RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 PIK3C2BO00750 1634 aa18.77■□□□□ 0.6
SMARCA4-219ENST00000592604 FSD2A1L4K1 749 aa18.77■□□□□ 0.6
SMARCA4-219ENST00000592604 ABCC3O15438 1527 aa18.77■□□□□ 0.6
SMARCA4-219ENST00000592604 CAMSAP1Q5T5Y3 1602 aa18.76■□□□□ 0.59
SMARCA4-219ENST00000592604 NEXMIFQ5QGS0 1516 aa18.76■□□□□ 0.59
SMARCA4-219ENST00000592604 CABP2Q9NPB3 220 aa18.76■□□□□ 0.59
SMARCA4-219ENST00000592604 MFAP1P55081 439 aaKnown RBP18.75■□□□□ 0.59
SMARCA4-219ENST00000592604 GGT6Q6P531 493 aa18.75■□□□□ 0.59
SMARCA4-219ENST00000592604 AEBP2Q6ZN18 517 aaPredicted RBP18.75■□□□□ 0.59
SMARCA4-219ENST00000592604 ITPRIPQ8IWB1 547 aa18.75■□□□□ 0.59
SMARCA4-219ENST00000592604 A0A1W2PP64 1363 aa18.75■□□□□ 0.59
SMARCA4-219ENST00000592604 ZBTB40Q9NUA8 1239 aa18.74■□□□□ 0.59
SMARCA4-219ENST00000592604 POGZQ7Z3K3 1410 aa18.74■□□□□ 0.59
SMARCA4-219ENST00000592604 NOB1Q9ULX3 412 aaKnown RBP18.74■□□□□ 0.59
SMARCA4-219ENST00000592604 SIGLEC1Q9BZZ2 1709 aa18.74■□□□□ 0.59
SMARCA4-219ENST00000592604 ANKRD26Q9UPS8 1709 aa18.74■□□□□ 0.59
SMARCA4-219ENST00000592604 MED14O60244 1454 aa18.74■□□□□ 0.59
SMARCA4-219ENST00000592604 GOLGA6L3A6NEY3 463 aa18.73■□□□□ 0.59
SMARCA4-219ENST00000592604 U2SURPO15042 1029 aaKnown RBP18.73■□□□□ 0.59
SMARCA4-219ENST00000592604 XRCC6P12956 609 aaKnown RBP eCLIP18.73■□□□□ 0.59
SMARCA4-219ENST00000592604 SPRYD3Q8NCJ5 442 aa18.72■□□□□ 0.59
SMARCA4-219ENST00000592604 PDE4CQ08493 712 aa18.72■□□□□ 0.59
SMARCA4-219ENST00000592604 TMEM57Q8N5G2 664 aa18.72■□□□□ 0.59
SMARCA4-219ENST00000592604 ZNF692Q9BU19 519 aaPredicted RBP18.72■□□□□ 0.59
SMARCA4-219ENST00000592604 CFAP74Q9C0B2 1584 aa18.72■□□□□ 0.59
SMARCA4-219ENST00000592604 IPO8O15397 1037 aaKnown RBP18.71■□□□□ 0.59
SMARCA4-219ENST00000592604 ZFYVE9O95405 1425 aa18.71■□□□□ 0.59
SMARCA4-219ENST00000592604 NCOA3Q9Y6Q9 1424 aa18.71■□□□□ 0.59
SMARCA4-219ENST00000592604 KIF16BQ96L93 1317 aa18.71■□□□□ 0.59
SMARCA4-219ENST00000592604 A0A0U1RQG5 324 aaPredicted RBP18.71■□□□□ 0.59
SMARCA4-219ENST00000592604 RBM25P49756 843 aaKnown RBP18.71■□□□□ 0.59
SMARCA4-219ENST00000592604 RRAGDQ9NQL2 400 aaPredicted RBP18.7■□□□□ 0.58
SMARCA4-219ENST00000592604 NUCB1Q02818 461 aa18.7■□□□□ 0.58
SMARCA4-219ENST00000592604 ALDH1L2Q3SY69 923 aa18.7■□□□□ 0.58
SMARCA4-219ENST00000592604 HSCBQ8IWL3 235 aa18.7■□□□□ 0.58
SMARCA4-219ENST00000592604 SNX21Q969T3 373 aa18.7■□□□□ 0.58
SMARCA4-219ENST00000592604 GGNBP2Q9H3C7 697 aa18.7■□□□□ 0.58
SMARCA4-219ENST00000592604 PNPLA6Q8IY17 1366 aa18.69■□□□□ 0.58
SMARCA4-219ENST00000592604 FYB1O15117 783 aa18.69■□□□□ 0.58
SMARCA4-219ENST00000592604 TRAK2O60296 914 aa18.69■□□□□ 0.58
SMARCA4-219ENST00000592604 DDIT3P35638 169 aa18.69■□□□□ 0.58
SMARCA4-219ENST00000592604 RIPK4P57078 832 aa18.69■□□□□ 0.58
SMARCA4-219ENST00000592604 ZMYND15Q9H091 742 aa18.69■□□□□ 0.58
SMARCA4-219ENST00000592604 PNNQ9H307 717 aaKnown RBP18.69■□□□□ 0.58
SMARCA4-219ENST00000592604 BRPF1P55201 1214 aaPredicted RBP18.68■□□□□ 0.58
SMARCA4-219ENST00000592604 ATAD2Q6PL18 1390 aa18.68■□□□□ 0.58
SMARCA4-219ENST00000592604 NUTM2DQ5VT03 806 aaPredicted RBP18.68■□□□□ 0.58
SMARCA4-219ENST00000592604 TERF2IPQ9NYB0 399 aa18.67■□□□□ 0.58
SMARCA4-219ENST00000592604 CD163L1Q9NR16 1453 aa18.67■□□□□ 0.58
SMARCA4-219ENST00000592604 CLTCQ00610 1675 aaKnown RBP18.66■□□□□ 0.58
SMARCA4-219ENST00000592604 DDX11L8A8MPP1 907 aa18.66■□□□□ 0.58
SMARCA4-219ENST00000592604 SRPK2P78362 688 aaKnown RBP18.66■□□□□ 0.58
SMARCA4-219ENST00000592604 ZNF428Q96B54 188 aa18.66■□□□□ 0.58
SMARCA4-219ENST00000592604 ARHGAP31Q2M1Z3 1444 aa18.66■□□□□ 0.58
SMARCA4-219ENST00000592604 DIAPH1O60610 1272 aaKnown RBP18.66■□□□□ 0.58
SMARCA4-219ENST00000592604 SAFB2Q14151 953 aaKnown RBP eCLIP18.65■□□□□ 0.582e-6■□□□□ 10.3
SMARCA4-219ENST00000592604 CDC42BPGQ6DT37 1551 aa18.65■□□□□ 0.58
SMARCA4-219ENST00000592604 PTPRMP28827 1452 aa18.64■□□□□ 0.58
SMARCA4-219ENST00000592604 CHD1LQ86WJ1 897 aa18.64■□□□□ 0.58
SMARCA4-219ENST00000592604 PDIA4P13667 645 aaKnown RBP18.64■□□□□ 0.57
SMARCA4-219ENST00000592604 GZF1Q9H116 711 aaPredicted RBP18.64■□□□□ 0.57
SMARCA4-219ENST00000592604 ISY1Q9ULR0 285 aaKnown RBP18.64■□□□□ 0.57
SMARCA4-219ENST00000592604 PPIP5K1Q6PFW1 1433 aa18.64■□□□□ 0.57
SMARCA4-219ENST00000592604 FCHSD2O94868 740 aa18.63■□□□□ 0.57
SMARCA4-219ENST00000592604 MRE11P49959 708 aa18.63■□□□□ 0.57
SMARCA4-219ENST00000592604 BMP2KLQ5H9B9 411 aa18.63■□□□□ 0.57
SMARCA4-219ENST00000592604 CIZ1Q9ULV3 898 aaPredicted RBP18.63■□□□□ 0.57
SMARCA4-219ENST00000592604 IDI1Q13907 227 aa18.63■□□□□ 0.57
SMARCA4-219ENST00000592604 LNPKQ9C0E8 428 aa18.62■□□□□ 0.57
SMARCA4-219ENST00000592604 PANK2Q9BZ23 570 aa18.61■□□□□ 0.57
SMARCA4-219ENST00000592604 SLC52A1Q9NWF4 448 aa18.61■□□□□ 0.57
SMARCA4-219ENST00000592604 CHMP4BQ9H444 224 aaKnown RBP18.6■□□□□ 0.57
SMARCA4-219ENST00000592604 STK26Q9P289 416 aa18.6■□□□□ 0.57
SMARCA4-219ENST00000592604 ZBTB7BO15156 539 aaPredicted RBP18.6■□□□□ 0.57
SMARCA4-219ENST00000592604 ARHGAP45Q92619 1136 aa18.6■□□□□ 0.57
SMARCA4-219ENST00000592604 GCC1Q96CN9 775 aa18.6■□□□□ 0.57
SMARCA4-219ENST00000592604 PIK3R4Q99570 1358 aa18.6■□□□□ 0.57
SMARCA4-219ENST00000592604 KIF20BQ96Q89 1820 aa18.59■□□□□ 0.57
SMARCA4-219ENST00000592604 VSIG10Q8N0Z9 540 aa18.59■□□□□ 0.57
SMARCA4-219ENST00000592604 LRRC7Q96NW7 1537 aa18.59■□□□□ 0.57
SMARCA4-219ENST00000592604 FAM135BQ49AJ0 1406 aa18.59■□□□□ 0.57
SMARCA4-219ENST00000592604 CLCN1P35523 988 aa18.59■□□□□ 0.57
SMARCA4-219ENST00000592604 KIF2CQ99661 725 aa18.59■□□□□ 0.57
SMARCA4-219ENST00000592604 HDGFL2Q7Z4V5 671 aaPredicted RBP18.58■□□□□ 0.57
SMARCA4-219ENST00000592604 MYO5BQ9ULV0 1848 aa18.58■□□□□ 0.56
SMARCA4-219ENST00000592604 MINK1Q8N4C8 1332 aaPredicted RBP18.58■□□□□ 0.56
SMARCA4-219ENST00000592604 TNPO1Q92973 898 aaKnown RBP18.57■□□□□ 0.56
SMARCA4-219ENST00000592604 ARXQ96QS3 562 aa18.57■□□□□ 0.56
SMARCA4-219ENST00000592604 PTCH1Q13635 1447 aa18.57■□□□□ 0.56
SMARCA4-219ENST00000592604 YTHDC2Q9H6S0 1430 aaKnown RBP18.57■□□□□ 0.56
SMARCA4-219ENST00000592604 NPM1P06748 294 aaKnown RBP eCLIP18.57■□□□□ 0.56
SMARCA4-219ENST00000592604 RAB3GAP1Q15042 981 aa18.57■□□□□ 0.56
SMARCA4-219ENST00000592604 GLIPR1L2Q4G1C9 344 aa18.57■□□□□ 0.56
SMARCA4-219ENST00000592604 PRAM1Q96QH2 718 aa18.57■□□□□ 0.56
SMARCA4-219ENST00000592604 GRPEL1Q9HAV7 217 aa18.57■□□□□ 0.56
SMARCA4-219ENST00000592604 VAMP4O75379 141 aa18.56■□□□□ 0.56
SMARCA4-219ENST00000592604 FGD1P98174 961 aa18.56■□□□□ 0.56
SMARCA4-219ENST00000592604 TMEM131LA2VDJ0 1609 aa18.56■□□□□ 0.56
SMARCA4-219ENST00000592604 MRPL50Q8N5N7 158 aaKnown RBP18.56■□□□□ 0.56
SMARCA4-219ENST00000592604 DIP2CQ9Y2E4 1556 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms