RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 FMN2Q9NZ56 1722 aa29.01■■■□□ 2.23
VPS53-210ENST00000571456 EN1Q05925 392 aaPredicted RBP29.01■■■□□ 2.23
VPS53-210ENST00000571456 A0A0G2JS52 829 aa29■■■□□ 2.23
VPS53-210ENST00000571456 MYT1Q01538 1121 aa29■■■□□ 2.23
VPS53-210ENST00000571456 SAFB2Q14151 953 aaKnown RBP eCLIP29■■■□□ 2.23
VPS53-210ENST00000571456 YY1P25490 414 aa28.99■■■□□ 2.23
VPS53-210ENST00000571456 ZEB1P37275 1124 aaPredicted RBP28.99■■■□□ 2.23
VPS53-210ENST00000571456 KRT28Q7Z3Y7 464 aa28.99■■■□□ 2.23
VPS53-210ENST00000571456 USP47Q96K76 1375 aa28.97■■■□□ 2.23
VPS53-210ENST00000571456 MINK1Q8N4C8 1332 aaPredicted RBP28.96■■■□□ 2.23
VPS53-210ENST00000571456 ANKARQ7Z5J8 1434 aa28.96■■■□□ 2.23
VPS53-210ENST00000571456 CABLES1Q8TDN4 633 aa28.96■■■□□ 2.23
VPS53-210ENST00000571456 WASLO00401 505 aaPredicted RBP28.95■■■□□ 2.22
VPS53-210ENST00000571456 TNS3Q68CZ2 1445 aa28.94■■■□□ 2.22
VPS53-210ENST00000571456 ABCA3Q99758 1704 aa28.94■■■□□ 2.22
VPS53-210ENST00000571456 FAM98CQ17RN3 349 aaKnown RBP28.92■■■□□ 2.22
VPS53-210ENST00000571456 TULP4Q9NRJ4 1543 aa28.92■■■□□ 2.22
VPS53-210ENST00000571456 EVC2Q86UK5 1308 aa28.92■■■□□ 2.22
VPS53-210ENST00000571456 PLEKHG5O94827 1062 aa28.91■■■□□ 2.22
VPS53-210ENST00000571456 DISP2A7MBM2 1401 aa28.91■■■□□ 2.22
VPS53-210ENST00000571456 PSME1Q06323 249 aa28.9■■■□□ 2.22
VPS53-210ENST00000571456 HIRIP3Q9BW71 556 aaPredicted RBP28.9■■■□□ 2.22
VPS53-210ENST00000571456 TNS1Q9HBL0 1735 aaKnown RBP28.89■■■□□ 2.22
VPS53-210ENST00000571456 RGPD8O14715 1765 aaPredicted RBP28.89■■■□□ 2.22
VPS53-210ENST00000571456 FAM83GA6ND36 823 aa28.89■■■□□ 2.22
VPS53-210ENST00000571456 EIF4G2P78344 907 aaKnown RBP eCLIP28.89■■■□□ 2.22
VPS53-210ENST00000571456 ITSN1Q15811 1721 aa28.89■■■□□ 2.21
VPS53-210ENST00000571456 NRAPQ86VF7 1730 aa28.89■■■□□ 2.21
VPS53-210ENST00000571456 ST20-MTHFSA0A0A6YYL1 179 aa28.88■■■□□ 2.21
VPS53-210ENST00000571456 FAM182BQ5T319 152 aa28.86■■■□□ 2.21
VPS53-210ENST00000571456 PUS7Q96PZ0 661 aaKnown RBP28.86■■■□□ 2.21
VPS53-210ENST00000571456 CDK19Q9BWU1 502 aa28.86■■■□□ 2.21
VPS53-210ENST00000571456 LMOD2Q6P5Q4 547 aa28.85■■■□□ 2.21
VPS53-210ENST00000571456 SBNO1A3KN83 1393 aa28.85■■■□□ 2.21
VPS53-210ENST00000571456 ARHGEF10O15013 1369 aa28.85■■■□□ 2.21
VPS53-210ENST00000571456 EZH2Q15910 746 aaKnown RBP28.84■■■□□ 2.21
VPS53-210ENST00000571456 PHF8Q9UPP1 1060 aa28.84■■■□□ 2.21
VPS53-210ENST00000571456 TESK2Q96S53 571 aa28.83■■■□□ 2.21
VPS53-210ENST00000571456 ATP7BP35670 1465 aa28.81■■■□□ 2.2
VPS53-210ENST00000571456 SRPK2P78362 688 aaKnown RBP28.81■■■□□ 2.2
VPS53-210ENST00000571456 BTG4Q9NY30 223 aa28.81■■■□□ 2.2
VPS53-210ENST00000571456 CDCA8Q53HL2 280 aa28.8■■■□□ 2.2
VPS53-210ENST00000571456 TMF1P82094 1093 aa28.79■■■□□ 2.2
VPS53-210ENST00000571456 NUDT16Q96DE0 195 aaKnown RBP28.79■■■□□ 2.2
VPS53-210ENST00000571456 CAMKK2Q96RR4 588 aa28.79■■■□□ 2.2
VPS53-210ENST00000571456 CCDC61Q9Y6R9 512 aa28.79■■■□□ 2.2
VPS53-210ENST00000571456 TOPAZ1Q8N9V7 1692 aa28.78■■■□□ 2.2
VPS53-210ENST00000571456 COL14A1Q05707 1796 aaKnown RBP28.77■■■□□ 2.2
VPS53-210ENST00000571456 THSD7AQ9UPZ6 1657 aa28.77■■■□□ 2.2
VPS53-210ENST00000571456 SPATA31A5Q5VU36 1347 aa28.75■■■□□ 2.19
VPS53-210ENST00000571456 SPATA31A7Q8IWB4 1347 aa28.75■■■□□ 2.19
VPS53-210ENST00000571456 PRR36Q9H6K5 1346 aa28.75■■■□□ 2.19
VPS53-210ENST00000571456 HSPA5P11021 654 aaKnown RBP28.74■■■□□ 2.19
VPS53-210ENST00000571456 PARD3Q8TEW0 1356 aa28.74■■■□□ 2.19
VPS53-210ENST00000571456 DCAF8L1A6NGE4 600 aa28.72■■■□□ 2.19
VPS53-210ENST00000571456 TRIM37O94972 964 aa28.72■■■□□ 2.19
VPS53-210ENST00000571456 CABP2Q9NPB3 220 aa28.72■■■□□ 2.19
VPS53-210ENST00000571456 NINLQ9Y2I6 1382 aa28.72■■■□□ 2.19
VPS53-210ENST00000571456 PLEKHG3A1L390 1219 aa28.71■■■□□ 2.19
VPS53-210ENST00000571456 APBA3O96018 575 aa28.69■■■□□ 2.18
VPS53-210ENST00000571456 FAM196AQ6ZSG2 479 aa28.69■■■□□ 2.18
VPS53-210ENST00000571456 RREB1Q92766 1687 aa28.69■■■□□ 2.18
VPS53-210ENST00000571456 PPIP5K1Q6PFW1 1433 aa28.69■■■□□ 2.18
VPS53-210ENST00000571456 PPP1R1BQ9UD71 204 aaPredicted RBP28.68■■■□□ 2.18
VPS53-210ENST00000571456 POLR3AO14802 1390 aaPredicted RBP28.67■■■□□ 2.18
VPS53-210ENST00000571456 NUP188Q5SRE5 1749 aa28.66■■■□□ 2.18
VPS53-210ENST00000571456 TRPM3Q9HCF6 1732 aaPredicted RBP28.66■■■□□ 2.18
VPS53-210ENST00000571456 BRD4O60885 1362 aaPredicted RBP28.65■■■□□ 2.18
VPS53-210ENST00000571456 NBPF14Q5TI25 921 aa28.65■■■□□ 2.18
VPS53-210ENST00000571456 NGDNQ8NEJ9 315 aaKnown RBP28.65■■■□□ 2.18
VPS53-210ENST00000571456 ALS2Q96Q42 1657 aa28.64■■■□□ 2.17
VPS53-210ENST00000571456 PMFBP1Q8TBY8 1022 aa28.63■■■□□ 2.17
VPS53-210ENST00000571456 SPON1Q9HCB6 807 aa28.63■■■□□ 2.17
VPS53-210ENST00000571456 ZNF692Q9BU19 519 aaPredicted RBP28.61■■■□□ 2.17
VPS53-210ENST00000571456 CABP1Q9NZU7 370 aa28.61■■■□□ 2.17
VPS53-210ENST00000571456 ACEP12821 1306 aa28.6■■■□□ 2.17
VPS53-210ENST00000571456 SPATA31A1Q5TZJ5 1347 aa28.6■■■□□ 2.17
VPS53-210ENST00000571456 AKAP12Q02952 1782 aa28.58■■■□□ 2.17
VPS53-210ENST00000571456 KCNQ2O43526 872 aa28.58■■■□□ 2.17
VPS53-210ENST00000571456 CRYBG1Q9Y4K1 1723 aa28.57■■■□□ 2.16
VPS53-210ENST00000571456 PRDM11Q9NQV5 511 aa28.57■■■□□ 2.16
VPS53-210ENST00000571456 TERF2IPQ9NYB0 399 aa28.56■■■□□ 2.16
VPS53-210ENST00000571456 CAMTA1Q9Y6Y1 1673 aa28.56■■■□□ 2.16
VPS53-210ENST00000571456 CPSF1Q10570 1443 aaKnown RBP28.54■■■□□ 2.16
VPS53-210ENST00000571456 TMC1Q8TDI8 760 aa28.54■■■□□ 2.16
VPS53-210ENST00000571456 HDGFL2Q7Z4V5 671 aaPredicted RBP28.53■■■□□ 2.16
VPS53-210ENST00000571456 MON2Q7Z3U7 1717 aa28.52■■■□□ 2.16
VPS53-210ENST00000571456 USP6P35125 1406 aa28.52■■■□□ 2.16
VPS53-210ENST00000571456 UTRNP46939 3433 aa28.51■■■□□ 2.15
VPS53-210ENST00000571456 PDE3BQ13370 1112 aa28.5■■■□□ 2.15
VPS53-210ENST00000571456 ZNF784Q8NCA9 323 aaPredicted RBP28.5■■■□□ 2.15
VPS53-210ENST00000571456 SLC12A5Q9H2X9 1139 aa28.49■■■□□ 2.15
VPS53-210ENST00000571456 STRN4Q9NRL3 753 aa28.49■■■□□ 2.15
VPS53-210ENST00000571456 ANKRD36BQ8N2N9 1353 aa28.49■■■□□ 2.15
VPS53-210ENST00000571456 MYOM1P52179 1685 aa28.48■■■□□ 2.15
VPS53-210ENST00000571456 KTN1Q86UP2 1357 aaKnown RBP28.48■■■□□ 2.15
VPS53-210ENST00000571456 CD163L1Q9NR16 1453 aa28.47■■■□□ 2.15
VPS53-210ENST00000571456 KIAA0232Q92628 1395 aa28.47■■■□□ 2.15
VPS53-210ENST00000571456 TTC21AQ8NDW8 1320 aa28.45■■■□□ 2.15
VPS53-210ENST00000571456 SENP3-EIF4A1A0A087X0R7 540 aa28.45■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms