RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PLEKHG1Q9ULL1 1385 aa26.4■■□□□ 1.82
CLN3-230ENST00000568076 EDC4Q6P2E9 1401 aaKnown RBP26.4■■□□□ 1.82
CLN3-230ENST00000568076 FBLN1P23142 703 aa26.38■■□□□ 1.81
CLN3-230ENST00000568076 C3P01024 1663 aa26.38■■□□□ 1.81
CLN3-230ENST00000568076 KDM2BQ8NHM5 1336 aa26.38■■□□□ 1.81
CLN3-230ENST00000568076 CDC42BPGQ6DT37 1551 aa26.38■■□□□ 1.81
CLN3-230ENST00000568076 TCERG1O14776 1098 aaKnown RBP26.37■■□□□ 1.81
CLN3-230ENST00000568076 DIAPH1O60610 1272 aaKnown RBP26.37■■□□□ 1.81
CLN3-230ENST00000568076 POLKQ9UBT6 870 aa26.37■■□□□ 1.81
CLN3-230ENST00000568076 CCDC61Q9Y6R9 512 aa26.36■■□□□ 1.81
CLN3-230ENST00000568076 PRR36Q9H6K5 1346 aa26.35■■□□□ 1.81
CLN3-230ENST00000568076 TMPOP42166 694 aaKnown RBP26.34■■□□□ 1.81
CLN3-230ENST00000568076 NME9Q86XW9 330 aa26.34■■□□□ 1.81
CLN3-230ENST00000568076 RARSP54136 660 aaKnown RBP26.33■■□□□ 1.81
CLN3-230ENST00000568076 MON2Q7Z3U7 1717 aa26.33■■□□□ 1.81
CLN3-230ENST00000568076 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.33■■□□□ 1.81
CLN3-230ENST00000568076 SKAP1Q86WV1 359 aa26.33■■□□□ 1.8
CLN3-230ENST00000568076 ZRANB1Q9UGI0 708 aa26.33■■□□□ 1.8
CLN3-230ENST00000568076 TRIM35Q9UPQ4 493 aa26.32■■□□□ 1.8
CLN3-230ENST00000568076 PTPRUQ92729 1446 aa26.31■■□□□ 1.8
CLN3-230ENST00000568076 ANP32EQ9BTT0 268 aa26.31■■□□□ 1.8
CLN3-230ENST00000568076 MYH16Q9H6N6 1097 aa26.31■■□□□ 1.8
CLN3-230ENST00000568076 SLIT1O75093 1534 aa26.31■■□□□ 1.8
CLN3-230ENST00000568076 FER1L4A9Z1Z3 1794 aa26.31■■□□□ 1.8
CLN3-230ENST00000568076 ARHGAP23Q9P227 1491 aa26.31■■□□□ 1.8
CLN3-230ENST00000568076 MAPK8IP3Q9UPT6 1336 aa26.3■■□□□ 1.8
CLN3-230ENST00000568076 PDE3AQ14432 1141 aa26.3■■□□□ 1.8
CLN3-230ENST00000568076 SLC26A8Q96RN1 970 aa26.3■■□□□ 1.8
CLN3-230ENST00000568076 AKAP12Q02952 1782 aa26.3■■□□□ 1.8
CLN3-230ENST00000568076 MAP2P11137 1827 aaKnown RBP26.29■■□□□ 1.8
CLN3-230ENST00000568076 PPM1GO15355 546 aaPredicted RBP26.29■■□□□ 1.8
CLN3-230ENST00000568076 PLPPR3Q6T4P5 718 aa26.29■■□□□ 1.8
CLN3-230ENST00000568076 CENPQQ7L2Z9 268 aaPredicted RBP26.29■■□□□ 1.8
CLN3-230ENST00000568076 MS4A1P11836 297 aa26.28■■□□□ 1.8
CLN3-230ENST00000568076 EID1Q9Y6B2 187 aa26.27■■□□□ 1.8
CLN3-230ENST00000568076 EMILIN1Q9Y6C2 1016 aa26.27■■□□□ 1.8
CLN3-230ENST00000568076 LRRC7Q96NW7 1537 aa26.27■■□□□ 1.8
CLN3-230ENST00000568076 ITSN1Q15811 1721 aa26.26■■□□□ 1.79
CLN3-230ENST00000568076 AATKQ6ZMQ8 1374 aa26.26■■□□□ 1.79
CLN3-230ENST00000568076 FCHSD2O94868 740 aa26.26■■□□□ 1.79
CLN3-230ENST00000568076 PANK1Q8TE04 598 aa26.26■■□□□ 1.79
CLN3-230ENST00000568076 FRAT1Q92837 279 aaPredicted RBP26.25■■□□□ 1.79
CLN3-230ENST00000568076 TSR2Q969E8 191 aaKnown RBP26.25■■□□□ 1.79
CLN3-230ENST00000568076 CANXP27824 592 aaKnown RBP26.24■■□□□ 1.79
CLN3-230ENST00000568076 RSPH6AQ9H0K4 717 aa26.24■■□□□ 1.79
CLN3-230ENST00000568076 PDE4AP27815 886 aa26.24■■□□□ 1.79
CLN3-230ENST00000568076 RIPK4P57078 832 aa26.24■■□□□ 1.79
CLN3-230ENST00000568076 ZNF692Q9BU19 519 aaPredicted RBP26.24■■□□□ 1.79
CLN3-230ENST00000568076 PNNQ9H307 717 aaKnown RBP26.24■■□□□ 1.79
CLN3-230ENST00000568076 TOPAZ1Q8N9V7 1692 aa26.23■■□□□ 1.79
CLN3-230ENST00000568076 COG3Q96JB2 828 aa26.23■■□□□ 1.79
CLN3-230ENST00000568076 BCL2L13Q9BXK5 485 aa26.23■■□□□ 1.79
CLN3-230ENST00000568076 COG6Q9Y2V7 657 aa26.22■■□□□ 1.79
CLN3-230ENST00000568076 CDK12Q9NYV4 1490 aaPredicted RBP26.22■■□□□ 1.79
CLN3-230ENST00000568076 TRHP20396 242 aaPredicted RBP26.22■■□□□ 1.79
CLN3-230ENST00000568076 PRKAR2BP31323 418 aa26.21■■□□□ 1.79
CLN3-230ENST00000568076 BACH2Q9BYV9 841 aa26.21■■□□□ 1.79
CLN3-230ENST00000568076 IL13P35225 146 aa26.2■■□□□ 1.79
CLN3-230ENST00000568076 TNNQ9UQP3 1299 aa26.2■■□□□ 1.79
CLN3-230ENST00000568076 TBX22Q9Y458 520 aa26.2■■□□□ 1.79
CLN3-230ENST00000568076 IL16Q14005 1332 aa26.2■■□□□ 1.79
CLN3-230ENST00000568076 AMOTL2Q9Y2J4 779 aa26.2■■□□□ 1.78
CLN3-230ENST00000568076 NRKQ7Z2Y5 1582 aa26.19■■□□□ 1.78
CLN3-230ENST00000568076 NUTM2FA1L443 756 aa26.18■■□□□ 1.78
CLN3-230ENST00000568076 RRS1Q15050 365 aaKnown RBP26.18■■□□□ 1.78
CLN3-230ENST00000568076 PLEKHG3A1L390 1219 aa26.18■■□□□ 1.78
CLN3-230ENST00000568076 RLBP1P12271 317 aa26.18■■□□□ 1.78
CLN3-230ENST00000568076 EXOSC9Q06265 439 aaKnown RBP26.18■■□□□ 1.78
CLN3-230ENST00000568076 THEMISQ8N1K5 641 aaPredicted RBP26.18■■□□□ 1.78
CLN3-230ENST00000568076 ACEP12821 1306 aa26.18■■□□□ 1.78
CLN3-230ENST00000568076 HMOX1P09601 288 aa26.17■■□□□ 1.78
CLN3-230ENST00000568076 CT47B1P0C2W7 299 aaPredicted RBP26.16■■□□□ 1.78
CLN3-230ENST00000568076 PTCH1Q13635 1447 aa26.16■■□□□ 1.78
CLN3-230ENST00000568076 TTC21BQ7Z4L5 1316 aa26.16■■□□□ 1.78
CLN3-230ENST00000568076 CLUAP1Q96AJ1 413 aa26.16■■□□□ 1.78
CLN3-230ENST00000568076 PHACTR3Q96KR7 559 aa26.16■■□□□ 1.78
CLN3-230ENST00000568076 IGHDP01880 384 aa26.15■■□□□ 1.78
CLN3-230ENST00000568076 USP6P35125 1406 aa26.13■■□□□ 1.77
CLN3-230ENST00000568076 DIP2AQ14689 1571 aa26.13■■□□□ 1.77
CLN3-230ENST00000568076 ANP32AP39687 249 aaKnown RBP26.12■■□□□ 1.77
CLN3-230ENST00000568076 OVOS2A0A0J9YW53 1432 aa26.11■■□□□ 1.77
CLN3-230ENST00000568076 OVOS2Q6IE36 1432 aa26.11■■□□□ 1.77
CLN3-230ENST00000568076 NFE2L2Q16236 605 aa26.11■■□□□ 1.77
CLN3-230ENST00000568076 SSH2Q76I76 1423 aa26.09■■□□□ 1.77
CLN3-230ENST00000568076 NEFMP07197 916 aa26.09■■□□□ 1.77
CLN3-230ENST00000568076 XRN1Q8IZH2 1706 aaKnown RBP26.08■■□□□ 1.77
CLN3-230ENST00000568076 SSH1Q8WYL5 1049 aa26.08■■□□□ 1.77
CLN3-230ENST00000568076 ZKSCAN2Q63HK3 967 aa26.07■■□□□ 1.76
CLN3-230ENST00000568076 IPO9Q96P70 1041 aaKnown RBP26.07■■□□□ 1.76
CLN3-230ENST00000568076 SMC4Q9NTJ3 1288 aa26.07■■□□□ 1.76
CLN3-230ENST00000568076 CEP170BQ9Y4F5 1589 aaPredicted RBP26.07■■□□□ 1.76
CLN3-230ENST00000568076 AAMPQ13685 434 aa26.06■■□□□ 1.76
CLN3-230ENST00000568076 ERICH6Q7L0X2 663 aa26.05■■□□□ 1.76
CLN3-230ENST00000568076 NALCNQ8IZF0 1738 aa26.05■■□□□ 1.76
CLN3-230ENST00000568076 PMFBP1Q8TBY8 1022 aa26.04■■□□□ 1.76
CLN3-230ENST00000568076 THUMPD2Q9BTF0 503 aaKnown RBP26.04■■□□□ 1.76
CLN3-230ENST00000568076 PCDHB15Q9Y5E8 787 aa26.04■■□□□ 1.76
CLN3-230ENST00000568076 MVPQ14764 893 aaKnown RBP26.04■■□□□ 1.76
CLN3-230ENST00000568076 NOP58Q9Y2X3 529 aaKnown RBP26.04■■□□□ 1.76
CLN3-230ENST00000568076 USP31Q70CQ4 1352 aa26.03■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 153.8 ms