RNA–Protein interactions for RNA: ENST00000580646.5

GGA3-209, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 4

Gene GGA3, Length 829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-209ENST00000580646 PLEKHG3A1L390 1219 aa13.95□□□□□ -0.18
GGA3-209ENST00000580646 SLC24A1O60721 1099 aa13.95□□□□□ -0.18
GGA3-209ENST00000580646 PAK3O75914 559 aaPredicted RBP13.95□□□□□ -0.18
GGA3-209ENST00000580646 SRPK2P78362 688 aaKnown RBP13.95□□□□□ -0.18
GGA3-209ENST00000580646 UNC5CLQ8IV45 518 aa13.95□□□□□ -0.18
GGA3-209ENST00000580646 USP47Q96K76 1375 aa13.95□□□□□ -0.18
GGA3-209ENST00000580646 RGS12O14924 1447 aa13.94□□□□□ -0.18
GGA3-209ENST00000580646 ACEP12821 1306 aa13.93□□□□□ -0.18
GGA3-209ENST00000580646 GJD4Q96KN9 370 aaPredicted RBP13.93□□□□□ -0.18
GGA3-209ENST00000580646 CABP2Q9NPB3 220 aa13.93□□□□□ -0.18
GGA3-209ENST00000580646 SLIT2O94813 1529 aa13.93□□□□□ -0.18
GGA3-209ENST00000580646 FAM83GA6ND36 823 aa13.92□□□□□ -0.18
GGA3-209ENST00000580646 POLR3AO14802 1390 aaPredicted RBP13.92□□□□□ -0.18
GGA3-209ENST00000580646 EVC2Q86UK5 1308 aa13.9□□□□□ -0.18
GGA3-209ENST00000580646 TRPM3Q9HCF6 1732 aaPredicted RBP13.9□□□□□ -0.18
GGA3-209ENST00000580646 MARF1Q9Y4F3 1742 aaKnown RBP13.9□□□□□ -0.18
GGA3-209ENST00000580646 ST20-MTHFSA0A0A6YYL1 179 aa13.89□□□□□ -0.19
GGA3-209ENST00000580646 ZEB1P37275 1124 aaPredicted RBP13.89□□□□□ -0.19
GGA3-209ENST00000580646 VPS72Q15906 364 aa13.89□□□□□ -0.19
GGA3-209ENST00000580646 PUS7Q96PZ0 661 aaKnown RBP13.89□□□□□ -0.19
GGA3-209ENST00000580646 TESK2Q96S53 571 aa13.89□□□□□ -0.19
GGA3-209ENST00000580646 CABP1Q9NZU7 370 aa13.89□□□□□ -0.19
GGA3-209ENST00000580646 PPIP5K1Q6PFW1 1433 aa13.89□□□□□ -0.19
GGA3-209ENST00000580646 EIF4G2P78344 907 aaKnown RBP eCLIP13.88□□□□□ -0.19
GGA3-209ENST00000580646 NUTM2GQ5VZR2 741 aa13.88□□□□□ -0.19
GGA3-209ENST00000580646 ALS2Q96Q42 1657 aa13.88□□□□□ -0.19
GGA3-209ENST00000580646 ABTB2Q8N961 1025 aa13.87□□□□□ -0.19
GGA3-209ENST00000580646 BTG4Q9NY30 223 aa13.87□□□□□ -0.19
GGA3-209ENST00000580646 CCDC9Q9Y3X0 531 aaKnown RBP13.87□□□□□ -0.19
GGA3-209ENST00000580646 ATAD2Q6PL18 1390 aa13.86□□□□□ -0.19
GGA3-209ENST00000580646 PRDM11Q9NQV5 511 aa13.86□□□□□ -0.19
GGA3-209ENST00000580646 AKAP12Q02952 1782 aa13.86□□□□□ -0.19
GGA3-209ENST00000580646 ABCA3Q99758 1704 aa13.84□□□□□ -0.19
GGA3-209ENST00000580646 TMF1P82094 1093 aa13.84□□□□□ -0.19
GGA3-209ENST00000580646 NLRP13Q86W25 1043 aa13.84□□□□□ -0.19
GGA3-209ENST00000580646 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.84□□□□□ -0.19
GGA3-209ENST00000580646 BRD4O60885 1362 aaPredicted RBP13.83□□□□□ -0.19
GGA3-209ENST00000580646 ONECUT3O60422 494 aaPredicted RBP13.83□□□□□ -0.2
GGA3-209ENST00000580646 ZC3H6P61129 1189 aaKnown RBP13.83□□□□□ -0.2
GGA3-209ENST00000580646 CDCA8Q53HL2 280 aa13.83□□□□□ -0.2
GGA3-209ENST00000580646 SEPT12Q8IYM1 358 aa13.83□□□□□ -0.2
GGA3-209ENST00000580646 GLI3P10071 1580 aa13.83□□□□□ -0.2
GGA3-209ENST00000580646 KIAA0232Q92628 1395 aa13.83□□□□□ -0.2
GGA3-209ENST00000580646 NINLQ9Y2I6 1382 aa13.83□□□□□ -0.2
GGA3-209ENST00000580646 HSPA5P11021 654 aaKnown RBP13.82□□□□□ -0.2
GGA3-209ENST00000580646 CHRNA2Q15822 529 aa13.82□□□□□ -0.2
GGA3-209ENST00000580646 ZNF692Q9BU19 519 aaPredicted RBP13.82□□□□□ -0.2
GGA3-209ENST00000580646 USP6P35125 1406 aa13.81□□□□□ -0.2
GGA3-209ENST00000580646 MON2Q7Z3U7 1717 aa13.81□□□□□ -0.2
GGA3-209ENST00000580646 GCP02774 474 aa13.81□□□□□ -0.2
GGA3-209ENST00000580646 USP19O94966 1318 aa13.81□□□□□ -0.2
GGA3-209ENST00000580646 MYOM1P52179 1685 aa13.81□□□□□ -0.2
GGA3-209ENST00000580646 NWD2Q9ULI1 1742 aa13.81□□□□□ -0.2
GGA3-209ENST00000580646 PLCH1Q4KWH8 1693 aa13.8□□□□□ -0.2
GGA3-209ENST00000580646 NLRP6P59044 892 aa13.8□□□□□ -0.2
GGA3-209ENST00000580646 COL14A1Q05707 1796 aaKnown RBP13.8□□□□□ -0.2
GGA3-209ENST00000580646 FAM98CQ17RN3 349 aaKnown RBP13.79□□□□□ -0.2
GGA3-209ENST00000580646 SPATA31A5Q5VU36 1347 aa13.79□□□□□ -0.2
GGA3-209ENST00000580646 SPATA31A7Q8IWB4 1347 aa13.79□□□□□ -0.2
GGA3-209ENST00000580646 SSH2Q76I76 1423 aa13.79□□□□□ -0.2
GGA3-209ENST00000580646 NRKQ7Z2Y5 1582 aa13.79□□□□□ -0.2
GGA3-209ENST00000580646 CRYBG1Q9Y4K1 1723 aa13.78□□□□□ -0.2
GGA3-209ENST00000580646 A0A0G2JS52 829 aa13.78□□□□□ -0.2
GGA3-209ENST00000580646 CCDC125Q86Z20 511 aa13.78□□□□□ -0.2
GGA3-209ENST00000580646 STRN4Q9NRL3 753 aa13.78□□□□□ -0.2
GGA3-209ENST00000580646 TTC21BQ7Z4L5 1316 aa13.78□□□□□ -0.2
GGA3-209ENST00000580646 CPDO75976 1380 aa13.78□□□□□ -0.2
GGA3-209ENST00000580646 EVA1CP58658 441 aa13.77□□□□□ -0.21
GGA3-209ENST00000580646 CPSF1Q10570 1443 aaKnown RBP13.77□□□□□ -0.21
GGA3-209ENST00000580646 KRT27Q7Z3Y8 459 aa13.77□□□□□ -0.21
GGA3-209ENST00000580646 EP400Q96L91 3159 aa13.77□□□□□ -0.21
GGA3-209ENST00000580646 CD163L1Q9NR16 1453 aa13.76□□□□□ -0.21
GGA3-209ENST00000580646 ZRANB1Q9UGI0 708 aa13.76□□□□□ -0.21
GGA3-209ENST00000580646 NRAPQ86VF7 1730 aa13.76□□□□□ -0.21
GGA3-209ENST00000580646 PHRF1Q9P1Y6 1649 aaKnown RBP13.75□□□□□ -0.21
GGA3-209ENST00000580646 KTN1Q86UP2 1357 aaKnown RBP13.75□□□□□ -0.21
GGA3-209ENST00000580646 SPATA31A1Q5TZJ5 1347 aa13.75□□□□□ -0.21
GGA3-209ENST00000580646 TTC21AQ8NDW8 1320 aa13.75□□□□□ -0.21
GGA3-209ENST00000580646 TMC1Q8TDI8 760 aa13.75□□□□□ -0.21
GGA3-209ENST00000580646 USP54Q70EL1 1684 aa13.75□□□□□ -0.21
GGA3-209ENST00000580646 ZBTB7CA1YPR0 619 aa13.74□□□□□ -0.21
GGA3-209ENST00000580646 SLC12A5Q9H2X9 1139 aa13.74□□□□□ -0.21
GGA3-209ENST00000580646 LARP1Q6PKG0 1096 aaKnown RBP13.73□□□□□ -0.21
GGA3-209ENST00000580646 CAMTA1Q9Y6Y1 1673 aa13.72□□□□□ -0.21
GGA3-209ENST00000580646 ANKRD36BQ8N2N9 1353 aa13.72□□□□□ -0.21
GGA3-209ENST00000580646 HDGFL2Q7Z4V5 671 aaPredicted RBP13.72□□□□□ -0.21
GGA3-209ENST00000580646 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.72□□□□□ -0.21
GGA3-209ENST00000580646 KCNH5Q8NCM2 988 aa13.72□□□□□ -0.21
GGA3-209ENST00000580646 TERF2IPQ9NYB0 399 aa13.72□□□□□ -0.21
GGA3-209ENST00000580646 USP35Q9P2H5 1018 aa13.72□□□□□ -0.21
GGA3-209ENST00000580646 AATKQ6ZMQ8 1374 aa13.71□□□□□ -0.21
GGA3-209ENST00000580646 SLIT3O75094 1523 aa13.71□□□□□ -0.21
GGA3-209ENST00000580646 BARGINQ6ZT62 677 aa13.71□□□□□ -0.21
GGA3-209ENST00000580646 PIK3C2AO00443 1686 aa13.71□□□□□ -0.21
GGA3-209ENST00000580646 BLMP54132 1417 aaPredicted RBP13.71□□□□□ -0.22
GGA3-209ENST00000580646 EDC4Q6P2E9 1401 aaKnown RBP13.71□□□□□ -0.22
GGA3-209ENST00000580646 A0A1W2PP64 1363 aa13.71□□□□□ -0.22
GGA3-209ENST00000580646 SOX12O15370 315 aa13.7□□□□□ -0.22
GGA3-209ENST00000580646 SF3B2Q13435 895 aaKnown RBP13.7□□□□□ -0.22
GGA3-209ENST00000580646 ARHGEF25Q86VW2 580 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms