RNA–Protein interactions for RNA: ENST00000598969.5

COPE-208, Transcript of coatomer protein complex subunit epsilon, human

TSL 5

Gene COPE, Length 1,770 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPE-208	ENST00000598969	KIF20B	Q96Q89	1820 aa		28.44	■■■□□ 2.14
COPE-208	ENST00000598969	NME9	Q86XW9	330 aa		28.43	■■■□□ 2.14
COPE-208	ENST00000598969	GGNBP2	Q9H3C7	697 aa		28.43	■■■□□ 2.14
COPE-208	ENST00000598969	CCER2	I3L3R5	266 aa		28.42	■■■□□ 2.14
COPE-208	ENST00000598969	PSME1	Q06323	249 aa		28.42	■■■□□ 2.14
COPE-208	ENST00000598969	BRD4	O60885	1362 aa	Predicted RBP	28.41	■■■□□ 2.14
COPE-208	ENST00000598969	TTC21A	Q8NDW8	1320 aa		28.41	■■■□□ 2.14
COPE-208	ENST00000598969	ANKRD26	Q9UPS8	1709 aa		28.4	■■■□□ 2.14
COPE-208	ENST00000598969	DDX17	Q92841	729 aa	Known RBP	28.39	■■■□□ 2.14
COPE-208	ENST00000598969	ZRANB1	Q9UGI0	708 aa		28.39	■■■□□ 2.14
COPE-208	ENST00000598969	XPC	Q01831	940 aa	Predicted RBP	28.39	■■■□□ 2.13
COPE-208	ENST00000598969	IQSEC2	Q5JU85	1478 aa		28.38	■■■□□ 2.13
COPE-208	ENST00000598969	MORC1	Q86VD1	984 aa		28.38	■■■□□ 2.13
COPE-208	ENST00000598969	MYBBP1A	Q9BQG0	1328 aa	Known RBP	28.37	■■■□□ 2.13
COPE-208	ENST00000598969	KRT28	Q7Z3Y7	464 aa		28.37	■■■□□ 2.13
COPE-208	ENST00000598969	TRPM3	Q9HCF6	1732 aa	Predicted RBP	28.37	■■■□□ 2.13
COPE-208	ENST00000598969	NPHP3	Q7Z494	1330 aa		28.37	■■■□□ 2.13
COPE-208	ENST00000598969	PIK3C2A	O00443	1686 aa		28.36	■■■□□ 2.13
COPE-208	ENST00000598969	CERK	Q8TCT0	537 aa		28.34	■■■□□ 2.13
COPE-208	ENST00000598969	PXDN	Q92626	1479 aa		28.34	■■■□□ 2.13
COPE-208	ENST00000598969	PAK3	O75914	559 aa	Predicted RBP	28.34	■■■□□ 2.13
COPE-208	ENST00000598969	OVOS2	A0A0J9YW53	1432 aa		28.33	■■■□□ 2.13
COPE-208	ENST00000598969	OVOS2	Q6IE36	1432 aa		28.33	■■■□□ 2.13
COPE-208	ENST00000598969	USP31	Q70CQ4	1352 aa		28.33	■■■□□ 2.13
COPE-208	ENST00000598969	PPP2R1A	P30153	589 aa		28.32	■■■□□ 2.12
COPE-208	ENST00000598969	ROBO1	Q9Y6N7	1651 aa		28.31	■■■□□ 2.12
COPE-208	ENST00000598969	CCDC184	Q52MB2	194 aa		28.31	■■■□□ 2.12
COPE-208	ENST00000598969	COG3	Q96JB2	828 aa		28.31	■■■□□ 2.12
COPE-208	ENST00000598969	TOM1	O60784	492 aa		28.3	■■■□□ 2.12
COPE-208	ENST00000598969	TNNT2	P45379	298 aa	Predicted RBP	28.3	■■■□□ 2.12
COPE-208	ENST00000598969	NHSL1	Q5SYE7	1610 aa		28.3	■■■□□ 2.12
COPE-208	ENST00000598969	ABTB2	Q8N961	1025 aa		28.29	■■■□□ 2.12
COPE-208	ENST00000598969	SBNO1	A3KN83	1393 aa		28.29	■■■□□ 2.12
COPE-208	ENST00000598969	NLRP13	Q86W25	1043 aa		28.28	■■■□□ 2.12
COPE-208	ENST00000598969	YTHDC1	Q96MU7	727 aa	Known RBP	28.28	■■■□□ 2.12
COPE-208	ENST00000598969	USP54	Q70EL1	1684 aa		28.28	■■■□□ 2.12
COPE-208	ENST00000598969	SOS2	Q07890	1332 aa	Predicted RBP	28.28	■■■□□ 2.12
COPE-208	ENST00000598969	MARF1	Q9Y4F3	1742 aa	Known RBP	28.28	■■■□□ 2.12
COPE-208	ENST00000598969	ALS2	Q96Q42	1657 aa		28.27	■■■□□ 2.12
COPE-208	ENST00000598969	NLRP6	P59044	892 aa		28.27	■■■□□ 2.12
COPE-208	ENST00000598969	NUTM2G	Q5VZR2	741 aa		28.27	■■■□□ 2.12
COPE-208	ENST00000598969	SCAF1	Q9H7N4	1312 aa	Known RBP	28.26	■■■□□ 2.12
COPE-208	ENST00000598969	UBAP1L	F5GYI3	381 aa		28.25	■■■□□ 2.11
COPE-208	ENST00000598969	FBLN1	P23142	703 aa		28.23	■■■□□ 2.11
COPE-208	ENST00000598969	SPATA31A3	Q5VYP0	1347 aa		28.23	■■■□□ 2.11
COPE-208	ENST00000598969	TNS3	Q68CZ2	1445 aa		28.23	■■■□□ 2.11
COPE-208	ENST00000598969	AHDC1	Q5TGY3	1603 aa	Predicted RBP	28.22	■■■□□ 2.11
COPE-208	ENST00000598969	MRS2	Q9HD23	443 aa		28.22	■■■□□ 2.11
COPE-208	ENST00000598969	CENPB	P07199	599 aa	Predicted RBP	28.21	■■■□□ 2.11
COPE-208	ENST00000598969	AATK	Q6ZMQ8	1374 aa		28.21	■■■□□ 2.11
COPE-208	ENST00000598969	PIP4K2B	P78356	416 aa		28.2	■■■□□ 2.11
COPE-208	ENST00000598969	LMOD2	Q6P5Q4	547 aa		28.2	■■■□□ 2.11
COPE-208	ENST00000598969	MTHFS	P49914	203 aa		28.18	■■■□□ 2.1
COPE-208	ENST00000598969	USP19	O94966	1318 aa		28.17	■■■□□ 2.1
COPE-208	ENST00000598969	POLK	Q9UBT6	870 aa		28.16	■■■□□ 2.1
COPE-208	ENST00000598969	MAP2	P11137	1827 aa	Known RBP	28.15	■■■□□ 2.1
COPE-208	ENST00000598969	ARHGEF10	O15013	1369 aa		28.15	■■■□□ 2.1
COPE-208	ENST00000598969	SLIT3	O75094	1523 aa		28.15	■■■□□ 2.1
COPE-208	ENST00000598969	MED1	Q15648	1581 aa	Predicted RBP	28.14	■■■□□ 2.1
COPE-208	ENST00000598969	SMG6	Q86US8	1419 aa	Known RBP	28.14	■■■□□ 2.09
COPE-208	ENST00000598969	SOX12	O15370	315 aa		28.14	■■■□□ 2.09
COPE-208	ENST00000598969	RRS1	Q15050	365 aa	Known RBP	28.14	■■■□□ 2.09
COPE-208	ENST00000598969	EMILIN1	Q9Y6C2	1016 aa		28.13	■■■□□ 2.09
COPE-208	ENST00000598969	NFAT5	O94916	1531 aa		28.12	■■■□□ 2.09
COPE-208	ENST00000598969	PHLPP1	O60346	1717 aa		28.1	■■■□□ 2.09
COPE-208	ENST00000598969	GC	P02774	474 aa		28.09	■■■□□ 2.09
COPE-208	ENST00000598969	CRYBG1	Q9Y4K1	1723 aa		28.09	■■■□□ 2.09
COPE-208	ENST00000598969	COL16A1	Q07092	1604 aa	Predicted RBP	28.09	■■■□□ 2.09
COPE-208	ENST00000598969	PLEKHG5	O94827	1062 aa		28.09	■■■□□ 2.09
COPE-208	ENST00000598969	KCNH5	Q8NCM2	988 aa		28.09	■■■□□ 2.09
COPE-208	ENST00000598969	PNISR	Q8TF01	805 aa	Known RBP	28.09	■■■□□ 2.09
COPE-208	ENST00000598969	MAP3K19	Q56UN5	1328 aa		28.08	■■■□□ 2.09
COPE-208	ENST00000598969	PNPLA6	Q8IY17	1366 aa		28.08	■■■□□ 2.09
COPE-208	ENST00000598969	LRRC59	Q96AG4	307 aa	Known RBP	28.08	■■■□□ 2.09
COPE-208	ENST00000598969	PHRF1	Q9P1Y6	1649 aa	Known RBP	28.07	■■■□□ 2.08
COPE-208	ENST00000598969	COL3A1	P02461	1466 aa	Predicted RBP	28.07	■■■□□ 2.08
COPE-208	ENST00000598969	PEAK1	Q9H792	1746 aa		28.06	■■■□□ 2.08
COPE-208	ENST00000598969	INSR	P06213	1382 aa		28.06	■■■□□ 2.08
COPE-208	ENST00000598969	CDK12	Q9NYV4	1490 aa	Predicted RBP	28.06	■■■□□ 2.08
COPE-208	ENST00000598969	PPM1G	O15355	546 aa	Predicted RBP	28.06	■■■□□ 2.08
COPE-208	ENST00000598969	CABLES1	Q8TDN4	633 aa		28.06	■■■□□ 2.08
COPE-208	ENST00000598969	CFAP53	Q96M91	514 aa		28.04	■■■□□ 2.08
COPE-208	ENST00000598969	FAM9B	Q8IZU0	186 aa		28.02	■■■□□ 2.08
COPE-208	ENST00000598969	SHPRH	Q149N8	1683 aa		28.01	■■■□□ 2.07
COPE-208	ENST00000598969	LTN1	O94822	1766 aa		28.01	■■■□□ 2.07
COPE-208	ENST00000598969	ARHGEF25	Q86VW2	580 aa		28	■■■□□ 2.07
COPE-208	ENST00000598969	ABCA3	Q99758	1704 aa		28	■■■□□ 2.07
COPE-208	ENST00000598969	FLT4	P35916	1363 aa		27.99	■■■□□ 2.07
COPE-208	ENST00000598969	KIF24	Q5T7B8	1368 aa		27.99	■■■□□ 2.07
COPE-208	ENST00000598969	COL22A1	Q8NFW1	1626 aa	Predicted RBP	27.98	■■■□□ 2.07
COPE-208	ENST00000598969	AMPH	P49418	695 aa		27.98	■■■□□ 2.07
COPE-208	ENST00000598969	HSP90AB2P	Q58FF8	381 aa		27.97	■■■□□ 2.07
COPE-208	ENST00000598969	HOXC9	P31274	260 aa		27.96	■■■□□ 2.07
COPE-208	ENST00000598969	ZC3H6	P61129	1189 aa	Known RBP	27.96	■■■□□ 2.07
COPE-208	ENST00000598969	RTL1	A6NKG5	1358 aa		27.96	■■■□□ 2.07
COPE-208	ENST00000598969	DIAPH1	O60610	1272 aa	Known RBP	27.96	■■■□□ 2.07
COPE-208	ENST00000598969	IL13	P35225	146 aa		27.94	■■■□□ 2.06
COPE-208	ENST00000598969	WDR43	Q15061	677 aa	Known RBP eCLIP	27.94	■■■□□ 2.06
COPE-208	ENST00000598969	IP6K1	Q92551	441 aa		27.94	■■■□□ 2.06
COPE-208	ENST00000598969	ADAMTS8	Q9UP79	889 aa		27.94	■■■□□ 2.06

Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms