RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 TTC21BQ7Z4L5 1316 aa22.77■■□□□ 1.24
VPS4A-202ENST00000562754 ANKRD26Q9UPS8 1709 aa22.77■■□□□ 1.23
VPS4A-202ENST00000562754 BRD4O60885 1362 aaPredicted RBP22.76■■□□□ 1.23
VPS4A-202ENST00000562754 PSME1Q06323 249 aa22.76■■□□□ 1.23
VPS4A-202ENST00000562754 AMER1Q5JTC6 1135 aaPredicted RBP22.76■■□□□ 1.23
VPS4A-202ENST00000562754 KRT28Q7Z3Y7 464 aa22.76■■□□□ 1.23
VPS4A-202ENST00000562754 KNSTRNQ9Y448 316 aa22.76■■□□□ 1.23
VPS4A-202ENST00000562754 MARF1Q9Y4F3 1742 aaKnown RBP22.75■■□□□ 1.23
VPS4A-202ENST00000562754 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.75■■□□□ 1.23
VPS4A-202ENST00000562754 USP54Q70EL1 1684 aa22.74■■□□□ 1.23
VPS4A-202ENST00000562754 PHLPP1O60346 1717 aa22.74■■□□□ 1.23
VPS4A-202ENST00000562754 SOS2Q07890 1332 aaPredicted RBP22.74■■□□□ 1.23
VPS4A-202ENST00000562754 SCAF1Q9H7N4 1312 aaKnown RBP22.74■■□□□ 1.23
VPS4A-202ENST00000562754 COL16A1Q07092 1604 aaPredicted RBP22.73■■□□□ 1.23
VPS4A-202ENST00000562754 CGNL1Q0VF96 1302 aa22.73■■□□□ 1.23
VPS4A-202ENST00000562754 TTC21AQ8NDW8 1320 aa22.73■■□□□ 1.23
VPS4A-202ENST00000562754 SBNO1A3KN83 1393 aa22.73■■□□□ 1.23
VPS4A-202ENST00000562754 NPC1L1Q9UHC9 1359 aa22.73■■□□□ 1.23
VPS4A-202ENST00000562754 NME9Q86XW9 330 aa22.72■■□□□ 1.23
VPS4A-202ENST00000562754 TNS3Q68CZ2 1445 aa22.72■■□□□ 1.23
VPS4A-202ENST00000562754 DIEXFQ68CQ4 756 aaKnown RBP22.71■■□□□ 1.23
VPS4A-202ENST00000562754 FYB1O15117 783 aa22.7■■□□□ 1.22
VPS4A-202ENST00000562754 NSD2O96028 1365 aa22.7■■□□□ 1.22
VPS4A-202ENST00000562754 OVOS2A0A0J9YW53 1432 aa22.7■■□□□ 1.22
VPS4A-202ENST00000562754 OVOS2Q6IE36 1432 aa22.7■■□□□ 1.22
VPS4A-202ENST00000562754 PAK3O75914 559 aaPredicted RBP22.69■■□□□ 1.22
VPS4A-202ENST00000562754 ZRANB1Q9UGI0 708 aa22.69■■□□□ 1.22
VPS4A-202ENST00000562754 SPATA31A3Q5VYP0 1347 aa22.68■■□□□ 1.22
VPS4A-202ENST00000562754 CC2D1BQ5T0F9 858 aaKnown RBP22.68■■□□□ 1.22
VPS4A-202ENST00000562754 GGNBP2Q9H3C7 697 aa22.68■■□□□ 1.22
VPS4A-202ENST00000562754 USP31Q70CQ4 1352 aa22.67■■□□□ 1.22
VPS4A-202ENST00000562754 CRYBG1Q9Y4K1 1723 aa22.67■■□□□ 1.22
VPS4A-202ENST00000562754 CNGB1Q14028 1251 aaPredicted RBP22.66■■□□□ 1.22
VPS4A-202ENST00000562754 MED1Q15648 1581 aaPredicted RBP22.66■■□□□ 1.22
VPS4A-202ENST00000562754 PARD3Q8TEW0 1356 aa22.64■■□□□ 1.22
VPS4A-202ENST00000562754 ABTB2Q8N961 1025 aa22.64■■□□□ 1.21
VPS4A-202ENST00000562754 ABCA3Q99758 1704 aa22.63■■□□□ 1.21
VPS4A-202ENST00000562754 NUTM2GQ5VZR2 741 aa22.63■■□□□ 1.21
VPS4A-202ENST00000562754 PHRF1Q9P1Y6 1649 aaKnown RBP22.63■■□□□ 1.21
VPS4A-202ENST00000562754 ARHGEF10O15013 1369 aa22.63■■□□□ 1.21
VPS4A-202ENST00000562754 SLIT3O75094 1523 aa22.62■■□□□ 1.21
VPS4A-202ENST00000562754 COL22A1Q8NFW1 1626 aaPredicted RBP22.61■■□□□ 1.21
VPS4A-202ENST00000562754 NLRP6P59044 892 aa22.61■■□□□ 1.21
VPS4A-202ENST00000562754 LMOD2Q6P5Q4 547 aa22.61■■□□□ 1.21
VPS4A-202ENST00000562754 PRKRIP1Q9H875 184 aaPredicted RBP22.61■■□□□ 1.21
VPS4A-202ENST00000562754 USP19O94966 1318 aa22.6■■□□□ 1.21
VPS4A-202ENST00000562754 COG3Q96JB2 828 aa22.6■■□□□ 1.21
VPS4A-202ENST00000562754 MORC1Q86VD1 984 aa22.59■■□□□ 1.21
VPS4A-202ENST00000562754 PNPLA6Q8IY17 1366 aa22.59■■□□□ 1.21
VPS4A-202ENST00000562754 NFAT5O94916 1531 aa22.58■■□□□ 1.21
VPS4A-202ENST00000562754 LRRC59Q96AG4 307 aaKnown RBP22.58■■□□□ 1.21
VPS4A-202ENST00000562754 SHPRHQ149N8 1683 aa22.58■■□□□ 1.2
VPS4A-202ENST00000562754 ANP32CO43423 234 aa22.57■■□□□ 1.2
VPS4A-202ENST00000562754 NLRP13Q86W25 1043 aa22.57■■□□□ 1.2
VPS4A-202ENST00000562754 RALBP1Q15311 655 aa22.56■■□□□ 1.2
VPS4A-202ENST00000562754 HSPA1LP34931 641 aa22.55■■□□□ 1.2
VPS4A-202ENST00000562754 TNNT2P45379 298 aaPredicted RBP22.54■■□□□ 1.2
VPS4A-202ENST00000562754 MAP2P11137 1827 aaKnown RBP22.53■■□□□ 1.2
VPS4A-202ENST00000562754 PLEKHG5O94827 1062 aa22.53■■□□□ 1.2
VPS4A-202ENST00000562754 FBLN1P23142 703 aa22.53■■□□□ 1.2
VPS4A-202ENST00000562754 AATKQ6ZMQ8 1374 aa22.52■■□□□ 1.2
VPS4A-202ENST00000562754 CABLES1Q8TDN4 633 aa22.52■■□□□ 1.2
VPS4A-202ENST00000562754 LTN1O94822 1766 aa22.52■■□□□ 1.2
VPS4A-202ENST00000562754 SOX12O15370 315 aa22.51■■□□□ 1.19
VPS4A-202ENST00000562754 PPP2R1AP30153 589 aa22.51■■□□□ 1.19
VPS4A-202ENST00000562754 MYBBP1AQ9BQG0 1328 aaKnown RBP22.51■■□□□ 1.19
VPS4A-202ENST00000562754 PEAK1Q9H792 1746 aa22.51■■□□□ 1.19
VPS4A-202ENST00000562754 SMG6Q86US8 1419 aaKnown RBP22.5■■□□□ 1.19
VPS4A-202ENST00000562754 MIER1Q8N108 512 aa22.5■■□□□ 1.19
VPS4A-202ENST00000562754 FBXO41Q8TF61 875 aa22.5■■□□□ 1.19
VPS4A-202ENST00000562754 JCADQ9P266 1359 aa22.5■■□□□ 1.19
VPS4A-202ENST00000562754 GCP02774 474 aa22.48■■□□□ 1.19
VPS4A-202ENST00000562754 KCNH5Q8NCM2 988 aa22.47■■□□□ 1.19
VPS4A-202ENST00000562754 RRS1Q15050 365 aaKnown RBP22.46■■□□□ 1.19
VPS4A-202ENST00000562754 POLKQ9UBT6 870 aa22.45■■□□□ 1.18
VPS4A-202ENST00000562754 EMILIN1Q9Y6C2 1016 aa22.45■■□□□ 1.18
VPS4A-202ENST00000562754 MAP3K19Q56UN5 1328 aa22.45■■□□□ 1.18
VPS4A-202ENST00000562754 CDK12Q9NYV4 1490 aaPredicted RBP22.44■■□□□ 1.18
VPS4A-202ENST00000562754 COL18A1P39060 1754 aa22.43■■□□□ 1.18
VPS4A-202ENST00000562754 CPDO75976 1380 aa22.43■■□□□ 1.18
VPS4A-202ENST00000562754 COL3A1P02461 1466 aaPredicted RBP22.42■■□□□ 1.18
VPS4A-202ENST00000562754 MTHFSP49914 203 aa22.42■■□□□ 1.18
VPS4A-202ENST00000562754 ARHGEF25Q86VW2 580 aa22.42■■□□□ 1.18
VPS4A-202ENST00000562754 KIAA0232Q92628 1395 aa22.41■■□□□ 1.18
VPS4A-202ENST00000562754 ZC3H6P61129 1189 aaKnown RBP22.41■■□□□ 1.18
VPS4A-202ENST00000562754 CCDC184Q52MB2 194 aa22.41■■□□□ 1.18
VPS4A-202ENST00000562754 RTL1A6NKG5 1358 aa22.4■■□□□ 1.18
VPS4A-202ENST00000562754 LMO7Q8WWI1 1683 aa22.4■■□□□ 1.18
VPS4A-202ENST00000562754 LRP6O75581 1613 aa22.4■■□□□ 1.18
VPS4A-202ENST00000562754 HAP1P54257 671 aaPredicted RBP22.4■■□□□ 1.18
VPS4A-202ENST00000562754 ABCC6O95255 1503 aa22.4■■□□□ 1.18
VPS4A-202ENST00000562754 RGPD5Q99666 1765 aa22.39■■□□□ 1.17
VPS4A-202ENST00000562754 FLT4P35916 1363 aa22.38■■□□□ 1.17
VPS4A-202ENST00000562754 KIF24Q5T7B8 1368 aa22.38■■□□□ 1.17
VPS4A-202ENST00000562754 SPATA31A6Q5VVP1 1343 aa22.37■■□□□ 1.17
VPS4A-202ENST00000562754 ZBTB7CA1YPR0 619 aa22.37■■□□□ 1.17
VPS4A-202ENST00000562754 PPM1GO15355 546 aaPredicted RBP22.37■■□□□ 1.17
VPS4A-202ENST00000562754 COL14A1Q05707 1796 aaKnown RBP22.37■■□□□ 1.17
VPS4A-202ENST00000562754 INSRP06213 1382 aa22.37■■□□□ 1.17
VPS4A-202ENST00000562754 NUTM2BA6NNL0 878 aaPredicted RBP22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms