RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 NWD2Q9ULI1 1742 aa22.99■■□□□ 1.27
TRIM28-206ENST00000595974 USP21Q9UK80 565 aa22.99■■□□□ 1.27
TRIM28-206ENST00000595974 PHRF1Q9P1Y6 1649 aaKnown RBP22.98■■□□□ 1.27
TRIM28-206ENST00000595974 PAK3O75914 559 aaPredicted RBP22.98■■□□□ 1.27
TRIM28-206ENST00000595974 RXRBP28702 533 aa22.98■■□□□ 1.27
TRIM28-206ENST00000595974 AKAP12Q02952 1782 aa22.97■■□□□ 1.27
TRIM28-206ENST00000595974 CABLES1Q8TDN4 633 aa22.97■■□□□ 1.27
TRIM28-206ENST00000595974 BRD4O60885 1362 aaPredicted RBP22.97■■□□□ 1.27
TRIM28-206ENST00000595974 ATAD2Q6PL18 1390 aa22.97■■□□□ 1.27
TRIM28-206ENST00000595974 SLIT2O94813 1529 aa22.97■■□□□ 1.27
TRIM28-206ENST00000595974 QTRT2Q9H974 415 aaKnown RBP22.96■■□□□ 1.27
TRIM28-206ENST00000595974 ATRNO75882 1429 aa22.96■■□□□ 1.27
TRIM28-206ENST00000595974 BCL9LQ86UU0 1499 aa22.96■■□□□ 1.27
TRIM28-206ENST00000595974 TRPC5Q9UL62 973 aaPredicted RBP22.95■■□□□ 1.26
TRIM28-206ENST00000595974 USP6P35125 1406 aa22.94■■□□□ 1.26
TRIM28-206ENST00000595974 RBM6P78332 1123 aaKnown RBP22.94■■□□□ 1.26
TRIM28-206ENST00000595974 PLEKHG5O94827 1062 aa22.93■■□□□ 1.26
TRIM28-206ENST00000595974 CCER1Q8TC90 406 aaPredicted RBP22.93■■□□□ 1.26
TRIM28-206ENST00000595974 CABP1Q9NZU7 370 aa22.93■■□□□ 1.26
TRIM28-206ENST00000595974 COL14A1Q05707 1796 aaKnown RBP22.93■■□□□ 1.26
TRIM28-206ENST00000595974 MON2Q7Z3U7 1717 aa22.91■■□□□ 1.26
TRIM28-206ENST00000595974 NRAPQ86VF7 1730 aa22.9■■□□□ 1.26
TRIM28-206ENST00000595974 RGS12O14924 1447 aa22.9■■□□□ 1.26
TRIM28-206ENST00000595974 NRKQ7Z2Y5 1582 aa22.89■■□□□ 1.26
TRIM28-206ENST00000595974 UNC5CLQ8IV45 518 aa22.88■■□□□ 1.25
TRIM28-206ENST00000595974 USP47Q96K76 1375 aa22.88■■□□□ 1.25
TRIM28-206ENST00000595974 PIK3C2AO00443 1686 aa22.87■■□□□ 1.25
TRIM28-206ENST00000595974 SLC24A1O60721 1099 aa22.87■■□□□ 1.25
TRIM28-206ENST00000595974 SSH2Q76I76 1423 aa22.87■■□□□ 1.25
TRIM28-206ENST00000595974 CPSF1Q10570 1443 aaKnown RBP22.86■■□□□ 1.25
TRIM28-206ENST00000595974 ST20-MTHFSA0A0A6YYL1 179 aa22.86■■□□□ 1.25
TRIM28-206ENST00000595974 ABTB2Q8N961 1025 aa22.86■■□□□ 1.25
TRIM28-206ENST00000595974 TESK2Q96S53 571 aa22.86■■□□□ 1.25
TRIM28-206ENST00000595974 USP19O94966 1318 aa22.85■■□□□ 1.25
TRIM28-206ENST00000595974 PUS7Q96PZ0 661 aaKnown RBP22.85■■□□□ 1.25
TRIM28-206ENST00000595974 ZNF692Q9BU19 519 aaPredicted RBP22.85■■□□□ 1.25
TRIM28-206ENST00000595974 GLI3P10071 1580 aa22.84■■□□□ 1.25
TRIM28-206ENST00000595974 FAM83GA6ND36 823 aa22.84■■□□□ 1.25
TRIM28-206ENST00000595974 NUTM2GQ5VZR2 741 aa22.84■■□□□ 1.25
TRIM28-206ENST00000595974 NLRP13Q86W25 1043 aa22.83■■□□□ 1.25
TRIM28-206ENST00000595974 GJD4Q96KN9 370 aaPredicted RBP22.82■■□□□ 1.24
TRIM28-206ENST00000595974 SLIT3O75094 1523 aa22.82■■□□□ 1.24
TRIM28-206ENST00000595974 KTN1Q86UP2 1357 aaKnown RBP22.81■■□□□ 1.24
TRIM28-206ENST00000595974 KIAA0232Q92628 1395 aa22.81■■□□□ 1.24
TRIM28-206ENST00000595974 PRDM11Q9NQV5 511 aa22.81■■□□□ 1.24
TRIM28-206ENST00000595974 CD163L1Q9NR16 1453 aa22.8■■□□□ 1.24
TRIM28-206ENST00000595974 NINLQ9Y2I6 1382 aa22.8■■□□□ 1.24
TRIM28-206ENST00000595974 VPS72Q15906 364 aa22.8■■□□□ 1.24
TRIM28-206ENST00000595974 TTC21AQ8NDW8 1320 aa22.8■■□□□ 1.24
TRIM28-206ENST00000595974 CPDO75976 1380 aa22.79■■□□□ 1.24
TRIM28-206ENST00000595974 USP54Q70EL1 1684 aa22.79■■□□□ 1.24
TRIM28-206ENST00000595974 TTC21BQ7Z4L5 1316 aa22.79■■□□□ 1.24
TRIM28-206ENST00000595974 BTG4Q9NY30 223 aa22.78■■□□□ 1.24
TRIM28-206ENST00000595974 LMO7Q8WWI1 1683 aa22.77■■□□□ 1.24
TRIM28-206ENST00000595974 NLRP6P59044 892 aa22.76■■□□□ 1.23
TRIM28-206ENST00000595974 ZC3H6P61129 1189 aaKnown RBP22.76■■□□□ 1.23
TRIM28-206ENST00000595974 TMC1Q8TDI8 760 aa22.76■■□□□ 1.23
TRIM28-206ENST00000595974 GCP02774 474 aa22.75■■□□□ 1.23
TRIM28-206ENST00000595974 TMF1P82094 1093 aa22.75■■□□□ 1.23
TRIM28-206ENST00000595974 HDGFL2Q7Z4V5 671 aaPredicted RBP22.75■■□□□ 1.23
TRIM28-206ENST00000595974 EDC4Q6P2E9 1401 aaKnown RBP22.74■■□□□ 1.23
TRIM28-206ENST00000595974 BRWD3Q6RI45 1802 aa22.74■■□□□ 1.23
TRIM28-206ENST00000595974 SLC12A5Q9H2X9 1139 aa22.74■■□□□ 1.23
TRIM28-206ENST00000595974 TERF2IPQ9NYB0 399 aa22.74■■□□□ 1.23
TRIM28-206ENST00000595974 A0A1W2PP64 1363 aa22.74■■□□□ 1.23
TRIM28-206ENST00000595974 CHRNA2Q15822 529 aa22.73■■□□□ 1.23
TRIM28-206ENST00000595974 CCDC9Q9Y3X0 531 aaKnown RBP22.73■■□□□ 1.23
TRIM28-206ENST00000595974 CAMTA1Q9Y6Y1 1673 aa22.71■■□□□ 1.23
TRIM28-206ENST00000595974 CDCA8Q53HL2 280 aa22.7■■□□□ 1.22
TRIM28-206ENST00000595974 MYOM1P52179 1685 aa22.69■■□□□ 1.22
TRIM28-206ENST00000595974 NFAT5O94916 1531 aa22.69■■□□□ 1.22
TRIM28-206ENST00000595974 USP31Q70CQ4 1352 aa22.69■■□□□ 1.22
TRIM28-206ENST00000595974 UPF1Q92900 1129 aaKnown RBP eCLIP22.69■■□□□ 1.22
TRIM28-206ENST00000595974 EP400Q96L91 3159 aa22.69■■□□□ 1.22
TRIM28-206ENST00000595974 COL18A1P39060 1754 aa22.68■■□□□ 1.22
TRIM28-206ENST00000595974 SPATA31A5Q5VU36 1347 aa22.68■■□□□ 1.22
TRIM28-206ENST00000595974 SPATA31A7Q8IWB4 1347 aa22.68■■□□□ 1.22
TRIM28-206ENST00000595974 KCNH5Q8NCM2 988 aa22.68■■□□□ 1.22
TRIM28-206ENST00000595974 ANKRD36BQ8N2N9 1353 aa22.67■■□□□ 1.22
TRIM28-206ENST00000595974 ONECUT3O60422 494 aaPredicted RBP22.67■■□□□ 1.22
TRIM28-206ENST00000595974 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.67■■□□□ 1.22
TRIM28-206ENST00000595974 THSD7AQ9UPZ6 1657 aa22.67■■□□□ 1.22
TRIM28-206ENST00000595974 AATKQ6ZMQ8 1374 aa22.66■■□□□ 1.22
TRIM28-206ENST00000595974 ABCC6O95255 1503 aa22.66■■□□□ 1.22
TRIM28-206ENST00000595974 COL5A2P05997 1499 aaPredicted RBP22.66■■□□□ 1.22
TRIM28-206ENST00000595974 SEPT12Q8IYM1 358 aa22.65■■□□□ 1.22
TRIM28-206ENST00000595974 STRN4Q9NRL3 753 aa22.65■■□□□ 1.22
TRIM28-206ENST00000595974 LTN1O94822 1766 aa22.64■■□□□ 1.22
TRIM28-206ENST00000595974 RGPD5Q99666 1765 aa22.64■■□□□ 1.22
TRIM28-206ENST00000595974 OVOS2A0A0J9YW53 1432 aa22.64■■□□□ 1.21
TRIM28-206ENST00000595974 OVOS2Q6IE36 1432 aa22.64■■□□□ 1.21
TRIM28-206ENST00000595974 SPATA31A1Q5TZJ5 1347 aa22.63■■□□□ 1.21
TRIM28-206ENST00000595974 EIF4G2P78344 907 aaKnown RBP eCLIP22.63■■□□□ 1.21
TRIM28-206ENST00000595974 NME9Q86XW9 330 aa22.63■■□□□ 1.21
TRIM28-206ENST00000595974 EVA1CP58658 441 aa22.62■■□□□ 1.21
TRIM28-206ENST00000595974 FAM98CQ17RN3 349 aaKnown RBP22.62■■□□□ 1.21
TRIM28-206ENST00000595974 ZBTB7CA1YPR0 619 aa22.61■■□□□ 1.21
TRIM28-206ENST00000595974 ARHGEF25Q86VW2 580 aa22.61■■□□□ 1.21
TRIM28-206ENST00000595974 KIF20BQ96Q89 1820 aa22.61■■□□□ 1.21
TRIM28-206ENST00000595974 A0A0G2JS52 829 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms