RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 AKAP12Q02952 1782 aa36■■■■□ 3.35
TRIM28-204ENST00000594806 CPSF1Q10570 1443 aaKnown RBP35.99■■■■□ 3.35
TRIM28-204ENST00000594806 TMC1Q8TDI8 760 aa35.98■■■■□ 3.35
TRIM28-204ENST00000594806 TERF2IPQ9NYB0 399 aa35.95■■■■□ 3.35
TRIM28-204ENST00000594806 HDGFL2Q7Z4V5 671 aaPredicted RBP35.94■■■■□ 3.34
TRIM28-204ENST00000594806 SLC12A5Q9H2X9 1139 aa35.94■■■■□ 3.34
TRIM28-204ENST00000594806 SSH2Q76I76 1423 aa35.93■■■■□ 3.34
TRIM28-204ENST00000594806 KTN1Q86UP2 1357 aaKnown RBP35.91■■■■□ 3.34
TRIM28-204ENST00000594806 ABTB2Q8N961 1025 aa35.91■■■■□ 3.34
TRIM28-204ENST00000594806 HAP1P54257 671 aaPredicted RBP35.9■■■■□ 3.34
TRIM28-204ENST00000594806 MON2Q7Z3U7 1717 aa35.9■■■■□ 3.34
TRIM28-204ENST00000594806 MARF1Q9Y4F3 1742 aaKnown RBP35.9■■■■□ 3.34
TRIM28-204ENST00000594806 CD163L1Q9NR16 1453 aa35.89■■■■□ 3.34
TRIM28-204ENST00000594806 ADAMTS2O95450 1211 aa35.89■■■■□ 3.34
TRIM28-204ENST00000594806 TTC21AQ8NDW8 1320 aa35.88■■■■□ 3.33
TRIM28-204ENST00000594806 ABCA3Q99758 1704 aa35.87■■■■□ 3.33
TRIM28-204ENST00000594806 TTC21BQ7Z4L5 1316 aa35.86■■■■□ 3.33
TRIM28-204ENST00000594806 NLRP13Q86W25 1043 aa35.86■■■■□ 3.33
TRIM28-204ENST00000594806 CABLES1Q8TDN4 633 aa35.85■■■■□ 3.33
TRIM28-204ENST00000594806 ZNF772Q68DY9 489 aaPredicted RBP35.84■■■■□ 3.33
TRIM28-204ENST00000594806 C8orf37Q96NL8 207 aa35.84■■■■□ 3.33
TRIM28-204ENST00000594806 NRKQ7Z2Y5 1582 aa35.84■■■■□ 3.33
TRIM28-204ENST00000594806 CRYBG1Q9Y4K1 1723 aa35.83■■■■□ 3.33
TRIM28-204ENST00000594806 NGLY1Q96IV0 654 aa35.83■■■■□ 3.33
TRIM28-204ENST00000594806 RGS17Q9UGC6 210 aaPredicted RBP35.83■■■■□ 3.33
TRIM28-204ENST00000594806 A0A1W2PP64 1363 aa35.83■■■■□ 3.33
TRIM28-204ENST00000594806 ANKRD36BQ8N2N9 1353 aa35.82■■■■□ 3.32
TRIM28-204ENST00000594806 EDC4Q6P2E9 1401 aaKnown RBP35.82■■■■□ 3.32
TRIM28-204ENST00000594806 USP19O94966 1318 aa35.79■■■■□ 3.32
TRIM28-204ENST00000594806 AFF2P51816 1311 aa35.79■■■■□ 3.32
TRIM28-204ENST00000594806 NUTM2GQ5VZR2 741 aa35.78■■■■□ 3.32
TRIM28-204ENST00000594806 FNBP4Q8N3X1 1017 aaPredicted RBP35.78■■■■□ 3.32
TRIM28-204ENST00000594806 PLEKHG5O94827 1062 aa35.77■■■■□ 3.32
TRIM28-204ENST00000594806 NLRP6P59044 892 aa35.77■■■■□ 3.32
TRIM28-204ENST00000594806 PIK3C2AO00443 1686 aa35.76■■■■□ 3.32
TRIM28-204ENST00000594806 PHRF1Q9P1Y6 1649 aaKnown RBP35.75■■■■□ 3.31
TRIM28-204ENST00000594806 MYOM1P52179 1685 aa35.74■■■■□ 3.31
TRIM28-204ENST00000594806 ZEB1P37275 1124 aaPredicted RBP35.72■■■■□ 3.31
TRIM28-204ENST00000594806 SUGP2Q8IX01 1082 aaKnown RBP eCLIP35.71■■■■□ 3.31
TRIM28-204ENST00000594806 USP31Q70CQ4 1352 aa35.71■■■■□ 3.31
TRIM28-204ENST00000594806 USP21Q9UK80 565 aa35.7■■■■□ 3.31
TRIM28-204ENST00000594806 GCP02774 474 aa35.69■■■■□ 3.3
TRIM28-204ENST00000594806 SLIT3O75094 1523 aa35.68■■■■□ 3.3
TRIM28-204ENST00000594806 SLIT2O94813 1529 aa35.68■■■■□ 3.3
TRIM28-204ENST00000594806 POLR3GLQ9BT43 218 aa35.68■■■■□ 3.3
TRIM28-204ENST00000594806 USP54Q70EL1 1684 aa35.68■■■■□ 3.3
TRIM28-204ENST00000594806 POTEAQ6S8J7 498 aa35.67■■■■□ 3.3
TRIM28-204ENST00000594806 KCNH5Q8NCM2 988 aa35.67■■■■□ 3.3
TRIM28-204ENST00000594806 COL14A1Q05707 1796 aaKnown RBP35.66■■■■□ 3.3
TRIM28-204ENST00000594806 FAM83GA6ND36 823 aa35.66■■■■□ 3.3
TRIM28-204ENST00000594806 NWD2Q9ULI1 1742 aa35.66■■■■□ 3.3
TRIM28-204ENST00000594806 CPDO75976 1380 aa35.65■■■■□ 3.3
TRIM28-204ENST00000594806 C11orf95C9JLR9 678 aaPredicted RBP35.65■■■■□ 3.3
TRIM28-204ENST00000594806 PRDM11Q9NQV5 511 aa35.65■■■■□ 3.3
TRIM28-204ENST00000594806 TNKS1BP1Q9C0C2 1729 aaKnown RBP35.64■■■■□ 3.3
TRIM28-204ENST00000594806 NME9Q86XW9 330 aa35.64■■■■□ 3.3
TRIM28-204ENST00000594806 BCL9LQ86UU0 1499 aa35.63■■■■□ 3.29
TRIM28-204ENST00000594806 TRPC5Q9UL62 973 aaPredicted RBP35.63■■■■□ 3.29
TRIM28-204ENST00000594806 UNC5CLQ8IV45 518 aa35.62■■■■□ 3.29
TRIM28-204ENST00000594806 QTRT2Q9H974 415 aaKnown RBP35.62■■■■□ 3.29
TRIM28-204ENST00000594806 KIAA0232Q92628 1395 aa35.62■■■■□ 3.29
TRIM28-204ENST00000594806 PLCH1Q4KWH8 1693 aa35.62■■■■□ 3.29
TRIM28-204ENST00000594806 ZC3H6P61129 1189 aaKnown RBP35.61■■■■□ 3.29
TRIM28-204ENST00000594806 KIF7Q2M1P5 1343 aa35.6■■■■□ 3.29
TRIM28-204ENST00000594806 ATRNO75882 1429 aa35.57■■■■□ 3.28
TRIM28-204ENST00000594806 CARD14Q9BXL6 1004 aa35.56■■■■□ 3.28
TRIM28-204ENST00000594806 OVOS2A0A0J9YW53 1432 aa35.56■■■■□ 3.28
TRIM28-204ENST00000594806 OVOS2Q6IE36 1432 aa35.56■■■■□ 3.28
TRIM28-204ENST00000594806 RXRBP28702 533 aa35.55■■■■□ 3.28
TRIM28-204ENST00000594806 COG3Q96JB2 828 aa35.55■■■■□ 3.28
TRIM28-204ENST00000594806 BTG4Q9NY30 223 aa35.55■■■■□ 3.28
TRIM28-204ENST00000594806 ZRANB1Q9UGI0 708 aa35.55■■■■□ 3.28
TRIM28-204ENST00000594806 RBM6P78332 1123 aaKnown RBP35.54■■■■□ 3.28
TRIM28-204ENST00000594806 NSD3Q9BZ95 1437 aa35.54■■■■□ 3.28
TRIM28-204ENST00000594806 FYB1O15117 783 aa35.53■■■■□ 3.28
TRIM28-204ENST00000594806 ILDR2Q71H61 639 aa35.53■■■■□ 3.28
TRIM28-204ENST00000594806 KIF20BQ96Q89 1820 aa35.51■■■■□ 3.28
TRIM28-204ENST00000594806 CHRNA2Q15822 529 aa35.51■■■■□ 3.28
TRIM28-204ENST00000594806 PANK3Q9H999 370 aa35.51■■■■□ 3.28
TRIM28-204ENST00000594806 NFAT5O94916 1531 aa35.51■■■■□ 3.27
TRIM28-204ENST00000594806 CCDC7Q96M83 1385 aa35.51■■■■□ 3.27
TRIM28-204ENST00000594806 NRAPQ86VF7 1730 aa35.5■■■■□ 3.27
TRIM28-204ENST00000594806 VPS72Q15906 364 aa35.5■■■■□ 3.27
TRIM28-204ENST00000594806 ARHGEF25Q86VW2 580 aa35.5■■■■□ 3.27
TRIM28-204ENST00000594806 AATKQ6ZMQ8 1374 aa35.5■■■■□ 3.27
TRIM28-204ENST00000594806 CGNL1Q0VF96 1302 aa35.49■■■■□ 3.27
TRIM28-204ENST00000594806 CDK12Q9NYV4 1490 aaPredicted RBP35.48■■■■□ 3.27
TRIM28-204ENST00000594806 LMO7Q8WWI1 1683 aa35.47■■■■□ 3.27
TRIM28-204ENST00000594806 GJD4Q96KN9 370 aaPredicted RBP35.46■■■■□ 3.27
TRIM28-204ENST00000594806 WASHC2AQ641Q2 1341 aa35.45■■■■□ 3.27
TRIM28-204ENST00000594806 ABCC6O95255 1503 aa35.45■■■■□ 3.27
TRIM28-204ENST00000594806 SOX12O15370 315 aa35.44■■■■□ 3.26
TRIM28-204ENST00000594806 GGNBP2Q9H3C7 697 aa35.44■■■■□ 3.26
TRIM28-204ENST00000594806 CAMTA1Q9Y6Y1 1673 aa35.43■■■■□ 3.26
TRIM28-204ENST00000594806 COL18A1P39060 1754 aa35.42■■■■□ 3.26
TRIM28-204ENST00000594806 EVA1CP58658 441 aa35.41■■■■□ 3.26
TRIM28-204ENST00000594806 ZBTB7CA1YPR0 619 aa35.4■■■■□ 3.26
TRIM28-204ENST00000594806 LTN1O94822 1766 aa35.38■■■■□ 3.25
TRIM28-204ENST00000594806 CCDC9Q9Y3X0 531 aaKnown RBP35.38■■■■□ 3.25
TRIM28-204ENST00000594806 KNSTRNQ9Y448 316 aa35.38■■■■□ 3.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms