RNA–Protein interactions for RNA: ENST00000565379.1

NME3-208, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 911 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-208ENST00000565379 EIF4G2P78344 907 aaKnown RBP eCLIP36.44■■■■□ 3.42
NME3-208ENST00000565379 NGDNQ8NEJ9 315 aaKnown RBP36.44■■■■□ 3.42
NME3-208ENST00000565379 SBNO2Q9Y2G9 1366 aa36.43■■■■□ 3.42
NME3-208ENST00000565379 HAP1P54257 671 aaPredicted RBP36.43■■■■□ 3.42
NME3-208ENST00000565379 ITSN1Q15811 1721 aa36.41■■■■□ 3.42
NME3-208ENST00000565379 TOPAZ1Q8N9V7 1692 aa36.41■■■■□ 3.42
NME3-208ENST00000565379 ST20-MTHFSA0A0A6YYL1 179 aa36.39■■■■□ 3.42
NME3-208ENST00000565379 TNKS1BP1Q9C0C2 1729 aaKnown RBP36.37■■■■□ 3.41
NME3-208ENST00000565379 GJD4Q96KN9 370 aaPredicted RBP36.37■■■■□ 3.41
NME3-208ENST00000565379 QRICH2Q9H0J4 1663 aa36.37■■■■□ 3.41
NME3-208ENST00000565379 UNC5CLQ8IV45 518 aa36.36■■■■□ 3.41
NME3-208ENST00000565379 PLCH1Q4KWH8 1693 aa36.35■■■■□ 3.41
NME3-208ENST00000565379 PAK3O75914 559 aaPredicted RBP36.35■■■■□ 3.41
NME3-208ENST00000565379 GLI3P10071 1580 aa36.33■■■■□ 3.41
NME3-208ENST00000565379 CABP2Q9NPB3 220 aa36.33■■■■□ 3.41
NME3-208ENST00000565379 FAM83GA6ND36 823 aa36.32■■■■□ 3.4
NME3-208ENST00000565379 ACEP12821 1306 aa36.32■■■■□ 3.4
NME3-208ENST00000565379 EVC2Q86UK5 1308 aa36.32■■■■□ 3.4
NME3-208ENST00000565379 CRYBG1Q9Y4K1 1723 aa36.31■■■■□ 3.4
NME3-208ENST00000565379 HSPA5P11021 654 aaKnown RBP36.3■■■■□ 3.4
NME3-208ENST00000565379 CCDC61Q9Y6R9 512 aa36.3■■■■□ 3.4
NME3-208ENST00000565379 POLR3AO14802 1390 aaPredicted RBP36.29■■■■□ 3.4
NME3-208ENST00000565379 SRPK2P78362 688 aaKnown RBP36.29■■■■□ 3.4
NME3-208ENST00000565379 TESK2Q96S53 571 aa36.29■■■■□ 3.4
NME3-208ENST00000565379 NUTM2GQ5VZR2 741 aa36.27■■■■□ 3.4
NME3-208ENST00000565379 PLEKHG3A1L390 1219 aa36.26■■■■□ 3.4
NME3-208ENST00000565379 CCDC125Q86Z20 511 aa36.26■■■■□ 3.4
NME3-208ENST00000565379 EP400Q96L91 3159 aa36.25■■■■□ 3.39
NME3-208ENST00000565379 TMF1P82094 1093 aa36.24■■■■□ 3.39
NME3-208ENST00000565379 NWD2Q9ULI1 1742 aa36.24■■■■□ 3.39
NME3-208ENST00000565379 PPIP5K1Q6PFW1 1433 aa36.24■■■■□ 3.39
NME3-208ENST00000565379 PUS7Q96PZ0 661 aaKnown RBP36.23■■■■□ 3.39
NME3-208ENST00000565379 CDCA8Q53HL2 280 aa36.21■■■■□ 3.39
NME3-208ENST00000565379 NRAPQ86VF7 1730 aa36.21■■■■□ 3.39
NME3-208ENST00000565379 VPS72Q15906 364 aa36.2■■■■□ 3.39
NME3-208ENST00000565379 BTG4Q9NY30 223 aa36.18■■■■□ 3.38
NME3-208ENST00000565379 PHRF1Q9P1Y6 1649 aaKnown RBP36.18■■■■□ 3.38
NME3-208ENST00000565379 CCDC9Q9Y3X0 531 aaKnown RBP36.17■■■■□ 3.38
NME3-208ENST00000565379 COL14A1Q05707 1796 aaKnown RBP36.17■■■■□ 3.38
NME3-208ENST00000565379 CABP1Q9NZU7 370 aa36.15■■■■□ 3.38
NME3-208ENST00000565379 KIAA0232Q92628 1395 aa36.14■■■■□ 3.38
NME3-208ENST00000565379 BRWD3Q6RI45 1802 aa36.13■■■■□ 3.37
NME3-208ENST00000565379 CHRNA2Q15822 529 aa36.12■■■■□ 3.37
NME3-208ENST00000565379 ZRANB1Q9UGI0 708 aa36.12■■■■□ 3.37
NME3-208ENST00000565379 PRDM11Q9NQV5 511 aa36.11■■■■□ 3.37
NME3-208ENST00000565379 SEPT12Q8IYM1 358 aa36.1■■■■□ 3.37
NME3-208ENST00000565379 ZC3H6P61129 1189 aaKnown RBP36.09■■■■□ 3.37
NME3-208ENST00000565379 ONECUT3O60422 494 aaPredicted RBP36.08■■■■□ 3.37
NME3-208ENST00000565379 ABTB2Q8N961 1025 aa36.08■■■■□ 3.37
NME3-208ENST00000565379 NRKQ7Z2Y5 1582 aa36.07■■■■□ 3.37
NME3-208ENST00000565379 USP6P35125 1406 aa36.06■■■■□ 3.36
NME3-208ENST00000565379 USP19O94966 1318 aa36.05■■■■□ 3.36
NME3-208ENST00000565379 NINLQ9Y2I6 1382 aa36.02■■■■□ 3.36
NME3-208ENST00000565379 BLMP54132 1417 aaPredicted RBP36.02■■■■□ 3.36
NME3-208ENST00000565379 FAM98CQ17RN3 349 aaKnown RBP36.02■■■■□ 3.36
NME3-208ENST00000565379 SSH2Q76I76 1423 aa36■■■■□ 3.35
NME3-208ENST00000565379 SPATA31A5Q5VU36 1347 aa35.99■■■■□ 3.35
NME3-208ENST00000565379 SPATA31A7Q8IWB4 1347 aa35.99■■■■□ 3.35
NME3-208ENST00000565379 A0A0G2JS52 829 aa35.97■■■■□ 3.35
NME3-208ENST00000565379 MYT1Q01538 1121 aa35.97■■■■□ 3.35
NME3-208ENST00000565379 STRN4Q9NRL3 753 aa35.97■■■■□ 3.35
NME3-208ENST00000565379 KRT27Q7Z3Y8 459 aa35.96■■■■□ 3.35
NME3-208ENST00000565379 PIK3C2AO00443 1686 aa35.95■■■■□ 3.35
NME3-208ENST00000565379 SF3B2Q13435 895 aaKnown RBP35.95■■■■□ 3.35
NME3-208ENST00000565379 NLRP13Q86W25 1043 aa35.94■■■■□ 3.34
NME3-208ENST00000565379 CAMTA1Q9Y6Y1 1673 aa35.93■■■■□ 3.34
NME3-208ENST00000565379 AKAP12Q02952 1782 aa35.92■■■■□ 3.34
NME3-208ENST00000565379 GCP02774 474 aa35.92■■■■□ 3.34
NME3-208ENST00000565379 BRD4O60885 1362 aaPredicted RBP35.91■■■■□ 3.34
NME3-208ENST00000565379 CPDO75976 1380 aa35.91■■■■□ 3.34
NME3-208ENST00000565379 LMO7Q8WWI1 1683 aa35.91■■■■□ 3.34
NME3-208ENST00000565379 NLRP6P59044 892 aa35.91■■■■□ 3.34
NME3-208ENST00000565379 TMC1Q8TDI8 760 aa35.91■■■■□ 3.34
NME3-208ENST00000565379 SPATA31A1Q5TZJ5 1347 aa35.89■■■■□ 3.34
NME3-208ENST00000565379 C11orf95C9JLR9 678 aaPredicted RBP35.89■■■■□ 3.34
NME3-208ENST00000565379 ZNF692Q9BU19 519 aaPredicted RBP35.89■■■■□ 3.34
NME3-208ENST00000565379 SRCAPQ6ZRS2 3230 aa35.89■■■■□ 3.34
NME3-208ENST00000565379 SLIT3O75094 1523 aa35.88■■■■□ 3.33
NME3-208ENST00000565379 KIF7Q2M1P5 1343 aa35.88■■■■□ 3.33
NME3-208ENST00000565379 TTC21BQ7Z4L5 1316 aa35.88■■■■□ 3.33
NME3-208ENST00000565379 THSD7AQ9UPZ6 1657 aa35.88■■■■□ 3.33
NME3-208ENST00000565379 DEFB132Q7Z7B7 95 aa35.88■■■■□ 3.33
NME3-208ENST00000565379 CPSF1Q10570 1443 aaKnown RBP35.88■■■■□ 3.33
NME3-208ENST00000565379 ZBTB7CA1YPR0 619 aa35.87■■■■□ 3.33
NME3-208ENST00000565379 FAM182BQ5T319 152 aa35.87■■■■□ 3.33
NME3-208ENST00000565379 TERF2IPQ9NYB0 399 aa35.86■■■■□ 3.33
NME3-208ENST00000565379 LARP1Q6PKG0 1096 aaKnown RBP35.85■■■■□ 3.33
NME3-208ENST00000565379 SLC12A5Q9H2X9 1139 aa35.85■■■■□ 3.33
NME3-208ENST00000565379 HDGFL2Q7Z4V5 671 aaPredicted RBP35.84■■■■□ 3.33
NME3-208ENST00000565379 POLR3GLQ9BT43 218 aa35.84■■■■□ 3.33
NME3-208ENST00000565379 USP35Q9P2H5 1018 aa35.84■■■■□ 3.33
NME3-208ENST00000565379 CCDC7Q96M83 1385 aa35.84■■■■□ 3.33
NME3-208ENST00000565379 CD163L1Q9NR16 1453 aa35.83■■■■□ 3.33
NME3-208ENST00000565379 KTN1Q86UP2 1357 aaKnown RBP35.82■■■■□ 3.32
NME3-208ENST00000565379 EVA1CP58658 441 aa35.81■■■■□ 3.32
NME3-208ENST00000565379 MON2Q7Z3U7 1717 aa35.8■■■■□ 3.32
NME3-208ENST00000565379 WASHC2AQ641Q2 1341 aa35.8■■■■□ 3.32
NME3-208ENST00000565379 ANKRD36BQ8N2N9 1353 aa35.78■■■■□ 3.32
NME3-208ENST00000565379 SOX12O15370 315 aa35.78■■■■□ 3.32
NME3-208ENST00000565379 COL5A2P05997 1499 aaPredicted RBP35.78■■■■□ 3.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms