1704 aa13.82□□□□□ -0.2
UPF1-213ENST00000601981 MARF1Q9Y4F3 1742 aaKnown RBP13.82□□□□□ -0.2
UPF1-213ENST00000601981 C11orf95C9JLR9 678 aaPredicted RBP13.82□□□□□ -0.2
UPF1-213ENST00000601981 NLRP13Q86W25 1043 aa13.82□□□□□ -0.2
UPF1-213ENST00000601981 TTC21BQ7Z4L5 1316 aa13.82□□□□□ -0.2
UPF1-213ENST00000601981 PIK3C2AO00443 1686 aa13.82□□□□□ -0.2
UPF1-213ENST00000601981 SSH2Q76I76 1423 aa13.81□□□□□ -0.2
UPF1-213ENST00000601981 PHRF1Q9P1Y6 1649 aaKnown RBP13.8□□□□□ -0.2
UPF1-213ENST00000601981 USP54Q70EL1 1684 aa13.8□□□□□ -0.2
UPF1-213ENST00000601981 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.8□□□□□ -0.2
UPF1-213ENST00000601981 CRYBG1Q9Y4K1 1723 aa13.8□□□□□ -0.2
UPF1-213ENST00000601981 NLRP6P59044 892 aa13.79□□□□□ -0.2
UPF1-213ENST00000601981 MEX3CQ5U5Q3 659 aaKnown RBP13.79□□□□□ -0.2
UPF1-213ENST00000601981 NSD3Q9BZ95 1437 aa13.79□□□□□ -0.2
UPF1-213ENST00000601981 NUTM2BA6NNL0 878 aaPredicted RBP13.78□□□□□ -0.2
UPF1-213ENST00000601981 NUTM2EB1AL46 878 aaPredicted RBP13.78□□□□□ -0.2
UPF1-213ENST00000601981 NUTM2AQ8IVF1 878 aaPredicted RBP13.78□□□□□ -0.2
UPF1-213ENST00000601981 CGNL1Q0VF96 1302 aa13.78□□□□□ -0.2
UPF1-213ENST00000601981 ANKRD26Q9UPS8 1709 aa13.78□□□□□ -0.2
UPF1-213ENST00000601981 PANK3Q9H999 370 aa13.77□□□□□ -0.21
UPF1-213ENST00000601981 USP31Q70CQ4 1352 aa13.76□□□□□ -0.21
UPF1-213ENST00000601981 PLEKHG5O94827 1062 aa13.76□□□□□ -0.21
UPF1-213ENST00000601981 NUTM2GQ5VZR2 741 aa13.76□□□□□ -0.21
UPF1-213ENST00000601981 POTEAQ6S8J7 498 aa13.76□□□□□ -0.21
UPF1-213ENST00000601981 KCNH5Q8NCM2 988 aa13.76□□□□□ -0.21
UPF1-213ENST00000601981 KNSTRNQ9Y448 316 aa13.76□□□□□ -0.21
UPF1-213ENST00000601981 USP19O94966 1318 aa13.75□□□□□ -0.21
UPF1-213ENST00000601981 ANP32CO43423 234 aa13.75□□□□□ -0.21
UPF1-213ENST00000601981 COG3Q96JB2 828 aa13.75□□□□□ -0.21
UPF1-213ENST00000601981 SLIT3O75094 1523 aa13.74□□□□□ -0.21
UPF1-213ENST00000601981 NSD2O96028 1365 aa13.74□□□□□ -0.21
UPF1-213ENST00000601981 NME9Q86XW9 330 aa13.74□□□□□ -0.21
UPF1-213ENST00000601981 LRP6O75581 1613 aa13.74□□□□□ -0.21
UPF1-213ENST00000601981 COL14A1Q05707 1796 aaKnown RBP13.73□□□□□ -0.21
UPF1-213ENST00000601981 ADAMTS2O95450 1211 aa13.73□□□□□ -0.21
UPF1-213ENST00000601981 CABLES1Q8TDN4 633 aa13.73□□□□□ -0.21
UPF1-213ENST00000601981 CARD14Q9BXL6 1004 aa13.73□□□□□ -0.21
UPF1-213ENST00000601981 LTN1O94822 1766 aa13.73□□□□□ -0.21
UPF1-213ENST00000601981 OVOS2A0A0J9YW53 1432 aa13.73□□□□□ -0.21
UPF1-213ENST00000601981 OVOS2Q6IE36 1432 aa13.73□□□□□ -0.21
UPF1-213ENST00000601981 GCP02774 474 aa13.72□□□□□ -0.21
UPF1-213ENST00000601981 NWD2Q9ULI1 1742 aa13.72□□□□□ -0.21
UPF1-213ENST00000601981 PLCH1Q4KWH8 1693 aa13.72□□□□□ -0.21
UPF1-213ENST00000601981 CCER2I3L3R5 266 aa13.71□□□□□ -0.21
UPF1-213ENST00000601981 FYB1O15117 783 aa13.71□□□□□ -0.21
UPF1-213ENST00000601981 C8orf37Q96NL8 207 aa13.71□□□□□ -0.21
UPF1-213ENST00000601981 GGNBP2Q9H3C7 697 aa13.71□□□□□ -0.21
UPF1-213ENST00000601981 PRDM11Q9NQV5 511 aa13.71□□□□□ -0.21
UPF1-213ENST00000601981 NGLY1Q96IV0 654 aa13.7□□□□□ -0.22
UPF1-213ENST00000601981 CPDO75976 1380 aa13.7□□□□□ -0.22
UPF1-213ENST00000601981 MAP2P11137 1827 aaKnown RBP13.69□□□□□ -0.22
UPF1-213ENST00000601981 SOX12O15370 315 aa13.69□□□□□ -0.22
UPF1-213ENST00000601981 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.69□□□□□ -0.22
UPF1-213ENST00000601981 KIAA0232Q92628 1395 aa13.69□□□□□ -0.22
UPF1-213ENST00000601981 NFAT5O94916 1531 aa13.69□□□□□ -0.22
UPF1-213ENST00000601981 ABCC6O95255 1503 aa13.69□□□□□ -0.22
UPF1-213ENST00000601981 ZC3H6P61129 1189 aaKnown RBP13.68□□□□□ -0.22
UPF1-213ENST00000601981 ZRANB1Q9UGI0 708 aa13.68□□□□□ -0.22
UPF1-213ENST00000601981 ZBTB7CA1YPR0 619 aa13.67□□□□□ -0.22
UPF1-213ENST00000601981 ZNF772Q68DY9 489 aaPredicted RBP13.67□□□□□ -0.22
UPF1-213ENST00000601981 NPC1L1Q9UHC9 1359 aa13.67□□□□□ -0.22
UPF1-213ENST00000601981 MORC1Q86VD1 984 aa13.66□□□□□ -0.22
UPF1-213ENST00000601981 RGPD5Q99666 1765 aa13.66□□□□□ -0.22
UPF1-213ENST00000601981 AFF2P51816 1311 aa13.65□□□□□ -0.22
UPF1-213ENST00000601981 PER1O15534 1290 aaPredicted RBP13.65□□□□□ -0.22
UPF1-213ENST00000601981 AMER1Q5JTC6 1135 aaPredicted RBP13.65□□□□□ -0.22
UPF1-213ENST00000601981 LMO7Q8WWI1 1683 aa13.65□□□□□ -0.22
UPF1-213ENST00000601981 SLIT2O94813 1529 aa13.64□□□□□ -0.23
UPF1-213ENST00000601981 AATKQ6ZMQ8 1374 aa13.64□□□□□ -0.23
UPF1-213ENST00000601981 FAM83GA6ND36 823 aa13.64□□□□□ -0.23
UPF1-213ENST00000601981 CENPBP07199 599 aaPredicted RBP13.64□□□□□ -0.23
UPF1-213ENST00000601981 ARHGEF25Q86VW2 580 aa13.64□□□□□ -0.23
UPF1-213ENST00000601981 FNBP4Q8N3X1 1017 aaPredicted RBP13.64□□□□□ -0.23
UPF1-213ENST00000601981 USP21Q9UK80 565 aa13.64□□□□□ -0.23
UPF1-213ENST00000601981 NRAPQ86VF7 1730 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 117.3 ms