RNA–Protein interactions for RNA: ENST00000569569.5

HERPUD1-218, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 1,125 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-218ENST00000569569 CABLES1Q8TDN4 633 aa19.5■□□□□ 0.71
HERPUD1-218ENST00000569569 ATAD2Q6PL18 1390 aa19.49■□□□□ 0.71
HERPUD1-218ENST00000569569 ST20-MTHFSA0A0A6YYL1 179 aa19.49■□□□□ 0.71
HERPUD1-218ENST00000569569 SOCS7O14512 581 aa19.49■□□□□ 0.71
HERPUD1-218ENST00000569569 SLC24A1O60721 1099 aa19.49■□□□□ 0.71
HERPUD1-218ENST00000569569 FNBP4Q8N3X1 1017 aaPredicted RBP19.49■□□□□ 0.71
HERPUD1-218ENST00000569569 PLEKHG5O94827 1062 aa19.48■□□□□ 0.71
HERPUD1-218ENST00000569569 QTRT2Q9H974 415 aaKnown RBP19.47■□□□□ 0.71
HERPUD1-218ENST00000569569 USP21Q9UK80 565 aa19.47■□□□□ 0.71
HERPUD1-218ENST00000569569 AKAP12Q02952 1782 aa19.47■□□□□ 0.71
HERPUD1-218ENST00000569569 BRD4O60885 1362 aaPredicted RBP19.46■□□□□ 0.71
HERPUD1-218ENST00000569569 USP47Q96K76 1375 aa19.45■□□□□ 0.7
HERPUD1-218ENST00000569569 CRYBG1Q9Y4K1 1723 aa19.45■□□□□ 0.7
HERPUD1-218ENST00000569569 RXRBP28702 533 aa19.45■□□□□ 0.7
HERPUD1-218ENST00000569569 PUS7Q96PZ0 661 aaKnown RBP19.45■□□□□ 0.7
HERPUD1-218ENST00000569569 TESK2Q96S53 571 aa19.45■□□□□ 0.7
HERPUD1-218ENST00000569569 ZNF692Q9BU19 519 aaPredicted RBP19.45■□□□□ 0.7
HERPUD1-218ENST00000569569 ABTB2Q8N961 1025 aa19.44■□□□□ 0.7
HERPUD1-218ENST00000569569 USP6P35125 1406 aa19.43■□□□□ 0.7
HERPUD1-218ENST00000569569 TRPC5Q9UL62 973 aaPredicted RBP19.42■□□□□ 0.7
HERPUD1-218ENST00000569569 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.42■□□□□ 0.7
HERPUD1-218ENST00000569569 BCL9LQ86UU0 1499 aa19.41■□□□□ 0.7
HERPUD1-218ENST00000569569 RBM6P78332 1123 aaKnown RBP19.41■□□□□ 0.7
HERPUD1-218ENST00000569569 NUTM2GQ5VZR2 741 aa19.41■□□□□ 0.7
HERPUD1-218ENST00000569569 NWD2Q9ULI1 1742 aa19.41■□□□□ 0.7
HERPUD1-218ENST00000569569 SLIT2O94813 1529 aa19.41■□□□□ 0.7
HERPUD1-218ENST00000569569 PHRF1Q9P1Y6 1649 aaKnown RBP19.4■□□□□ 0.7
HERPUD1-218ENST00000569569 TMC1Q8TDI8 760 aa19.4■□□□□ 0.7
HERPUD1-218ENST00000569569 PLCH1Q4KWH8 1693 aa19.4■□□□□ 0.7
HERPUD1-218ENST00000569569 FAM83GA6ND36 823 aa19.39■□□□□ 0.69
HERPUD1-218ENST00000569569 TMF1P82094 1093 aa19.39■□□□□ 0.69
HERPUD1-218ENST00000569569 NLRP13Q86W25 1043 aa19.39■□□□□ 0.69
HERPUD1-218ENST00000569569 UNC5CLQ8IV45 518 aa19.39■□□□□ 0.69
HERPUD1-218ENST00000569569 CPSF1Q10570 1443 aaKnown RBP19.39■□□□□ 0.69
HERPUD1-218ENST00000569569 SSH2Q76I76 1423 aa19.39■□□□□ 0.69
HERPUD1-218ENST00000569569 MON2Q7Z3U7 1717 aa19.39■□□□□ 0.69
HERPUD1-218ENST00000569569 ATRNO75882 1429 aa19.38■□□□□ 0.69
HERPUD1-218ENST00000569569 COL14A1Q05707 1796 aaKnown RBP19.38■□□□□ 0.69
HERPUD1-218ENST00000569569 CDK12Q9NYV4 1490 aaPredicted RBP19.37■□□□□ 0.69
HERPUD1-218ENST00000569569 KTN1Q86UP2 1357 aaKnown RBP19.37■□□□□ 0.69
HERPUD1-218ENST00000569569 SLC12A5Q9H2X9 1139 aa19.37■□□□□ 0.69
HERPUD1-218ENST00000569569 TTC21BQ7Z4L5 1316 aa19.36■□□□□ 0.69
HERPUD1-218ENST00000569569 TTC21AQ8NDW8 1320 aa19.35■□□□□ 0.69
HERPUD1-218ENST00000569569 NLRP6P59044 892 aa19.35■□□□□ 0.69
HERPUD1-218ENST00000569569 HDGFL2Q7Z4V5 671 aaPredicted RBP19.35■□□□□ 0.69
HERPUD1-218ENST00000569569 PIK3C2AO00443 1686 aa19.35■□□□□ 0.69
HERPUD1-218ENST00000569569 NINLQ9Y2I6 1382 aa19.34■□□□□ 0.69
HERPUD1-218ENST00000569569 USP19O94966 1318 aa19.34■□□□□ 0.69
HERPUD1-218ENST00000569569 CDCA8Q53HL2 280 aa19.34■□□□□ 0.69
HERPUD1-218ENST00000569569 PRDM11Q9NQV5 511 aa19.34■□□□□ 0.69
HERPUD1-218ENST00000569569 TERF2IPQ9NYB0 399 aa19.34■□□□□ 0.69
HERPUD1-218ENST00000569569 NRKQ7Z2Y5 1582 aa19.34■□□□□ 0.69
HERPUD1-218ENST00000569569 CD163L1Q9NR16 1453 aa19.34■□□□□ 0.69
HERPUD1-218ENST00000569569 ZC3H6P61129 1189 aaKnown RBP19.33■□□□□ 0.68
HERPUD1-218ENST00000569569 GJD4Q96KN9 370 aaPredicted RBP19.33■□□□□ 0.68
HERPUD1-218ENST00000569569 BTG4Q9NY30 223 aa19.33■□□□□ 0.68
HERPUD1-218ENST00000569569 KIAA0232Q92628 1395 aa19.32■□□□□ 0.68
HERPUD1-218ENST00000569569 NRAPQ86VF7 1730 aa19.32■□□□□ 0.68
HERPUD1-218ENST00000569569 GCP02774 474 aa19.32■□□□□ 0.68
HERPUD1-218ENST00000569569 EIF4G2P78344 907 aaKnown RBP eCLIP19.31■□□□□ 0.68
HERPUD1-218ENST00000569569 VPS72Q15906 364 aa19.31■□□□□ 0.68
HERPUD1-218ENST00000569569 RGS12O14924 1447 aa19.29■□□□□ 0.68
HERPUD1-218ENST00000569569 CHRNA2Q15822 529 aa19.29■□□□□ 0.68
HERPUD1-218ENST00000569569 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.29■□□□□ 0.68
HERPUD1-218ENST00000569569 SLIT3O75094 1523 aa19.29■□□□□ 0.68
HERPUD1-218ENST00000569569 A0A1W2PP64 1363 aa19.29■□□□□ 0.68
HERPUD1-218ENST00000569569 CPDO75976 1380 aa19.29■□□□□ 0.68
HERPUD1-218ENST00000569569 EDC4Q6P2E9 1401 aaKnown RBP19.28■□□□□ 0.68
HERPUD1-218ENST00000569569 GLI3P10071 1580 aa19.27■□□□□ 0.68
HERPUD1-218ENST00000569569 CCDC9Q9Y3X0 531 aaKnown RBP19.27■□□□□ 0.68
HERPUD1-218ENST00000569569 HSPA5P11021 654 aaKnown RBP19.26■□□□□ 0.67
HERPUD1-218ENST00000569569 KCNH5Q8NCM2 988 aa19.26■□□□□ 0.67
HERPUD1-218ENST00000569569 USP54Q70EL1 1684 aa19.26■□□□□ 0.67
HERPUD1-218ENST00000569569 USP31Q70CQ4 1352 aa19.25■□□□□ 0.67
HERPUD1-218ENST00000569569 ANKRD36BQ8N2N9 1353 aa19.25■□□□□ 0.67
HERPUD1-218ENST00000569569 LMO7Q8WWI1 1683 aa19.24■□□□□ 0.67
HERPUD1-218ENST00000569569 NME9Q86XW9 330 aa19.24■□□□□ 0.67
HERPUD1-218ENST00000569569 EVA1CP58658 441 aa19.23■□□□□ 0.67
HERPUD1-218ENST00000569569 CAMTA1Q9Y6Y1 1673 aa19.23■□□□□ 0.67
HERPUD1-218ENST00000569569 MYOM1P52179 1685 aa19.22■□□□□ 0.67
HERPUD1-218ENST00000569569 ONECUT3O60422 494 aaPredicted RBP19.22■□□□□ 0.67
HERPUD1-218ENST00000569569 STRN4Q9NRL3 753 aa19.22■□□□□ 0.67
HERPUD1-218ENST00000569569 ZRANB1Q9UGI0 708 aa19.22■□□□□ 0.67
HERPUD1-218ENST00000569569 BRWD3Q6RI45 1802 aa19.22■□□□□ 0.67
HERPUD1-218ENST00000569569 COL18A1P39060 1754 aa19.21■□□□□ 0.67
HERPUD1-218ENST00000569569 ZBTB7CA1YPR0 619 aa19.21■□□□□ 0.67
HERPUD1-218ENST00000569569 RGPD5Q99666 1765 aa19.21■□□□□ 0.67
HERPUD1-218ENST00000569569 SPATA31A5Q5VU36 1347 aa19.21■□□□□ 0.67
HERPUD1-218ENST00000569569 SPATA31A7Q8IWB4 1347 aa19.21■□□□□ 0.67
HERPUD1-218ENST00000569569 AATKQ6ZMQ8 1374 aa19.2■□□□□ 0.66
HERPUD1-218ENST00000569569 SOX12O15370 315 aa19.2■□□□□ 0.66
HERPUD1-218ENST00000569569 ADRA2BP18089 450 aa19.2■□□□□ 0.66
HERPUD1-218ENST00000569569 ARHGEF25Q86VW2 580 aa19.2■□□□□ 0.66
HERPUD1-218ENST00000569569 SEPT12Q8IYM1 358 aa19.19■□□□□ 0.66
HERPUD1-218ENST00000569569 NFAT5O94916 1531 aa19.19■□□□□ 0.66
HERPUD1-218ENST00000569569 LTN1O94822 1766 aa19.19■□□□□ 0.66
HERPUD1-218ENST00000569569 FAM98CQ17RN3 349 aaKnown RBP19.17■□□□□ 0.66
HERPUD1-218ENST00000569569 UPF1Q92900 1129 aaKnown RBP eCLIP19.17■□□□□ 0.66
HERPUD1-218ENST00000569569 POLR3GLQ9BT43 218 aa19.17■□□□□ 0.66
HERPUD1-218ENST00000569569 SPATA31A1Q5TZJ5 1347 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms