RNA–Protein interactions for RNA: ENST00000560620.1

CTDSPL2-209, Transcript of CTD small phosphatase like 2, humanhuman

TSL 3

Gene CTDSPL2, Length 863 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-209ENST00000560620 NUTM2GQ5VZR2 741 aa18.31■□□□□ 0.52
CTDSPL2-209ENST00000560620 FNBP4Q8N3X1 1017 aaPredicted RBP18.31■□□□□ 0.52
CTDSPL2-209ENST00000560620 TRPC5Q9UL62 973 aaPredicted RBP18.31■□□□□ 0.52
CTDSPL2-209ENST00000560620 TIMELESSQ9UNS1 1208 aa18.31■□□□□ 0.52
CTDSPL2-209ENST00000560620 RBM6P78332 1123 aaKnown RBP18.29■□□□□ 0.52
CTDSPL2-209ENST00000560620 ABTB2Q8N961 1025 aa18.29■□□□□ 0.52
CTDSPL2-209ENST00000560620 ABCA3Q99758 1704 aa18.29■□□□□ 0.52
CTDSPL2-209ENST00000560620 ATAD2Q6PL18 1390 aa18.28■□□□□ 0.52
CTDSPL2-209ENST00000560620 SBNO2Q9Y2G9 1366 aa18.28■□□□□ 0.52
CTDSPL2-209ENST00000560620 ST20-MTHFSA0A0A6YYL1 179 aa18.27■□□□□ 0.52
CTDSPL2-209ENST00000560620 TMC1Q8TDI8 760 aa18.26■□□□□ 0.51
CTDSPL2-209ENST00000560620 CCDC9Q9Y3X0 531 aaKnown RBP18.26■□□□□ 0.51
CTDSPL2-209ENST00000560620 UNC5CLQ8IV45 518 aa18.25■□□□□ 0.51
CTDSPL2-209ENST00000560620 BCL9LQ86UU0 1499 aa18.25■□□□□ 0.51
CTDSPL2-209ENST00000560620 FAM83GA6ND36 823 aa18.24■□□□□ 0.51
CTDSPL2-209ENST00000560620 PRDM11Q9NQV5 511 aa18.24■□□□□ 0.51
CTDSPL2-209ENST00000560620 USP6P35125 1406 aa18.23■□□□□ 0.51
CTDSPL2-209ENST00000560620 PLCH1Q4KWH8 1693 aa18.23■□□□□ 0.51
CTDSPL2-209ENST00000560620 USP47Q96K76 1375 aa18.23■□□□□ 0.51
CTDSPL2-209ENST00000560620 NLRP13Q86W25 1043 aa18.23■□□□□ 0.51
CTDSPL2-209ENST00000560620 ZNF692Q9BU19 519 aaPredicted RBP18.23■□□□□ 0.51
CTDSPL2-209ENST00000560620 SLIT2O94813 1529 aa18.23■□□□□ 0.51
CTDSPL2-209ENST00000560620 ATRNO75882 1429 aa18.23■□□□□ 0.51
CTDSPL2-209ENST00000560620 SLC24A1O60721 1099 aa18.22■□□□□ 0.51
CTDSPL2-209ENST00000560620 ZC3H6P61129 1189 aaKnown RBP18.22■□□□□ 0.51
CTDSPL2-209ENST00000560620 GJD4Q96KN9 370 aaPredicted RBP18.22■□□□□ 0.51
CTDSPL2-209ENST00000560620 CDK12Q9NYV4 1490 aaPredicted RBP18.21■□□□□ 0.51
CTDSPL2-209ENST00000560620 BRD4O60885 1362 aaPredicted RBP18.21■□□□□ 0.51
CTDSPL2-209ENST00000560620 KTN1Q86UP2 1357 aaKnown RBP18.21■□□□□ 0.51
CTDSPL2-209ENST00000560620 NLRP6P59044 892 aa18.21■□□□□ 0.51
CTDSPL2-209ENST00000560620 BTG4Q9NY30 223 aa18.21■□□□□ 0.51
CTDSPL2-209ENST00000560620 PHRF1Q9P1Y6 1649 aaKnown RBP18.2■□□□□ 0.5
CTDSPL2-209ENST00000560620 RGS12O14924 1447 aa18.2■□□□□ 0.5
CTDSPL2-209ENST00000560620 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.2■□□□□ 0.5
CTDSPL2-209ENST00000560620 CRYBG1Q9Y4K1 1723 aa18.2■□□□□ 0.5
CTDSPL2-209ENST00000560620 KIAA0232Q92628 1395 aa18.19■□□□□ 0.5
CTDSPL2-209ENST00000560620 ZBTB7CA1YPR0 619 aa18.19■□□□□ 0.5
CTDSPL2-209ENST00000560620 CHRNA2Q15822 529 aa18.19■□□□□ 0.5
CTDSPL2-209ENST00000560620 HDGFL2Q7Z4V5 671 aaPredicted RBP18.19■□□□□ 0.5
CTDSPL2-209ENST00000560620 TESK2Q96S53 571 aa18.19■□□□□ 0.5
CTDSPL2-209ENST00000560620 NWD2Q9ULI1 1742 aa18.19■□□□□ 0.5
CTDSPL2-209ENST00000560620 COL14A1Q05707 1796 aaKnown RBP18.19■□□□□ 0.5
CTDSPL2-209ENST00000560620 TMF1P82094 1093 aa18.18■□□□□ 0.5
CTDSPL2-209ENST00000560620 SLC12A5Q9H2X9 1139 aa18.18■□□□□ 0.5
CTDSPL2-209ENST00000560620 AKAP12Q02952 1782 aa18.17■□□□□ 0.5
CTDSPL2-209ENST00000560620 A0A0G2JS52 829 aa18.17■□□□□ 0.5
CTDSPL2-209ENST00000560620 MYT1Q01538 1121 aa18.17■□□□□ 0.5
CTDSPL2-209ENST00000560620 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.17■□□□□ 0.5
CTDSPL2-209ENST00000560620 TERF2IPQ9NYB0 399 aa18.17■□□□□ 0.5
CTDSPL2-209ENST00000560620 TTC21BQ7Z4L5 1316 aa18.17■□□□□ 0.5
CTDSPL2-209ENST00000560620 GCP02774 474 aa18.16■□□□□ 0.5
CTDSPL2-209ENST00000560620 VPS72Q15906 364 aa18.16■□□□□ 0.5
CTDSPL2-209ENST00000560620 STRN4Q9NRL3 753 aa18.16■□□□□ 0.5
CTDSPL2-209ENST00000560620 SOX12O15370 315 aa18.15■□□□□ 0.5
CTDSPL2-209ENST00000560620 PUS7Q96PZ0 661 aaKnown RBP18.15■□□□□ 0.5
CTDSPL2-209ENST00000560620 USP19O94966 1318 aa18.15■□□□□ 0.5
CTDSPL2-209ENST00000560620 TTC21AQ8NDW8 1320 aa18.15■□□□□ 0.5
CTDSPL2-209ENST00000560620 CPSF1Q10570 1443 aaKnown RBP18.15■□□□□ 0.5
CTDSPL2-209ENST00000560620 NRKQ7Z2Y5 1582 aa18.14■□□□□ 0.49
CTDSPL2-209ENST00000560620 EVA1CP58658 441 aa18.14■□□□□ 0.49
CTDSPL2-209ENST00000560620 PIK3C2AO00443 1686 aa18.13■□□□□ 0.49
CTDSPL2-209ENST00000560620 SSH2Q76I76 1423 aa18.13■□□□□ 0.49
CTDSPL2-209ENST00000560620 CDCA8Q53HL2 280 aa18.12■□□□□ 0.49
CTDSPL2-209ENST00000560620 GLI3P10071 1580 aa18.12■□□□□ 0.49
CTDSPL2-209ENST00000560620 MON2Q7Z3U7 1717 aa18.12■□□□□ 0.49
CTDSPL2-209ENST00000560620 NRAPQ86VF7 1730 aa18.11■□□□□ 0.49
CTDSPL2-209ENST00000560620 CD163L1Q9NR16 1453 aa18.1■□□□□ 0.49
CTDSPL2-209ENST00000560620 A0A1W2PP64 1363 aa18.1■□□□□ 0.49
CTDSPL2-209ENST00000560620 NINLQ9Y2I6 1382 aa18.1■□□□□ 0.49
CTDSPL2-209ENST00000560620 KCNH5Q8NCM2 988 aa18.1■□□□□ 0.49
CTDSPL2-209ENST00000560620 CPDO75976 1380 aa18.09■□□□□ 0.49
CTDSPL2-209ENST00000560620 FAM98CQ17RN3 349 aaKnown RBP18.09■□□□□ 0.49
CTDSPL2-209ENST00000560620 SEPT12Q8IYM1 358 aa18.09■□□□□ 0.49
CTDSPL2-209ENST00000560620 UPF1Q92900 1129 aaKnown RBP eCLIP18.09■□□□□ 0.49
CTDSPL2-209ENST00000560620 POLR3GLQ9BT43 218 aa18.09■□□□□ 0.49
CTDSPL2-209ENST00000560620 USP35Q9P2H5 1018 aa18.09■□□□□ 0.49
CTDSPL2-209ENST00000560620 EDC4Q6P2E9 1401 aaKnown RBP18.08■□□□□ 0.49
CTDSPL2-209ENST00000560620 EIF4G2P78344 907 aaKnown RBP eCLIP18.08■□□□□ 0.48
CTDSPL2-209ENST00000560620 NME9Q86XW9 330 aa18.08■□□□□ 0.48
CTDSPL2-209ENST00000560620 ZRANB1Q9UGI0 708 aa18.07■□□□□ 0.48
CTDSPL2-209ENST00000560620 SLIT3O75094 1523 aa18.07■□□□□ 0.48
CTDSPL2-209ENST00000560620 SPATA31A5Q5VU36 1347 aa18.06■□□□□ 0.48
CTDSPL2-209ENST00000560620 SPATA31A7Q8IWB4 1347 aa18.06■□□□□ 0.48
CTDSPL2-209ENST00000560620 CAMTA1Q9Y6Y1 1673 aa18.05■□□□□ 0.48
CTDSPL2-209ENST00000560620 HSPA5P11021 654 aaKnown RBP18.04■□□□□ 0.48
CTDSPL2-209ENST00000560620 LARP1Q6PKG0 1096 aaKnown RBP18.04■□□□□ 0.48
CTDSPL2-209ENST00000560620 ANKRD36BQ8N2N9 1353 aa18.04■□□□□ 0.48
CTDSPL2-209ENST00000560620 SPATA31A1Q5TZJ5 1347 aa18.03■□□□□ 0.48
CTDSPL2-209ENST00000560620 AATKQ6ZMQ8 1374 aa18.03■□□□□ 0.48
CTDSPL2-209ENST00000560620 LMO7Q8WWI1 1683 aa18.03■□□□□ 0.48
CTDSPL2-209ENST00000560620 BRWD3Q6RI45 1802 aa18.02■□□□□ 0.48
CTDSPL2-209ENST00000560620 ONECUT3O60422 494 aaPredicted RBP18.02■□□□□ 0.48
CTDSPL2-209ENST00000560620 KRT27Q7Z3Y8 459 aa18.02■□□□□ 0.48
CTDSPL2-209ENST00000560620 USP31Q70CQ4 1352 aa18.02■□□□□ 0.47
CTDSPL2-209ENST00000560620 CSB-PGBD3P0DP91 1061 aa18.01■□□□□ 0.47
CTDSPL2-209ENST00000560620 ARHGEF25Q86VW2 580 aa18.01■□□□□ 0.47
CTDSPL2-209ENST00000560620 COG3Q96JB2 828 aa18.01■□□□□ 0.47
CTDSPL2-209ENST00000560620 TOM1L2Q6ZVM7 507 aa18■□□□□ 0.47
CTDSPL2-209ENST00000560620 COL5A2P05997 1499 aaPredicted RBP18■□□□□ 0.47
CTDSPL2-209ENST00000560620 AXIN2Q9Y2T1 843 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms