RNA–Protein interactions for RNA: ENST00000574322.5

CTDNEP1-210, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-210ENST00000574322 FKBP8Q14318 412 aa37.81■■■■□ 3.64
CTDNEP1-210ENST00000574322 ITSN1Q15811 1721 aa37.79■■■■□ 3.64
CTDNEP1-210ENST00000574322 CFAP53Q96M91 514 aa37.78■■■■□ 3.64
CTDNEP1-210ENST00000574322 ZNF692Q9BU19 519 aaPredicted RBP37.78■■■■□ 3.64
CTDNEP1-210ENST00000574322 C19orf44Q9H6X5 657 aa37.78■■■■□ 3.64
CTDNEP1-210ENST00000574322 XIRP1Q702N8 1843 aaKnown RBP37.78■■■■□ 3.64
CTDNEP1-210ENST00000574322 MSH6P52701 1360 aa37.78■■■■□ 3.64
CTDNEP1-210ENST00000574322 PLEKHG3A1L390 1219 aa37.76■■■■□ 3.64
CTDNEP1-210ENST00000574322 CERKQ8TCT0 537 aa37.76■■■■□ 3.64
CTDNEP1-210ENST00000574322 NALCNQ8IZF0 1738 aa37.75■■■■□ 3.63
CTDNEP1-210ENST00000574322 SENP3-EIF4A1A0A087X0R7 540 aa37.74■■■■□ 3.63
CTDNEP1-210ENST00000574322 NGEFQ8N5V2 710 aa37.73■■■■□ 3.63
CTDNEP1-210ENST00000574322 ATF3P18847 181 aa37.69■■■■□ 3.62
CTDNEP1-210ENST00000574322 ZNF521Q96K83 1311 aa37.68■■■■□ 3.62
CTDNEP1-210ENST00000574322 COL3A1P02461 1466 aaPredicted RBP37.68■■■■□ 3.62
CTDNEP1-210ENST00000574322 RNF123Q5XPI4 1314 aa37.67■■■■□ 3.62
CTDNEP1-210ENST00000574322 IQSEC2Q5JU85 1478 aa37.67■■■■□ 3.62
CTDNEP1-210ENST00000574322 DCCP43146 1447 aa37.67■■■■□ 3.62
CTDNEP1-210ENST00000574322 SUGP2Q8IX01 1082 aaKnown RBP eCLIP37.67■■■■□ 3.62
CTDNEP1-210ENST00000574322 SALL2Q9Y467 1007 aaPredicted RBP37.67■■■■□ 3.62
CTDNEP1-210ENST00000574322 NRKQ7Z2Y5 1582 aa37.67■■■■□ 3.62
CTDNEP1-210ENST00000574322 PNPLA6Q8IY17 1366 aa37.66■■■■□ 3.62
CTDNEP1-210ENST00000574322 ERICH6BQ5W0A0 696 aa37.66■■■■□ 3.62
CTDNEP1-210ENST00000574322 CADPS2Q86UW7 1296 aa37.66■■■■□ 3.62
CTDNEP1-210ENST00000574322 ANKARQ7Z5J8 1434 aa37.66■■■■□ 3.62
CTDNEP1-210ENST00000574322 ACEP12821 1306 aa37.61■■■■□ 3.61
CTDNEP1-210ENST00000574322 FMN2Q9NZ56 1722 aa37.6■■■■□ 3.61
CTDNEP1-210ENST00000574322 AATKQ6ZMQ8 1374 aa37.6■■■■□ 3.61
CTDNEP1-210ENST00000574322 CCDC146Q8IYE0 955 aa37.6■■■■□ 3.61
CTDNEP1-210ENST00000574322 NUTM2FA1L443 756 aa37.59■■■■□ 3.61
CTDNEP1-210ENST00000574322 USP6P35125 1406 aa37.59■■■■□ 3.61
CTDNEP1-210ENST00000574322 APAF1O14727 1248 aa37.58■■■■□ 3.61
CTDNEP1-210ENST00000574322 NME9Q86XW9 330 aa37.58■■■■□ 3.61
CTDNEP1-210ENST00000574322 SSH2Q76I76 1423 aa37.57■■■■□ 3.6
CTDNEP1-210ENST00000574322 RUNDC1Q96C34 613 aa37.57■■■■□ 3.6
CTDNEP1-210ENST00000574322 CDCA7LQ96GN5 454 aa37.57■■■■□ 3.6
CTDNEP1-210ENST00000574322 NCBP3Q53F19 620 aaKnown RBP37.56■■■■□ 3.6
CTDNEP1-210ENST00000574322 TTC21BQ7Z4L5 1316 aa37.55■■■■□ 3.6
CTDNEP1-210ENST00000574322 TOM1O60784 492 aa37.53■■■■□ 3.6
CTDNEP1-210ENST00000574322 RGPD8O14715 1765 aaPredicted RBP37.53■■■■□ 3.6
CTDNEP1-210ENST00000574322 POLKQ9UBT6 870 aa37.53■■■■□ 3.6
CTDNEP1-210ENST00000574322 MAP2P11137 1827 aaKnown RBP37.53■■■■□ 3.6
CTDNEP1-210ENST00000574322 MST1RQ04912 1400 aa37.52■■■■□ 3.6
CTDNEP1-210ENST00000574322 UBAP1LF5GYI3 381 aa37.52■■■■□ 3.6
CTDNEP1-210ENST00000574322 COG3Q96JB2 828 aa37.52■■■■□ 3.6
CTDNEP1-210ENST00000574322 SLAIN2Q9P270 581 aa37.52■■■■□ 3.6
CTDNEP1-210ENST00000574322 GOLGA2Q08379 1002 aa37.5■■■■□ 3.59
CTDNEP1-210ENST00000574322 C1orf167Q5SNV9 1468 aa37.48■■■■□ 3.59
CTDNEP1-210ENST00000574322 TTC21AQ8NDW8 1320 aa37.47■■■■□ 3.59
CTDNEP1-210ENST00000574322 OVOS2A0A0J9YW53 1432 aa37.46■■■■□ 3.59
CTDNEP1-210ENST00000574322 OVOS2Q6IE36 1432 aa37.46■■■■□ 3.59
CTDNEP1-210ENST00000574322 CDK12Q9NYV4 1490 aaPredicted RBP37.46■■■■□ 3.59
CTDNEP1-210ENST00000574322 U2AF1L5P0DN76 240 aaPredicted RBP37.46■■■■□ 3.59
CTDNEP1-210ENST00000574322 U2AF1Q01081 240 aaKnown RBP eCLIP37.46■■■■□ 3.59
CTDNEP1-210ENST00000574322 TRMT2AQ8IZ69 625 aaKnown RBP37.46■■■■□ 3.59
CTDNEP1-210ENST00000574322 DIAPH1O60610 1272 aaKnown RBP37.45■■■■□ 3.59
CTDNEP1-210ENST00000574322 ZRANB1Q9UGI0 708 aa37.45■■■■□ 3.59
CTDNEP1-210ENST00000574322 RCAN3Q9UKA8 241 aa37.44■■■■□ 3.58
CTDNEP1-210ENST00000574322 PHF23Q9BUL5 403 aaPredicted RBP37.44■■■■□ 3.58
CTDNEP1-210ENST00000574322 SLFN5Q08AF3 891 aa37.43■■■■□ 3.58
CTDNEP1-210ENST00000574322 ESCO1Q5FWF5 840 aa37.43■■■■□ 3.58
CTDNEP1-210ENST00000574322 DUSP27Q5VZP5 1158 aa37.43■■■■□ 3.58
CTDNEP1-210ENST00000574322 TCP11L2Q8N4U5 519 aa37.41■■■■□ 3.58
CTDNEP1-210ENST00000574322 CCDC27Q2M243 656 aa37.41■■■■□ 3.58
CTDNEP1-210ENST00000574322 ORAI2Q96SN7 254 aa37.41■■■■□ 3.58
CTDNEP1-210ENST00000574322 IRX6P78412 446 aaPredicted RBP37.4■■■■□ 3.58
CTDNEP1-210ENST00000574322 USP31Q70CQ4 1352 aa37.39■■■■□ 3.58
CTDNEP1-210ENST00000574322 PIP4K2BP78356 416 aa37.39■■■■□ 3.58
CTDNEP1-210ENST00000574322 NGDNQ8NEJ9 315 aaKnown RBP37.39■■■■□ 3.58
CTDNEP1-210ENST00000574322 PMFBP1Q8TBY8 1022 aa37.39■■■■□ 3.58
CTDNEP1-210ENST00000574322 WWC1Q8IX03 1113 aa37.38■■■■□ 3.57
CTDNEP1-210ENST00000574322 PLEKHF1Q96S99 279 aa37.38■■■■□ 3.57
CTDNEP1-210ENST00000574322 E9PSI1 815 aa37.36■■■■□ 3.57
CTDNEP1-210ENST00000574322 FBLN1P23142 703 aa37.36■■■■□ 3.57
CTDNEP1-210ENST00000574322 BRINP3Q76B58 766 aa37.36■■■■□ 3.57
CTDNEP1-210ENST00000574322 PNNQ9H307 717 aaKnown RBP37.35■■■■□ 3.57
CTDNEP1-210ENST00000574322 EMILIN1Q9Y6C2 1016 aa37.35■■■■□ 3.57
CTDNEP1-210ENST00000574322 U2SURPO15042 1029 aaKnown RBP37.34■■■■□ 3.57
CTDNEP1-210ENST00000574322 PHF8Q9UPP1 1060 aa37.34■■■■□ 3.57
CTDNEP1-210ENST00000574322 USP54Q70EL1 1684 aa37.31■■■■□ 3.56
CTDNEP1-210ENST00000574322 FCHSD2O94868 740 aa37.31■■■■□ 3.56
CTDNEP1-210ENST00000574322 RRP1P56182 461 aaKnown RBP37.31■■■■□ 3.56
CTDNEP1-210ENST00000574322 PPP4R2Q9NY27 417 aa37.31■■■■□ 3.56
CTDNEP1-210ENST00000574322 WDR63Q8IWG1 891 aa37.3■■■■□ 3.56
CTDNEP1-210ENST00000574322 IL13P35225 146 aa37.29■■■■□ 3.56
CTDNEP1-210ENST00000574322 PIK3C2AO00443 1686 aa37.28■■■■□ 3.56
CTDNEP1-210ENST00000574322 PPM1GO15355 546 aaPredicted RBP37.27■■■■□ 3.56
CTDNEP1-210ENST00000574322 SPINK5Q9NQ38 1064 aaPredicted RBP37.27■■■■□ 3.56
CTDNEP1-210ENST00000574322 ROBO1Q9Y6N7 1651 aa37.27■■■■□ 3.56
CTDNEP1-210ENST00000574322 FOXO3O43524 673 aa37.24■■■■□ 3.55
CTDNEP1-210ENST00000574322 RRS1Q15050 365 aaKnown RBP37.24■■■■□ 3.55
CTDNEP1-210ENST00000574322 PELP1Q8IZL8 1130 aaKnown RBP37.24■■■■□ 3.55
CTDNEP1-210ENST00000574322 RRP7AQ9Y3A4 280 aaKnown RBP37.23■■■■□ 3.55
CTDNEP1-210ENST00000574322 KIF1AQ12756 1690 aa37.23■■■■□ 3.55
CTDNEP1-210ENST00000574322 RSPH6AQ9H0K4 717 aa37.22■■■■□ 3.55
CTDNEP1-210ENST00000574322 MAPK8IP3Q9UPT6 1336 aa37.21■■■■□ 3.55
CTDNEP1-210ENST00000574322 TMPOP42166 694 aaKnown RBP37.2■■■■□ 3.55
CTDNEP1-210ENST00000574322 DDX17Q92841 729 aaKnown RBP37.2■■■■□ 3.55
CTDNEP1-210ENST00000574322 NEUROD2Q15784 382 aa37.19■■■■□ 3.54
CTDNEP1-210ENST00000574322 NPHP3Q7Z494 1330 aa37.19■■■■□ 3.54
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms