RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 KIF1AQ12756 1690 aa20.98■□□□□ 0.95
UPF1-206ENST00000598471 MYBBP1AQ9BQG0 1328 aaKnown RBP20.97■□□□□ 0.95
UPF1-206ENST00000598471 BRD4O60885 1362 aaPredicted RBP20.97■□□□□ 0.95
UPF1-206ENST00000598471 NRKQ7Z2Y5 1582 aa20.94■□□□□ 0.94
UPF1-206ENST00000598471 MORC1Q86VD1 984 aa20.94■□□□□ 0.94
UPF1-206ENST00000598471 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.94■□□□□ 0.94
UPF1-206ENST00000598471 KIF20BQ96Q89 1820 aa20.94■□□□□ 0.94
UPF1-206ENST00000598471 TTC21AQ8NDW8 1320 aa20.93■□□□□ 0.94
UPF1-206ENST00000598471 HSPA1LP34931 641 aa20.92■□□□□ 0.94
UPF1-206ENST00000598471 ORAI2Q96SN7 254 aa20.92■□□□□ 0.94
UPF1-206ENST00000598471 TTC21BQ7Z4L5 1316 aa20.92■□□□□ 0.94
UPF1-206ENST00000598471 FYB1O15117 783 aa20.91■□□□□ 0.94
UPF1-206ENST00000598471 ANKRD26Q9UPS8 1709 aa20.91■□□□□ 0.94
UPF1-206ENST00000598471 SSH2Q76I76 1423 aa20.9■□□□□ 0.94
UPF1-206ENST00000598471 PSME1Q06323 249 aa20.9■□□□□ 0.94
UPF1-206ENST00000598471 NLRP13Q86W25 1043 aa20.9■□□□□ 0.94
UPF1-206ENST00000598471 GGNBP2Q9H3C7 697 aa20.9■□□□□ 0.94
UPF1-206ENST00000598471 BRINP3Q76B58 766 aa20.87■□□□□ 0.93
UPF1-206ENST00000598471 NME9Q86XW9 330 aa20.87■□□□□ 0.93
UPF1-206ENST00000598471 COG3Q96JB2 828 aa20.87■□□□□ 0.93
UPF1-206ENST00000598471 NPHP3Q7Z494 1330 aa20.86■□□□□ 0.93
UPF1-206ENST00000598471 FOXO3O43524 673 aa20.86■□□□□ 0.93
UPF1-206ENST00000598471 PPP2R1AP30153 589 aa20.86■□□□□ 0.93
UPF1-206ENST00000598471 MRS2Q9HD23 443 aa20.86■□□□□ 0.93
UPF1-206ENST00000598471 PAK3O75914 559 aaPredicted RBP20.84■□□□□ 0.93
UPF1-206ENST00000598471 KRT28Q7Z3Y7 464 aa20.83■□□□□ 0.93
UPF1-206ENST00000598471 OVOS2A0A0J9YW53 1432 aa20.82■□□□□ 0.92
UPF1-206ENST00000598471 OVOS2Q6IE36 1432 aa20.82■□□□□ 0.92
UPF1-206ENST00000598471 DDX17Q92841 729 aaKnown RBP20.82■□□□□ 0.92
UPF1-206ENST00000598471 USP31Q70CQ4 1352 aa20.82■□□□□ 0.92
UPF1-206ENST00000598471 TNNT2P45379 298 aaPredicted RBP20.81■□□□□ 0.92
UPF1-206ENST00000598471 ABTB2Q8N961 1025 aa20.8■□□□□ 0.92
UPF1-206ENST00000598471 PIK3C2AO00443 1686 aa20.8■□□□□ 0.92
UPF1-206ENST00000598471 SBNO1A3KN83 1393 aa20.79■□□□□ 0.92
UPF1-206ENST00000598471 USP54Q70EL1 1684 aa20.78■□□□□ 0.92
UPF1-206ENST00000598471 ROBO1Q9Y6N7 1651 aa20.78■□□□□ 0.92
UPF1-206ENST00000598471 NLRP6P59044 892 aa20.78■□□□□ 0.92
UPF1-206ENST00000598471 XPCQ01831 940 aaPredicted RBP20.78■□□□□ 0.92
UPF1-206ENST00000598471 ZRANB1Q9UGI0 708 aa20.78■□□□□ 0.92
UPF1-206ENST00000598471 TRPM3Q9HCF6 1732 aaPredicted RBP20.78■□□□□ 0.92
UPF1-206ENST00000598471 AATKQ6ZMQ8 1374 aa20.77■□□□□ 0.92
UPF1-206ENST00000598471 CFAP53Q96M91 514 aa20.77■□□□□ 0.92
UPF1-206ENST00000598471 PXDNQ92626 1479 aa20.76■□□□□ 0.91
UPF1-206ENST00000598471 CCDC184Q52MB2 194 aa20.76■□□□□ 0.91
UPF1-206ENST00000598471 TNS3Q68CZ2 1445 aa20.74■□□□□ 0.91
UPF1-206ENST00000598471 NHSL1Q5SYE7 1610 aa20.74■□□□□ 0.91
UPF1-206ENST00000598471 MTHFSP49914 203 aa20.73■□□□□ 0.91
UPF1-206ENST00000598471 LMOD2Q6P5Q4 547 aa20.73■□□□□ 0.91
UPF1-206ENST00000598471 ARHGEF10O15013 1369 aa20.72■□□□□ 0.91
UPF1-206ENST00000598471 ALS2Q96Q42 1657 aa20.72■□□□□ 0.91
UPF1-206ENST00000598471 SOS2Q07890 1332 aaPredicted RBP20.72■□□□□ 0.91
UPF1-206ENST00000598471 NUTM2GQ5VZR2 741 aa20.71■□□□□ 0.91
UPF1-206ENST00000598471 SPATA31A3Q5VYP0 1347 aa20.71■□□□□ 0.91
UPF1-206ENST00000598471 SMG6Q86US8 1419 aaKnown RBP20.7■□□□□ 0.9
UPF1-206ENST00000598471 FAM9BQ8IZU0 186 aa20.7■□□□□ 0.9
UPF1-206ENST00000598471 KCNH5Q8NCM2 988 aa20.7■□□□□ 0.9
UPF1-206ENST00000598471 AHDC1Q5TGY3 1603 aaPredicted RBP20.69■□□□□ 0.9
UPF1-206ENST00000598471 WDR43Q15061 677 aaKnown RBP eCLIP20.69■□□□□ 0.9
UPF1-206ENST00000598471 PNISRQ8TF01 805 aaKnown RBP20.69■□□□□ 0.9
UPF1-206ENST00000598471 POLKQ9UBT6 870 aa20.69■□□□□ 0.9
UPF1-206ENST00000598471 CDK12Q9NYV4 1490 aaPredicted RBP20.68■□□□□ 0.9
UPF1-206ENST00000598471 MARF1Q9Y4F3 1742 aaKnown RBP20.67■□□□□ 0.9
UPF1-206ENST00000598471 SOX12O15370 315 aa20.67■□□□□ 0.9
UPF1-206ENST00000598471 USP19O94966 1318 aa20.67■□□□□ 0.9
UPF1-206ENST00000598471 SLIT3O75094 1523 aa20.67■□□□□ 0.9
UPF1-206ENST00000598471 PPM1GO15355 546 aaPredicted RBP20.66■□□□□ 0.9
UPF1-206ENST00000598471 INSRP06213 1382 aa20.65■□□□□ 0.9
UPF1-206ENST00000598471 KIF24Q5T7B8 1368 aa20.65■□□□□ 0.9
UPF1-206ENST00000598471 RRS1Q15050 365 aaKnown RBP20.65■□□□□ 0.9
UPF1-206ENST00000598471 LRRC59Q96AG4 307 aaKnown RBP20.65■□□□□ 0.9
UPF1-206ENST00000598471 EMILIN1Q9Y6C2 1016 aa20.65■□□□□ 0.9
UPF1-206ENST00000598471 MAP2P11137 1827 aaKnown RBP20.64■□□□□ 0.9
UPF1-206ENST00000598471 MED1Q15648 1581 aaPredicted RBP20.64■□□□□ 0.9
UPF1-206ENST00000598471 PNPLA6Q8IY17 1366 aa20.64■□□□□ 0.89
UPF1-206ENST00000598471 YTHDC1Q96MU7 727 aaKnown RBP20.64■□□□□ 0.89
UPF1-206ENST00000598471 NUDCQ9Y266 331 aa20.64■□□□□ 0.89
UPF1-206ENST00000598471 PHLPP1O60346 1717 aa20.64■□□□□ 0.89
UPF1-206ENST00000598471 FBLN1P23142 703 aa20.63■□□□□ 0.89
UPF1-206ENST00000598471 NFAT5O94916 1531 aa20.63■□□□□ 0.89
UPF1-206ENST00000598471 COL3A1P02461 1466 aaPredicted RBP20.62■□□□□ 0.89
UPF1-206ENST00000598471 FLT4P35916 1363 aa20.62■□□□□ 0.89
UPF1-206ENST00000598471 MAP3K19Q56UN5 1328 aa20.62■□□□□ 0.89
UPF1-206ENST00000598471 GCP02774 474 aa20.62■□□□□ 0.89
UPF1-206ENST00000598471 AMPHP49418 695 aa20.62■□□□□ 0.89
UPF1-206ENST00000598471 RTL1A6NKG5 1358 aa20.61■□□□□ 0.89
UPF1-206ENST00000598471 DIAPH1O60610 1272 aaKnown RBP20.61■□□□□ 0.89
UPF1-206ENST00000598471 JCADQ9P266 1359 aa20.6■□□□□ 0.89
UPF1-206ENST00000598471 COL16A1Q07092 1604 aaPredicted RBP20.6■□□□□ 0.89
UPF1-206ENST00000598471 PHRF1Q9P1Y6 1649 aaKnown RBP20.6■□□□□ 0.89
UPF1-206ENST00000598471 PLEKHG5O94827 1062 aa20.59■□□□□ 0.89
UPF1-206ENST00000598471 SHPRHQ149N8 1683 aa20.58■□□□□ 0.89
UPF1-206ENST00000598471 PEAK1Q9H792 1746 aa20.57■□□□□ 0.88
UPF1-206ENST00000598471 NUTM2BA6NNL0 878 aaPredicted RBP20.56■□□□□ 0.88
UPF1-206ENST00000598471 NUTM2EB1AL46 878 aaPredicted RBP20.56■□□□□ 0.88
UPF1-206ENST00000598471 HAP1P54257 671 aaPredicted RBP20.56■□□□□ 0.88
UPF1-206ENST00000598471 NUTM2AQ8IVF1 878 aaPredicted RBP20.56■□□□□ 0.88
UPF1-206ENST00000598471 ADAMTS8Q9UP79 889 aa20.56■□□□□ 0.88
UPF1-206ENST00000598471 LTN1O94822 1766 aa20.56■□□□□ 0.88
UPF1-206ENST00000598471 CRYBG1Q9Y4K1 1723 aa20.56■□□□□ 0.88
UPF1-206ENST00000598471 BLMP54132 1417 aaPredicted RBP20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms