RNA–Protein interactions for RNA: ENST00000563239.1

UBR1-204, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-204ENST00000563239 USP6P35125 1406 aa12.03□□□□□ -0.48
UBR1-204ENST00000563239 PAK3O75914 559 aaPredicted RBP12.02□□□□□ -0.49
UBR1-204ENST00000563239 MEX3CQ5U5Q3 659 aaKnown RBP12.02□□□□□ -0.49
UBR1-204ENST00000563239 LMOD2Q6P5Q4 547 aa12.02□□□□□ -0.49
UBR1-204ENST00000563239 SLC12A5Q9H2X9 1139 aa12.02□□□□□ -0.49
UBR1-204ENST00000563239 ABCA3Q99758 1704 aa12.02□□□□□ -0.49
UBR1-204ENST00000563239 AKAP12Q02952 1782 aa12.02□□□□□ -0.49
UBR1-204ENST00000563239 HSPA5P11021 654 aaKnown RBP12.01□□□□□ -0.49
UBR1-204ENST00000563239 C8orf37Q96NL8 207 aa12.01□□□□□ -0.49
UBR1-204ENST00000563239 SLC24A1O60721 1099 aa12□□□□□ -0.49
UBR1-204ENST00000563239 PLEKHG5O94827 1062 aa12□□□□□ -0.49
UBR1-204ENST00000563239 TMF1P82094 1093 aa12□□□□□ -0.49
UBR1-204ENST00000563239 ZNF692Q9BU19 519 aaPredicted RBP12□□□□□ -0.49
UBR1-204ENST00000563239 AFF2P51816 1311 aa12□□□□□ -0.49
UBR1-204ENST00000563239 BRD4O60885 1362 aaPredicted RBP12□□□□□ -0.49
UBR1-204ENST00000563239 MARF1Q9Y4F3 1742 aaKnown RBP12□□□□□ -0.49
UBR1-204ENST00000563239 EIF4G2P78344 907 aaKnown RBP eCLIP11.99□□□□□ -0.49
UBR1-204ENST00000563239 NUTM2GQ5VZR2 741 aa11.99□□□□□ -0.49
UBR1-204ENST00000563239 FNBP4Q8N3X1 1017 aaPredicted RBP11.99□□□□□ -0.49
UBR1-204ENST00000563239 TMC1Q8TDI8 760 aa11.99□□□□□ -0.49
UBR1-204ENST00000563239 TTC21BQ7Z4L5 1316 aa11.99□□□□□ -0.49
UBR1-204ENST00000563239 NRKQ7Z2Y5 1582 aa11.99□□□□□ -0.49
UBR1-204ENST00000563239 MON2Q7Z3U7 1717 aa11.98□□□□□ -0.49
UBR1-204ENST00000563239 A0A1W2PP64 1363 aa11.98□□□□□ -0.49
UBR1-204ENST00000563239 KTN1Q86UP2 1357 aaKnown RBP11.98□□□□□ -0.49
UBR1-204ENST00000563239 USP19O94966 1318 aa11.98□□□□□ -0.49
UBR1-204ENST00000563239 ABTB2Q8N961 1025 aa11.98□□□□□ -0.49
UBR1-204ENST00000563239 NGLY1Q96IV0 654 aa11.98□□□□□ -0.49
UBR1-204ENST00000563239 PIK3C2AO00443 1686 aa11.97□□□□□ -0.49
UBR1-204ENST00000563239 BCL9LQ86UU0 1499 aa11.97□□□□□ -0.49
UBR1-204ENST00000563239 FAM83GA6ND36 823 aa11.97□□□□□ -0.49
UBR1-204ENST00000563239 ZNF772Q68DY9 489 aaPredicted RBP11.97□□□□□ -0.49
UBR1-204ENST00000563239 SRCAPQ6ZRS2 3230 aa11.97□□□□□ -0.49
UBR1-204ENST00000563239 PHRF1Q9P1Y6 1649 aaKnown RBP11.97□□□□□ -0.49
UBR1-204ENST00000563239 SLIT2O94813 1529 aa11.96□□□□□ -0.49
UBR1-204ENST00000563239 NINLQ9Y2I6 1382 aa11.96□□□□□ -0.49
UBR1-204ENST00000563239 C11orf95C9JLR9 678 aaPredicted RBP11.96□□□□□ -0.49
UBR1-204ENST00000563239 TTC21AQ8NDW8 1320 aa11.95□□□□□ -0.5
UBR1-204ENST00000563239 ZRANB1Q9UGI0 708 aa11.95□□□□□ -0.5
UBR1-204ENST00000563239 USP21Q9UK80 565 aa11.95□□□□□ -0.5
UBR1-204ENST00000563239 MYOM1P52179 1685 aa11.94□□□□□ -0.5
UBR1-204ENST00000563239 HAP1P54257 671 aaPredicted RBP11.94□□□□□ -0.5
UBR1-204ENST00000563239 NLRP6P59044 892 aa11.94□□□□□ -0.5
UBR1-204ENST00000563239 CDCA8Q53HL2 280 aa11.94□□□□□ -0.5
UBR1-204ENST00000563239 HDGFL2Q7Z4V5 671 aaPredicted RBP11.94□□□□□ -0.5
UBR1-204ENST00000563239 NLRP13Q86W25 1043 aa11.94□□□□□ -0.5
UBR1-204ENST00000563239 QTRT2Q9H974 415 aaKnown RBP11.94□□□□□ -0.5
UBR1-204ENST00000563239 TERF2IPQ9NYB0 399 aa11.94□□□□□ -0.5
UBR1-204ENST00000563239 SLIT3O75094 1523 aa11.94□□□□□ -0.5
UBR1-204ENST00000563239 ATRNO75882 1429 aa11.94□□□□□ -0.5
UBR1-204ENST00000563239 EDC4Q6P2E9 1401 aaKnown RBP11.94□□□□□ -0.5
UBR1-204ENST00000563239 ANKRD36BQ8N2N9 1353 aa11.93□□□□□ -0.5
UBR1-204ENST00000563239 KIAA0232Q92628 1395 aa11.93□□□□□ -0.5
UBR1-204ENST00000563239 GCP02774 474 aa11.93□□□□□ -0.5
UBR1-204ENST00000563239 NME9Q86XW9 330 aa11.93□□□□□ -0.5
UBR1-204ENST00000563239 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.93□□□□□ -0.5
UBR1-204ENST00000563239 PLCH1Q4KWH8 1693 aa11.93□□□□□ -0.5
UBR1-204ENST00000563239 USP31Q70CQ4 1352 aa11.92□□□□□ -0.5
UBR1-204ENST00000563239 ZC3H6P61129 1189 aaKnown RBP11.92□□□□□ -0.5
UBR1-204ENST00000563239 UNC5CLQ8IV45 518 aa11.92□□□□□ -0.5
UBR1-204ENST00000563239 CARD14Q9BXL6 1004 aa11.92□□□□□ -0.5
UBR1-204ENST00000563239 COL14A1Q05707 1796 aaKnown RBP11.92□□□□□ -0.5
UBR1-204ENST00000563239 CPDO75976 1380 aa11.92□□□□□ -0.5
UBR1-204ENST00000563239 USP54Q70EL1 1684 aa11.91□□□□□ -0.5
UBR1-204ENST00000563239 CHRNA2Q15822 529 aa11.91□□□□□ -0.5
UBR1-204ENST00000563239 NRAPQ86VF7 1730 aa11.91□□□□□ -0.5
UBR1-204ENST00000563239 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.91□□□□□ -0.5
UBR1-204ENST00000563239 NWD2Q9ULI1 1742 aa11.91□□□□□ -0.5
UBR1-204ENST00000563239 RXRBP28702 533 aa11.9□□□□□ -0.5
UBR1-204ENST00000563239 PRDM11Q9NQV5 511 aa11.9□□□□□ -0.5
UBR1-204ENST00000563239 BTG4Q9NY30 223 aa11.9□□□□□ -0.5
UBR1-204ENST00000563239 TRPC5Q9UL62 973 aaPredicted RBP11.9□□□□□ -0.5
UBR1-204ENST00000563239 NFAT5O94916 1531 aa11.9□□□□□ -0.5
UBR1-204ENST00000563239 OVOS2A0A0J9YW53 1432 aa11.89□□□□□ -0.51
UBR1-204ENST00000563239 OVOS2Q6IE36 1432 aa11.89□□□□□ -0.51
UBR1-204ENST00000563239 RBM6P78332 1123 aaKnown RBP11.89□□□□□ -0.51
UBR1-204ENST00000563239 LMO7Q8WWI1 1683 aa11.89□□□□□ -0.51
UBR1-204ENST00000563239 GLI3P10071 1580 aa11.88□□□□□ -0.51
UBR1-204ENST00000563239 CAMTA1Q9Y6Y1 1673 aa11.88□□□□□ -0.51
UBR1-204ENST00000563239 FYB1O15117 783 aa11.88□□□□□ -0.51
UBR1-204ENST00000563239 VPS72Q15906 364 aa11.88□□□□□ -0.51
UBR1-204ENST00000563239 ARHGEF25Q86VW2 580 aa11.88□□□□□ -0.51
UBR1-204ENST00000563239 GJD4Q96KN9 370 aaPredicted RBP11.88□□□□□ -0.51
UBR1-204ENST00000563239 CDK12Q9NYV4 1490 aaPredicted RBP11.88□□□□□ -0.51
UBR1-204ENST00000563239 KIF7Q2M1P5 1343 aa11.87□□□□□ -0.51
UBR1-204ENST00000563239 COL18A1P39060 1754 aa11.87□□□□□ -0.51
UBR1-204ENST00000563239 KCNA4P22459 653 aa11.87□□□□□ -0.51
UBR1-204ENST00000563239 AATKQ6ZMQ8 1374 aa11.87□□□□□ -0.51
UBR1-204ENST00000563239 RGS12O14924 1447 aa11.86□□□□□ -0.51
UBR1-204ENST00000563239 SOX12O15370 315 aa11.86□□□□□ -0.51
UBR1-204ENST00000563239 KCNH5Q8NCM2 988 aa11.86□□□□□ -0.51
UBR1-204ENST00000563239 POLR3GLQ9BT43 218 aa11.86□□□□□ -0.51
UBR1-204ENST00000563239 AXIN2Q9Y2T1 843 aa11.86□□□□□ -0.51
UBR1-204ENST00000563239 NSD3Q9BZ95 1437 aa11.86□□□□□ -0.51
UBR1-204ENST00000563239 PANK3Q9H999 370 aa11.85□□□□□ -0.51
UBR1-204ENST00000563239 ONECUT3O60422 494 aaPredicted RBP11.84□□□□□ -0.51
UBR1-204ENST00000563239 FBLN1P23142 703 aa11.84□□□□□ -0.51
UBR1-204ENST00000563239 GGNBP2Q9H3C7 697 aa11.84□□□□□ -0.51
UBR1-204ENST00000563239 SPATA31A5Q5VU36 1347 aa11.84□□□□□ -0.51
UBR1-204ENST00000563239 WASHC2AQ641Q2 1341 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms