RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 FAM98CQ17RN3 349 aaKnown RBP18.31■□□□□ 0.52
TRIM28-212ENST00000597995 COL14A1Q05707 1796 aaKnown RBP18.31■□□□□ 0.52
TRIM28-212ENST00000597995 NRAPQ86VF7 1730 aa18.31■□□□□ 0.52
TRIM28-212ENST00000597995 A0A0G2JS52 829 aa18.3■□□□□ 0.52
TRIM28-212ENST00000597995 MYT1Q01538 1121 aa18.3■□□□□ 0.52
TRIM28-212ENST00000597995 BAG6P46379 1132 aa18.29■□□□□ 0.52
TRIM28-212ENST00000597995 SPATA31A5Q5VU36 1347 aa18.28■□□□□ 0.52
TRIM28-212ENST00000597995 SPATA31A7Q8IWB4 1347 aa18.28■□□□□ 0.52
TRIM28-212ENST00000597995 PAK3O75914 559 aaPredicted RBP18.28■□□□□ 0.52
TRIM28-212ENST00000597995 NUDT16Q96DE0 195 aaKnown RBP18.28■□□□□ 0.52
TRIM28-212ENST00000597995 PRDM11Q9NQV5 511 aa18.27■□□□□ 0.52
TRIM28-212ENST00000597995 CRYBG1Q9Y4K1 1723 aa18.25■□□□□ 0.51
TRIM28-212ENST00000597995 ATP7BP35670 1465 aa18.25■□□□□ 0.51
TRIM28-212ENST00000597995 ITSN1Q15811 1721 aa18.24■□□□□ 0.51
TRIM28-212ENST00000597995 ARHGEF28Q8N1W1 1705 aaKnown RBP18.24■□□□□ 0.51
TRIM28-212ENST00000597995 CDK19Q9BWU1 502 aa18.24■□□□□ 0.51
TRIM28-212ENST00000597995 CCDC61Q9Y6R9 512 aa18.22■□□□□ 0.51
TRIM28-212ENST00000597995 SPATA31A1Q5TZJ5 1347 aa18.22■□□□□ 0.51
TRIM28-212ENST00000597995 POLR3AO14802 1390 aaPredicted RBP18.21■□□□□ 0.51
TRIM28-212ENST00000597995 KIAA0232Q92628 1395 aa18.21■□□□□ 0.51
TRIM28-212ENST00000597995 PLEKHG3A1L390 1219 aa18.21■□□□□ 0.51
TRIM28-212ENST00000597995 THSD7AQ9UPZ6 1657 aa18.21■□□□□ 0.51
TRIM28-212ENST00000597995 NBPF8Q3BBV2 869 aa18.2■□□□□ 0.5
TRIM28-212ENST00000597995 ACEP12821 1306 aa18.2■□□□□ 0.5
TRIM28-212ENST00000597995 LRP5O75197 1615 aa18.2■□□□□ 0.5
TRIM28-212ENST00000597995 DISP2A7MBM2 1401 aa18.19■□□□□ 0.5
TRIM28-212ENST00000597995 RGPD1P0DJD0 1748 aa18.19■□□□□ 0.5
TRIM28-212ENST00000597995 EN1Q05925 392 aaPredicted RBP18.19■□□□□ 0.5
TRIM28-212ENST00000597995 FAM182BQ5T319 152 aa18.19■□□□□ 0.5
TRIM28-212ENST00000597995 ZC3H6P61129 1189 aaKnown RBP18.18■□□□□ 0.5
TRIM28-212ENST00000597995 CHRNA2Q15822 529 aa18.18■□□□□ 0.5
TRIM28-212ENST00000597995 KIAA1210Q9ULL0 1709 aa18.18■□□□□ 0.5
TRIM28-212ENST00000597995 PSDA5PKW4 1024 aaPredicted RBP18.17■□□□□ 0.5
TRIM28-212ENST00000597995 FAM196AQ6ZSG2 479 aa18.17■□□□□ 0.5
TRIM28-212ENST00000597995 STRN4Q9NRL3 753 aa18.17■□□□□ 0.5
TRIM28-212ENST00000597995 PHRF1Q9P1Y6 1649 aaKnown RBP18.16■□□□□ 0.5
TRIM28-212ENST00000597995 NUTM2GQ5VZR2 741 aa18.16■□□□□ 0.5
TRIM28-212ENST00000597995 TOPAZ1Q8N9V7 1692 aa18.15■□□□□ 0.5
TRIM28-212ENST00000597995 EVA1CP58658 441 aa18.15■□□□□ 0.5
TRIM28-212ENST00000597995 BARGINQ6ZT62 677 aa18.15■□□□□ 0.5
TRIM28-212ENST00000597995 ABTB2Q8N961 1025 aa18.15■□□□□ 0.5
TRIM28-212ENST00000597995 CPDO75976 1380 aa18.14■□□□□ 0.49
TRIM28-212ENST00000597995 NBPF1Q3BBV0 1214 aa18.13■□□□□ 0.49
TRIM28-212ENST00000597995 NLRP13Q86W25 1043 aa18.13■□□□□ 0.49
TRIM28-212ENST00000597995 USP19O94966 1318 aa18.13■□□□□ 0.49
TRIM28-212ENST00000597995 TNS1Q9HBL0 1735 aaKnown RBP18.12■□□□□ 0.49
TRIM28-212ENST00000597995 TRIM37O94972 964 aa18.12■□□□□ 0.49
TRIM28-212ENST00000597995 CAMKK2Q96RR4 588 aa18.12■□□□□ 0.49
TRIM28-212ENST00000597995 BRD4O60885 1362 aaPredicted RBP18.12■□□□□ 0.49
TRIM28-212ENST00000597995 SSH2Q76I76 1423 aa18.12■□□□□ 0.49
TRIM28-212ENST00000597995 PDE3BQ13370 1112 aa18.11■□□□□ 0.49
TRIM28-212ENST00000597995 R3HDM1Q15032 1099 aaKnown RBP18.11■□□□□ 0.49
TRIM28-212ENST00000597995 EZH2Q15910 746 aaKnown RBP18.11■□□□□ 0.49
TRIM28-212ENST00000597995 USP35Q9P2H5 1018 aa18.11■□□□□ 0.49
TRIM28-212ENST00000597995 PARD3Q8TEW0 1356 aa18.11■□□□□ 0.49
TRIM28-212ENST00000597995 CAMTA1Q9Y6Y1 1673 aa18.1■□□□□ 0.49
TRIM28-212ENST00000597995 CENPJQ9HC77 1338 aaPredicted RBP18.1■□□□□ 0.49
TRIM28-212ENST00000597995 SRPK2P78362 688 aaKnown RBP18.1■□□□□ 0.49
TRIM28-212ENST00000597995 TCP11L2Q8N4U5 519 aa18.1■□□□□ 0.49
TRIM28-212ENST00000597995 THRAP3Q9Y2W1 955 aaKnown RBP18.1■□□□□ 0.49
TRIM28-212ENST00000597995 NRKQ7Z2Y5 1582 aa18.09■□□□□ 0.49
TRIM28-212ENST00000597995 APBA3O96018 575 aa18.09■□□□□ 0.49
TRIM28-212ENST00000597995 GCP02774 474 aa18.09■□□□□ 0.49
TRIM28-212ENST00000597995 LARP1Q6PKG0 1096 aaKnown RBP18.09■□□□□ 0.49
TRIM28-212ENST00000597995 PPIP5K1Q6PFW1 1433 aa18.08■□□□□ 0.49
TRIM28-212ENST00000597995 LMO7Q8WWI1 1683 aa18.07■□□□□ 0.48
TRIM28-212ENST00000597995 CABP2Q9NPB3 220 aa18.07■□□□□ 0.48
TRIM28-212ENST00000597995 C11orf95C9JLR9 678 aaPredicted RBP18.06■□□□□ 0.48
TRIM28-212ENST00000597995 CABP1Q9NZU7 370 aa18.04■□□□□ 0.48
TRIM28-212ENST00000597995 COL5A2P05997 1499 aaPredicted RBP18.03■□□□□ 0.48
TRIM28-212ENST00000597995 USP6P35125 1406 aa18.03■□□□□ 0.48
TRIM28-212ENST00000597995 AATKQ6ZMQ8 1374 aa18.03■□□□□ 0.48
TRIM28-212ENST00000597995 NLRP6P59044 892 aa18.02■□□□□ 0.48
TRIM28-212ENST00000597995 CRB1P82279 1406 aa18.01■□□□□ 0.47
TRIM28-212ENST00000597995 NBPF14Q5TI25 921 aa18.01■□□□□ 0.47
TRIM28-212ENST00000597995 QRICH2Q9H0J4 1663 aa18■□□□□ 0.47
TRIM28-212ENST00000597995 PARP4Q9UKK3 1724 aaKnown RBP18■□□□□ 0.47
TRIM28-212ENST00000597995 EVC2Q86UK5 1308 aa17.99■□□□□ 0.47
TRIM28-212ENST00000597995 SLIT3O75094 1523 aa17.99■□□□□ 0.47
TRIM28-212ENST00000597995 L3MBTL2Q969R5 705 aa17.99■□□□□ 0.47
TRIM28-212ENST00000597995 RREB1Q92766 1687 aa17.99■□□□□ 0.47
TRIM28-212ENST00000597995 ZNF692Q9BU19 519 aaPredicted RBP17.98■□□□□ 0.47
TRIM28-212ENST00000597995 NUP188Q5SRE5 1749 aa17.96■□□□□ 0.47
TRIM28-212ENST00000597995 ZBTB7CA1YPR0 619 aa17.96■□□□□ 0.47
TRIM28-212ENST00000597995 TOM1L2Q6ZVM7 507 aa17.96■□□□□ 0.47
TRIM28-212ENST00000597995 OVOS2A0A0G2JMS6 1433 aa17.96■□□□□ 0.47
TRIM28-212ENST00000597995 OVOS2A0A0J9YW53 1432 aa17.96■□□□□ 0.47
TRIM28-212ENST00000597995 OVOS2Q6IE36 1432 aa17.96■□□□□ 0.47
TRIM28-212ENST00000597995 PLSCR1O15162 318 aa17.95■□□□□ 0.46
TRIM28-212ENST00000597995 DDB1Q16531 1140 aa17.95■□□□□ 0.46
TRIM28-212ENST00000597995 KCNH5Q8NCM2 988 aa17.95■□□□□ 0.46
TRIM28-212ENST00000597995 CDCA7Q9BWT1 371 aaPredicted RBP17.95■□□□□ 0.46
TRIM28-212ENST00000597995 TTC21BQ7Z4L5 1316 aa17.94■□□□□ 0.46
TRIM28-212ENST00000597995 WDR17Q8IZU2 1322 aa17.94■□□□□ 0.46
TRIM28-212ENST00000597995 COL18A1P39060 1754 aa17.94■□□□□ 0.46
TRIM28-212ENST00000597995 PEAK1Q9H792 1746 aa17.93■□□□□ 0.46
TRIM28-212ENST00000597995 ARHGEF25Q86VW2 580 aa17.93■□□□□ 0.46
TRIM28-212ENST00000597995 AXIN2Q9Y2T1 843 aa17.93■□□□□ 0.46
TRIM28-212ENST00000597995 TTC21AQ8NDW8 1320 aa17.93■□□□□ 0.46
TRIM28-212ENST00000597995 PIK3C2AO00443 1686 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms