RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 VGFO15240 615 aaPredicted RBP12.12□□□□□ -0.47
CCDC40-212ENST00000574799 NRKQ7Z2Y5 1582 aa12.12□□□□□ -0.47
CCDC40-212ENST00000574799 SPINK5Q9NQ38 1064 aaPredicted RBP12.12□□□□□ -0.47
CCDC40-212ENST00000574799 KNSTRNQ9Y448 316 aa12.12□□□□□ -0.47
CCDC40-212ENST00000574799 FER1L4A9Z1Z3 1794 aa12.12□□□□□ -0.47
CCDC40-212ENST00000574799 A0A1W2PP64 1363 aa12.12□□□□□ -0.47
CCDC40-212ENST00000574799 DMRT2Q9Y5R5 561 aa12.12□□□□□ -0.47
CCDC40-212ENST00000574799 SENP3Q9H4L4 574 aaPredicted RBP12.11□□□□□ -0.47
CCDC40-212ENST00000574799 RIMS2Q9UQ26 1411 aa12.11□□□□□ -0.47
CCDC40-212ENST00000574799 MCM4P33991 863 aa12.11□□□□□ -0.47
CCDC40-212ENST00000574799 CDCA8Q53HL2 280 aa12.11□□□□□ -0.47
CCDC40-212ENST00000574799 HSCBQ8IWL3 235 aa12.11□□□□□ -0.47
CCDC40-212ENST00000574799 METP08581 1390 aa12.11□□□□□ -0.47
CCDC40-212ENST00000574799 ANKRD36BQ8N2N9 1353 aa12.11□□□□□ -0.47
CCDC40-212ENST00000574799 PPP6R1Q9UPN7 881 aa12.1□□□□□ -0.47
CCDC40-212ENST00000574799 MFAP1P55081 439 aaKnown RBP12.1□□□□□ -0.47
CCDC40-212ENST00000574799 TRMT2AQ8IZ69 625 aaKnown RBP12.1□□□□□ -0.47
CCDC40-212ENST00000574799 POLR3AO14802 1390 aaPredicted RBP12.1□□□□□ -0.47
CCDC40-212ENST00000574799 TPM2P07951 284 aa12.1□□□□□ -0.47
CCDC40-212ENST00000574799 NCLP19338 710 aaKnown RBP12.1□□□□□ -0.47
CCDC40-212ENST00000574799 KIAA1211Q6ZU35 1233 aa12.1□□□□□ -0.47
CCDC40-212ENST00000574799 GRPEL1Q9HAV7 217 aa12.1□□□□□ -0.47
CCDC40-212ENST00000574799 PUS7Q96PZ0 661 aaKnown RBP12.09□□□□□ -0.47
CCDC40-212ENST00000574799 MED14O60244 1454 aa12.09□□□□□ -0.47
CCDC40-212ENST00000574799 MAPK8IP3Q9UPT6 1336 aa12.09□□□□□ -0.47
CCDC40-212ENST00000574799 ABCC11Q96J66 1382 aa12.09□□□□□ -0.47
CCDC40-212ENST00000574799 CCDC146Q8IYE0 955 aa12.09□□□□□ -0.47
CCDC40-212ENST00000574799 CABP2Q9NPB3 220 aa12.09□□□□□ -0.47
CCDC40-212ENST00000574799 CHMP5Q9NZZ3 219 aa12.08□□□□□ -0.47
CCDC40-212ENST00000574799 COG6Q9Y2V7 657 aa12.08□□□□□ -0.47
CCDC40-212ENST00000574799 MAP2P11137 1827 aaKnown RBP12.08□□□□□ -0.48
CCDC40-212ENST00000574799 ADAMTS13Q76LX8 1427 aa12.08□□□□□ -0.48
CCDC40-212ENST00000574799 NEUROD2Q15784 382 aa12.08□□□□□ -0.48
CCDC40-212ENST00000574799 TECPR2O15040 1411 aa12.08□□□□□ -0.48
CCDC40-212ENST00000574799 PDCL3Q9H2J4 239 aa12.07□□□□□ -0.48
CCDC40-212ENST00000574799 ZBTB7CA1YPR0 619 aa12.07□□□□□ -0.48
CCDC40-212ENST00000574799 DDX11L8A8MPP1 907 aa12.07□□□□□ -0.48
CCDC40-212ENST00000574799 RGPD8O14715 1765 aaPredicted RBP12.07□□□□□ -0.48
CCDC40-212ENST00000574799 HSP90AB1P08238 724 aaKnown RBP12.07□□□□□ -0.48
CCDC40-212ENST00000574799 DUSP27Q5VZP5 1158 aa12.07□□□□□ -0.48
CCDC40-212ENST00000574799 MARF1Q9Y4F3 1742 aaKnown RBP12.07□□□□□ -0.48
CCDC40-212ENST00000574799 SEC24BO95487 1268 aa12.06□□□□□ -0.48
CCDC40-212ENST00000574799 GOLGA6L22H0YM25 854 aa12.06□□□□□ -0.48
CCDC40-212ENST00000574799 KDM2BQ8NHM5 1336 aa12.06□□□□□ -0.48
CCDC40-212ENST00000574799 PRAM1Q96QH2 718 aa12.06□□□□□ -0.48
CCDC40-212ENST00000574799 TBC1D2Q9BYX2 928 aa12.05□□□□□ -0.48
CCDC40-212ENST00000574799 FOXD4L1Q9NU39 408 aa12.05□□□□□ -0.48
CCDC40-212ENST00000574799 CDC42BPGQ6DT37 1551 aa12.05□□□□□ -0.48
CCDC40-212ENST00000574799 BCAR3O75815 825 aa12.04□□□□□ -0.48
CCDC40-212ENST00000574799 SAFB2Q14151 953 aaKnown RBP eCLIP12.04□□□□□ -0.48
CCDC40-212ENST00000574799 GBP4Q96PP9 640 aa12.04□□□□□ -0.48
CCDC40-212ENST00000574799 PHF23Q9BUL5 403 aaPredicted RBP12.04□□□□□ -0.48
CCDC40-212ENST00000574799 R3HCC1Q9Y3T6 440 aaKnown RBP12.04□□□□□ -0.48
CCDC40-212ENST00000574799 ITSN1Q15811 1721 aa12.04□□□□□ -0.48
CCDC40-212ENST00000574799 NALCNQ8IZF0 1738 aa12.04□□□□□ -0.48
CCDC40-212ENST00000574799 TNNT2P45379 298 aaPredicted RBP12.04□□□□□ -0.48
CCDC40-212ENST00000574799 MLECQ14165 292 aa12.04□□□□□ -0.48
CCDC40-212ENST00000574799 PTPRUQ92729 1446 aa12.04□□□□□ -0.48
CCDC40-212ENST00000574799 SLIT1O75093 1534 aa12.04□□□□□ -0.48
CCDC40-212ENST00000574799 STK26Q9P289 416 aa12.04□□□□□ -0.48
CCDC40-212ENST00000574799 CPSF1Q10570 1443 aaKnown RBP12.04□□□□□ -0.48
CCDC40-212ENST00000574799 ARHGAP23Q9P227 1491 aa12.03□□□□□ -0.48
CCDC40-212ENST00000574799 PANK1Q8TE04 598 aa12.03□□□□□ -0.48
CCDC40-212ENST00000574799 CLUAP1Q96AJ1 413 aa12.03□□□□□ -0.48
CCDC40-212ENST00000574799 DNTTIP2Q5QJE6 756 aaKnown RBP12.03□□□□□ -0.48
CCDC40-212ENST00000574799 WAPLQ7Z5K2 1190 aa12.03□□□□□ -0.48
CCDC40-212ENST00000574799 EVC2Q86UK5 1308 aa12.03□□□□□ -0.48
CCDC40-212ENST00000574799 XRN1Q8IZH2 1706 aaKnown RBP12.03□□□□□ -0.48
CCDC40-212ENST00000574799 SLC24A1O60721 1099 aa12.02□□□□□ -0.49
CCDC40-212ENST00000574799 ATP7BP35670 1465 aa12.02□□□□□ -0.49
CCDC40-212ENST00000574799 IGHDP01880 384 aa12.02□□□□□ -0.49
CCDC40-212ENST00000574799 CGNL1Q0VF96 1302 aa12.02□□□□□ -0.49
CCDC40-212ENST00000574799 RIMS1Q86UR5 1692 aaKnown RBP12.01□□□□□ -0.49
CCDC40-212ENST00000574799 DLG5Q8TDM6 1919 aa12.01□□□□□ -0.49
CCDC40-212ENST00000574799 TMEM2Q9UHN6 1383 aa12.01□□□□□ -0.49
CCDC40-212ENST00000574799 APAF1O14727 1248 aa12.01□□□□□ -0.49
CCDC40-212ENST00000574799 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.01□□□□□ -0.49
CCDC40-212ENST00000574799 MINK1Q8N4C8 1332 aaPredicted RBP12.01□□□□□ -0.49
CCDC40-212ENST00000574799 NKTRP30414 1462 aaKnown RBP12.01□□□□□ -0.49
CCDC40-212ENST00000574799 NINLQ9Y2I6 1382 aa12□□□□□ -0.49
CCDC40-212ENST00000574799 PMFBP1Q8TBY8 1022 aa12□□□□□ -0.49
CCDC40-212ENST00000574799 PEAK1Q9H792 1746 aa12□□□□□ -0.49
CCDC40-212ENST00000574799 PNPLA6Q8IY17 1366 aa12□□□□□ -0.49
CCDC40-212ENST00000574799 TNRQ92752 1358 aa12□□□□□ -0.49
CCDC40-212ENST00000574799 SLFN5Q08AF3 891 aa12□□□□□ -0.49
CCDC40-212ENST00000574799 C22orf23Q9BZE7 217 aa12□□□□□ -0.49
CCDC40-212ENST00000574799 ROBO2Q9HCK4 1378 aa12□□□□□ -0.49
CCDC40-212ENST00000574799 FYB1O15117 783 aa12□□□□□ -0.49
CCDC40-212ENST00000574799 PTMAP06454 111 aaKnown RBP12□□□□□ -0.49
CCDC40-212ENST00000574799 NSD2O96028 1365 aa12□□□□□ -0.49
CCDC40-212ENST00000574799 LTKP29376 864 aa11.99□□□□□ -0.49
CCDC40-212ENST00000574799 BCL2L13Q9BXK5 485 aa11.99□□□□□ -0.49
CCDC40-212ENST00000574799 NASPP49321 788 aaPredicted RBP11.99□□□□□ -0.49
CCDC40-212ENST00000574799 NCKAP5LQ9HCH0 1330 aa11.99□□□□□ -0.49
CCDC40-212ENST00000574799 FAM135BQ49AJ0 1406 aa11.99□□□□□ -0.49
CCDC40-212ENST00000574799 FTSJ3Q8IY81 847 aaKnown RBP11.98□□□□□ -0.49
CCDC40-212ENST00000574799 CDK19Q9BWU1 502 aa11.98□□□□□ -0.49
CCDC40-212ENST00000574799 RWDD1Q9H446 243 aaPredicted RBP11.98□□□□□ -0.49
CCDC40-212ENST00000574799 PRDM10Q9NQV6 1147 aa11.98□□□□□ -0.49
CCDC40-212ENST00000574799 RGPD1P0DJD0 1748 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms