RNA–Protein interactions for RNA: ENST00000573328.5

NPLOC4-212, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 2

Gene NPLOC4, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-212ENST00000573328 CDK19Q9BWU1 502 aa13.88□□□□□ -0.19
NPLOC4-212ENST00000573328 CENPJQ9HC77 1338 aaPredicted RBP13.88□□□□□ -0.19
NPLOC4-212ENST00000573328 UNC5CLQ8IV45 518 aa13.87□□□□□ -0.19
NPLOC4-212ENST00000573328 RALGAPBQ86X10 1494 aa13.87□□□□□ -0.19
NPLOC4-212ENST00000573328 SRPK2P78362 688 aaKnown RBP13.86□□□□□ -0.19
NPLOC4-212ENST00000573328 GJD4Q96KN9 370 aaPredicted RBP13.86□□□□□ -0.19
NPLOC4-212ENST00000573328 CCDC9Q9Y3X0 531 aaKnown RBP13.86□□□□□ -0.19
NPLOC4-212ENST00000573328 ROCK2O75116 1388 aaKnown RBP13.84□□□□□ -0.19
NPLOC4-212ENST00000573328 EP400Q96L91 3159 aa13.84□□□□□ -0.19
NPLOC4-212ENST00000573328 PPIP5K1Q6PFW1 1433 aa13.83□□□□□ -0.2
NPLOC4-212ENST00000573328 CCDC61Q9Y6R9 512 aa13.83□□□□□ -0.2
NPLOC4-212ENST00000573328 ACEP12821 1306 aa13.82□□□□□ -0.2
NPLOC4-212ENST00000573328 POLR3AO14802 1390 aaPredicted RBP13.82□□□□□ -0.2
NPLOC4-212ENST00000573328 A0A0G2JS52 829 aa13.81□□□□□ -0.2
NPLOC4-212ENST00000573328 MYT1Q01538 1121 aa13.81□□□□□ -0.2
NPLOC4-212ENST00000573328 NUTM2GQ5VZR2 741 aa13.81□□□□□ -0.2
NPLOC4-212ENST00000573328 CABP2Q9NPB3 220 aa13.81□□□□□ -0.2
NPLOC4-212ENST00000573328 NRKQ7Z2Y5 1582 aa13.8□□□□□ -0.2
NPLOC4-212ENST00000573328 FAM83GA6ND36 823 aa13.8□□□□□ -0.2
NPLOC4-212ENST00000573328 VPS72Q15906 364 aa13.8□□□□□ -0.2
NPLOC4-212ENST00000573328 PRDM11Q9NQV5 511 aa13.8□□□□□ -0.2
NPLOC4-212ENST00000573328 BTG4Q9NY30 223 aa13.8□□□□□ -0.2
NPLOC4-212ENST00000573328 TONSLQ96HA7 1378 aa13.8□□□□□ -0.2
NPLOC4-212ENST00000573328 AKAP12Q02952 1782 aa13.79□□□□□ -0.2
NPLOC4-212ENST00000573328 NBPF8Q3BBV2 869 aa13.79□□□□□ -0.2
NPLOC4-212ENST00000573328 PLEKHG3A1L390 1219 aa13.78□□□□□ -0.2
NPLOC4-212ENST00000573328 TRIM26Q12899 539 aaPredicted RBP13.78□□□□□ -0.2
NPLOC4-212ENST00000573328 EVC2Q86UK5 1308 aa13.78□□□□□ -0.2
NPLOC4-212ENST00000573328 SEPT12Q8IYM1 358 aa13.77□□□□□ -0.21
NPLOC4-212ENST00000573328 ABTB2Q8N961 1025 aa13.77□□□□□ -0.21
NPLOC4-212ENST00000573328 KIAA0232Q92628 1395 aa13.77□□□□□ -0.21
NPLOC4-212ENST00000573328 ZC3H6P61129 1189 aaKnown RBP13.76□□□□□ -0.21
NPLOC4-212ENST00000573328 CHRNA2Q15822 529 aa13.75□□□□□ -0.21
NPLOC4-212ENST00000573328 FAM98CQ17RN3 349 aaKnown RBP13.75□□□□□ -0.21
NPLOC4-212ENST00000573328 PIK3C2AO00443 1686 aa13.75□□□□□ -0.21
NPLOC4-212ENST00000573328 USP6P35125 1406 aa13.74□□□□□ -0.21
NPLOC4-212ENST00000573328 CARD11Q9BXL7 1154 aa13.74□□□□□ -0.21
NPLOC4-212ENST00000573328 STRN4Q9NRL3 753 aa13.74□□□□□ -0.21
NPLOC4-212ENST00000573328 CABP1Q9NZU7 370 aa13.74□□□□□ -0.21
NPLOC4-212ENST00000573328 MON2Q7Z3U7 1717 aa13.73□□□□□ -0.21
NPLOC4-212ENST00000573328 THSD7AQ9UPZ6 1657 aa13.73□□□□□ -0.21
NPLOC4-212ENST00000573328 KRT27Q7Z3Y8 459 aa13.73□□□□□ -0.21
NPLOC4-212ENST00000573328 NLRP13Q86W25 1043 aa13.73□□□□□ -0.21
NPLOC4-212ENST00000573328 RGPD1P0DJD0 1748 aa13.73□□□□□ -0.21
NPLOC4-212ENST00000573328 LMO7Q8WWI1 1683 aa13.72□□□□□ -0.21
NPLOC4-212ENST00000573328 BRD4O60885 1362 aaPredicted RBP13.72□□□□□ -0.21
NPLOC4-212ENST00000573328 ZBTB7CA1YPR0 619 aa13.72□□□□□ -0.21
NPLOC4-212ENST00000573328 SF3B2Q13435 895 aaKnown RBP13.72□□□□□ -0.21
NPLOC4-212ENST00000573328 CCDC125Q86Z20 511 aa13.72□□□□□ -0.21
NPLOC4-212ENST00000573328 BLMP54132 1417 aaPredicted RBP13.72□□□□□ -0.21
NPLOC4-212ENST00000573328 USP19O94966 1318 aa13.71□□□□□ -0.21
NPLOC4-212ENST00000573328 SPATA31A5Q5VU36 1347 aa13.71□□□□□ -0.21
NPLOC4-212ENST00000573328 SPATA31A7Q8IWB4 1347 aa13.71□□□□□ -0.21
NPLOC4-212ENST00000573328 EVA1CP58658 441 aa13.7□□□□□ -0.22
NPLOC4-212ENST00000573328 RGPD5Q99666 1765 aa13.7□□□□□ -0.22
NPLOC4-212ENST00000573328 ONECUT3O60422 494 aaPredicted RBP13.69□□□□□ -0.22
NPLOC4-212ENST00000573328 NLRP6P59044 892 aa13.69□□□□□ -0.22
NPLOC4-212ENST00000573328 USP35Q9P2H5 1018 aa13.69□□□□□ -0.22
NPLOC4-212ENST00000573328 SSH2Q76I76 1423 aa13.69□□□□□ -0.22
NPLOC4-212ENST00000573328 CPDO75976 1380 aa13.69□□□□□ -0.22
NPLOC4-212ENST00000573328 SBNO2Q9Y2G9 1366 aa13.69□□□□□ -0.22
NPLOC4-212ENST00000573328 SLIT3O75094 1523 aa13.69□□□□□ -0.22
NPLOC4-212ENST00000573328 CAMTA1Q9Y6Y1 1673 aa13.69□□□□□ -0.22
NPLOC4-212ENST00000573328 GCP02774 474 aa13.68□□□□□ -0.22
NPLOC4-212ENST00000573328 WNK3Q9BYP7 1800 aa13.68□□□□□ -0.22
NPLOC4-212ENST00000573328 TNS1Q9HBL0 1735 aaKnown RBP13.67□□□□□ -0.22
NPLOC4-212ENST00000573328 SPATA31A1Q5TZJ5 1347 aa13.67□□□□□ -0.22
NPLOC4-212ENST00000573328 KTN1Q86UP2 1357 aaKnown RBP13.67□□□□□ -0.22
NPLOC4-212ENST00000573328 LTN1O94822 1766 aa13.66□□□□□ -0.22
NPLOC4-212ENST00000573328 ZNF692Q9BU19 519 aaPredicted RBP13.66□□□□□ -0.22
NPLOC4-212ENST00000573328 ZRANB1Q9UGI0 708 aa13.66□□□□□ -0.22
NPLOC4-212ENST00000573328 COL5A2P05997 1499 aaPredicted RBP13.66□□□□□ -0.22
NPLOC4-212ENST00000573328 PARP4Q9UKK3 1724 aaKnown RBP13.65□□□□□ -0.22
NPLOC4-212ENST00000573328 SOX12O15370 315 aa13.65□□□□□ -0.22
NPLOC4-212ENST00000573328 FAM182BQ5T319 152 aa13.65□□□□□ -0.22
NPLOC4-212ENST00000573328 DEFB132Q7Z7B7 95 aa13.65□□□□□ -0.22
NPLOC4-212ENST00000573328 TMC1Q8TDI8 760 aa13.65□□□□□ -0.22
NPLOC4-212ENST00000573328 COL18A1P39060 1754 aa13.65□□□□□ -0.22
NPLOC4-212ENST00000573328 TTC21BQ7Z4L5 1316 aa13.64□□□□□ -0.23
NPLOC4-212ENST00000573328 TTC21AQ8NDW8 1320 aa13.64□□□□□ -0.23
NPLOC4-212ENST00000573328 USP54Q70EL1 1684 aa13.64□□□□□ -0.23
NPLOC4-212ENST00000573328 LARP1Q6PKG0 1096 aaKnown RBP13.64□□□□□ -0.23
NPLOC4-212ENST00000573328 CPSF1Q10570 1443 aaKnown RBP13.64□□□□□ -0.23
NPLOC4-212ENST00000573328 BAG6P46379 1132 aa13.63□□□□□ -0.23
NPLOC4-212ENST00000573328 HDGFL2Q7Z4V5 671 aaPredicted RBP13.62□□□□□ -0.23
NPLOC4-212ENST00000573328 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.62□□□□□ -0.23
NPLOC4-212ENST00000573328 TCP11L2Q8N4U5 519 aa13.62□□□□□ -0.23
NPLOC4-212ENST00000573328 CRB1P82279 1406 aa13.62□□□□□ -0.23
NPLOC4-212ENST00000573328 LRRC37A3O60309 1634 aa13.61□□□□□ -0.23
NPLOC4-212ENST00000573328 AATKQ6ZMQ8 1374 aa13.61□□□□□ -0.23
NPLOC4-212ENST00000573328 NFAT5O94916 1531 aa13.61□□□□□ -0.23
NPLOC4-212ENST00000573328 PDE3BQ13370 1112 aa13.61□□□□□ -0.23
NPLOC4-212ENST00000573328 KCNH5Q8NCM2 988 aa13.61□□□□□ -0.23
NPLOC4-212ENST00000573328 BARGINQ6ZT62 677 aa13.6□□□□□ -0.23
NPLOC4-212ENST00000573328 CD163L1Q9NR16 1453 aa13.6□□□□□ -0.23
NPLOC4-212ENST00000573328 ST20-MTHFSA0A0A6YYL1 179 aa13.59□□□□□ -0.23
NPLOC4-212ENST00000573328 TOM1L2Q6ZVM7 507 aa13.59□□□□□ -0.23
NPLOC4-212ENST00000573328 PCGF6Q9BYE7 350 aa13.59□□□□□ -0.23
NPLOC4-212ENST00000573328 TERF2IPQ9NYB0 399 aa13.59□□□□□ -0.23
NPLOC4-212ENST00000573328 THRAP3Q9Y2W1 955 aaKnown RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms