RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 SAMD7Q7Z3H4 446 aa12.5□□□□□ -0.41
VMP1-208ENST00000588617 TK2O00142 265 aa12.49□□□□□ -0.41
VMP1-208ENST00000588617 FBXO45P0C2W1 286 aa12.49□□□□□ -0.41
VMP1-208ENST00000588617 KMT5BQ4FZB7 885 aa12.49□□□□□ -0.41
VMP1-208ENST00000588617 DESI1Q6ICB0 168 aa12.49□□□□□ -0.41
VMP1-208ENST00000588617 CCER1Q8TC90 406 aaPredicted RBP12.49□□□□□ -0.41
VMP1-208ENST00000588617 ZMIZ1Q9ULJ6 1067 aa12.49□□□□□ -0.41
VMP1-208ENST00000588617 ZBBXA8MT70 800 aa12.48□□□□□ -0.41
VMP1-208ENST00000588617 LYPD8Q6UX82 237 aa12.48□□□□□ -0.41
VMP1-208ENST00000588617 STK32AQ8WU08 396 aa12.48□□□□□ -0.41
VMP1-208ENST00000588617 NOVA2Q9UNW9 492 aaKnown RBP12.48□□□□□ -0.41
VMP1-208ENST00000588617 IGSF3O75054 1194 aa12.47□□□□□ -0.41
VMP1-208ENST00000588617 SKIP12755 728 aa12.47□□□□□ -0.41
VMP1-208ENST00000588617 Q3C1V9 767 aa12.47□□□□□ -0.41
VMP1-208ENST00000588617 NFATC2IPQ8NCF5 419 aa12.47□□□□□ -0.41
VMP1-208ENST00000588617 USP17L3A6NCW0 530 aa12.46□□□□□ -0.41
VMP1-208ENST00000588617 USP17L4A6NCW7 530 aa12.46□□□□□ -0.41
VMP1-208ENST00000588617 HRO43593 1189 aa12.46□□□□□ -0.41
VMP1-208ENST00000588617 USP17L2Q6R6M4 530 aa12.46□□□□□ -0.41
VMP1-208ENST00000588617 USP17L1Q7RTZ2 530 aa12.46□□□□□ -0.41
VMP1-208ENST00000588617 PUS10Q3MIT2 529 aaKnown RBP12.45□□□□□ -0.42
VMP1-208ENST00000588617 MORN1Q5T089 497 aa12.45□□□□□ -0.42
VMP1-208ENST00000588617 SLC27A5Q9Y2P5 690 aa12.45□□□□□ -0.42
VMP1-208ENST00000588617 LOC105371045A0A1W2PR82 267 aa12.44□□□□□ -0.42
VMP1-208ENST00000588617 SLC4A5Q9BY07 1137 aa12.44□□□□□ -0.42
VMP1-208ENST00000588617 FKBPLQ9UIM3 349 aa12.44□□□□□ -0.42
VMP1-208ENST00000588617 USP17L5A8MUK1 530 aa12.43□□□□□ -0.42
VMP1-208ENST00000588617 TXNDC2Q86VQ3 553 aa12.43□□□□□ -0.42
VMP1-208ENST00000588617 PLEKHM2Q8IWE5 1019 aa12.42□□□□□ -0.42
VMP1-208ENST00000588617 DEPDC4Q8N2C3 294 aa12.42□□□□□ -0.42
VMP1-208ENST00000588617 ARID4AP29374 1257 aaPredicted RBP12.4□□□□□ -0.42
VMP1-208ENST00000588617 PHLDB3Q6NSJ2 640 aa12.4□□□□□ -0.42
VMP1-208ENST00000588617 MKRN1Q9UHC7 482 aaKnown RBP12.4□□□□□ -0.42
VMP1-208ENST00000588617 VPS9D1Q9Y2B5 631 aa12.4□□□□□ -0.42
VMP1-208ENST00000588617 FAM196BA6NMK8 535 aa12.39□□□□□ -0.43
VMP1-208ENST00000588617 ACTN4O43707 911 aaKnown RBP12.39□□□□□ -0.43
VMP1-208ENST00000588617 LARP1Q6PKG0 1096 aaKnown RBP12.39□□□□□ -0.43
VMP1-208ENST00000588617 LAPTM4BQ86VI4 370 aa12.39□□□□□ -0.43
VMP1-208ENST00000588617 FAM174AQ8TBP5 190 aa12.39□□□□□ -0.43
VMP1-208ENST00000588617 USP17L15C9J2P7 530 aa12.38□□□□□ -0.43
VMP1-208ENST00000588617 USP17L10C9JJH3 530 aa12.38□□□□□ -0.43
VMP1-208ENST00000588617 USP17L13C9JLJ4 530 aa12.38□□□□□ -0.43
VMP1-208ENST00000588617 USP17L12C9JPN9 530 aa12.38□□□□□ -0.43
VMP1-208ENST00000588617 USP17L11C9JVI0 530 aa12.38□□□□□ -0.43
VMP1-208ENST00000588617 USP17L21D6R901 530 aa12.38□□□□□ -0.43
VMP1-208ENST00000588617 USP17L18D6R9N7 530 aa12.38□□□□□ -0.43
VMP1-208ENST00000588617 USP17L22D6RA61 530 aa12.38□□□□□ -0.43
VMP1-208ENST00000588617 USP17L17D6RBQ6 530 aa12.38□□□□□ -0.43
VMP1-208ENST00000588617 USP17L19D6RCP7 530 aa12.38□□□□□ -0.43
VMP1-208ENST00000588617 USP17L20D6RJB6 530 aa12.38□□□□□ -0.43
VMP1-208ENST00000588617 USP17L24Q0WX57 530 aa12.38□□□□□ -0.43
VMP1-208ENST00000588617 CRTC2Q53ET0 693 aaPredicted RBP12.38□□□□□ -0.43
VMP1-208ENST00000588617 USB1Q9BQ65 265 aaKnown RBP12.38□□□□□ -0.43
VMP1-208ENST00000588617 ZC3H4Q9UPT8 1303 aaKnown RBP12.37□□□□□ -0.43
VMP1-208ENST00000588617 SSFA2P28290 1259 aa12.37□□□□□ -0.43
VMP1-208ENST00000588617 RNF19BQ6ZMZ0 732 aa12.37□□□□□ -0.43
VMP1-208ENST00000588617 FAM200AQ8TCP9 573 aa12.37□□□□□ -0.43
VMP1-208ENST00000588617 RASA1P20936 1047 aa12.36□□□□□ -0.43
VMP1-208ENST00000588617 SLFNL1Q499Z3 407 aa12.36□□□□□ -0.43
VMP1-208ENST00000588617 BLOC1S3Q6QNY0 202 aa12.36□□□□□ -0.43
VMP1-208ENST00000588617 RBM47A0AV96 593 aaKnown RBP12.35□□□□□ -0.43
VMP1-208ENST00000588617 UNCXA6NJT0 531 aa12.35□□□□□ -0.43
VMP1-208ENST00000588617 NBPF3Q9H094 633 aa12.35□□□□□ -0.43
VMP1-208ENST00000588617 MAP10Q9P2G4 905 aa12.35□□□□□ -0.43
VMP1-208ENST00000588617 SHROOM4Q9ULL8 1493 aa12.34□□□□□ -0.43
VMP1-208ENST00000588617 F12P00748 615 aaPredicted RBP12.34□□□□□ -0.43
VMP1-208ENST00000588617 PTK7Q13308 1070 aa12.34□□□□□ -0.43
VMP1-208ENST00000588617 NCOA4Q13772 614 aa12.34□□□□□ -0.43
VMP1-208ENST00000588617 ZFRQ96KR1 1074 aaKnown RBP12.34□□□□□ -0.43
VMP1-208ENST00000588617 CDCA7Q9BWT1 371 aaPredicted RBP12.34□□□□□ -0.43
VMP1-208ENST00000588617 CEP126Q9P2H0 1117 aa12.34□□□□□ -0.43
VMP1-208ENST00000588617 ATP5J2-PTCD1G3V325 749 aa12.33□□□□□ -0.44
VMP1-208ENST00000588617 CTHP32929 405 aa12.33□□□□□ -0.44
VMP1-208ENST00000588617 SLAIN2Q9P270 581 aa12.33□□□□□ -0.44
VMP1-208ENST00000588617 RNF135Q8IUD6 432 aa12.32□□□□□ -0.44
VMP1-208ENST00000588617 ZNF592Q92610 1267 aa12.32□□□□□ -0.44
VMP1-208ENST00000588617 CLP1Q92989 425 aaKnown RBP12.32□□□□□ -0.44
VMP1-208ENST00000588617 PRR14Q9BWN1 585 aa12.32□□□□□ -0.44
VMP1-208ENST00000588617 ERCC3P19447 782 aa12.31□□□□□ -0.44
VMP1-208ENST00000588617 FAM69CQ0P6D2 419 aa12.31□□□□□ -0.44
VMP1-208ENST00000588617 BRICD5Q6PL45 260 aa12.31□□□□□ -0.44
VMP1-208ENST00000588617 BHMG1C9JSJ3 638 aaPredicted RBP12.3□□□□□ -0.44
VMP1-208ENST00000588617 PTK2Q05397 1052 aa12.3□□□□□ -0.44
VMP1-208ENST00000588617 PTPRNQ16849 979 aa12.3□□□□□ -0.44
VMP1-208ENST00000588617 ANKMY2Q8IV38 441 aa12.3□□□□□ -0.44
VMP1-208ENST00000588617 LRCH3Q96II8 777 aa12.3□□□□□ -0.44
VMP1-208ENST00000588617 SALL2Q9Y467 1007 aaPredicted RBP12.3□□□□□ -0.44
VMP1-208ENST00000588617 PCDHB9Q9Y5E1 797 aa12.3□□□□□ -0.44
VMP1-208ENST00000588617 SOWAHDA6NJG2 315 aa12.29□□□□□ -0.44
VMP1-208ENST00000588617 LZTS3O60299 673 aaPredicted RBP12.29□□□□□ -0.44
VMP1-208ENST00000588617 JUNDP17535 347 aa12.29□□□□□ -0.44
VMP1-208ENST00000588617 ATP2B4P23634 1241 aa12.29□□□□□ -0.44
VMP1-208ENST00000588617 DNAJC14Q6Y2X3 702 aaPredicted RBP12.29□□□□□ -0.44
VMP1-208ENST00000588617 PLPP7Q8NBV4 271 aa12.29□□□□□ -0.44
VMP1-208ENST00000588617 FMNL1O95466 1100 aaPredicted RBP12.28□□□□□ -0.44
VMP1-208ENST00000588617 SERPINB4P48594 390 aa12.28□□□□□ -0.44
VMP1-208ENST00000588617 MCCD1P59942 119 aaPredicted RBP12.28□□□□□ -0.44
VMP1-208ENST00000588617 KCTD12Q96CX2 325 aaKnown RBP12.28□□□□□ -0.44
VMP1-208ENST00000588617 PHTF2Q8N3S3 785 aa12.27□□□□□ -0.45
VMP1-208ENST00000588617 STAC3Q96MF2 364 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms