RNA–Protein interactions for RNA: ENST00000560307.5

SNRPA1-209, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 2

Gene SNRPA1, Length 433 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-209ENST00000560307 PRDM2Q13029 1718 aa8.15□□□□□ -1.11
SNRPA1-209ENST00000560307 LRRC9Q6ZRR7 1453 aa8.14□□□□□ -1.11
SNRPA1-209ENST00000560307 AVPP01185 164 aa8.14□□□□□ -1.11
SNRPA1-209ENST00000560307 SNRPBP14678 240 aaKnown RBP8.14□□□□□ -1.11
SNRPA1-209ENST00000560307 PRR14Q9BWN1 585 aa8.14□□□□□ -1.11
SNRPA1-209ENST00000560307 GPCPD1Q9NPB8 672 aa8.14□□□□□ -1.11
SNRPA1-209ENST00000560307 PKD2L1Q9P0L9 805 aa8.14□□□□□ -1.11
SNRPA1-209ENST00000560307 POLR1AO95602 1720 aaPredicted RBP8.14□□□□□ -1.11
SNRPA1-209ENST00000560307 KIF27Q86VH2 1401 aa8.13□□□□□ -1.11
SNRPA1-209ENST00000560307 DDX10Q13206 875 aaKnown RBP8.13□□□□□ -1.11
SNRPA1-209ENST00000560307 SH3D19Q5HYK7 790 aa8.13□□□□□ -1.11
SNRPA1-209ENST00000560307 KANK4Q5T7N3 995 aaPredicted RBP8.13□□□□□ -1.11
SNRPA1-209ENST00000560307 BICRAQ9NZM4 1560 aa8.13□□□□□ -1.11
SNRPA1-209ENST00000560307 NCOA2Q15596 1464 aa8.13□□□□□ -1.11
SNRPA1-209ENST00000560307 ATAD2BQ9ULI0 1458 aa8.13□□□□□ -1.11
SNRPA1-209ENST00000560307 TRAK2O60296 914 aa8.12□□□□□ -1.11
SNRPA1-209ENST00000560307 SSTR3P32745 418 aaPredicted RBP8.12□□□□□ -1.11
SNRPA1-209ENST00000560307 CYP4X1Q8N118 509 aa8.12□□□□□ -1.11
SNRPA1-209ENST00000560307 CCDC82Q8N4S0 544 aa8.12□□□□□ -1.11
SNRPA1-209ENST00000560307 ABCA5Q8WWZ7 1642 aa8.11□□□□□ -1.11
SNRPA1-209ENST00000560307 A6NJR5 290 aa8.11□□□□□ -1.11
SNRPA1-209ENST00000560307 RANGAP1P46060 587 aaPredicted RBP8.11□□□□□ -1.11
SNRPA1-209ENST00000560307 CERKQ8TCT0 537 aa8.11□□□□□ -1.11
SNRPA1-209ENST00000560307 SLC16A10Q8TF71 515 aa8.11□□□□□ -1.11
SNRPA1-209ENST00000560307 BEGAINQ9BUH8 593 aa8.11□□□□□ -1.11
SNRPA1-209ENST00000560307 NOP58Q9Y2X3 529 aaKnown RBP8.11□□□□□ -1.11
SNRPA1-209ENST00000560307 NCAPD3P42695 1498 aa8.11□□□□□ -1.11
SNRPA1-209ENST00000560307 MCM6Q14566 821 aa8.1□□□□□ -1.11
SNRPA1-209ENST00000560307 FAM161AQ3B820 660 aa8.1□□□□□ -1.11
SNRPA1-209ENST00000560307 PLA2G2CQ5R387 149 aa8.1□□□□□ -1.11
SNRPA1-209ENST00000560307 NPDC1Q9NQX5 325 aaPredicted RBP8.1□□□□□ -1.11
SNRPA1-209ENST00000560307 POLR3EQ9NVU0 708 aa8.1□□□□□ -1.11
SNRPA1-209ENST00000560307 AQRO60306 1485 aaKnown RBP eCLIP8.1□□□□□ -1.11
SNRPA1-209ENST00000560307 RAD21O60216 631 aa8.09□□□□□ -1.11
SNRPA1-209ENST00000560307 PDIA4P13667 645 aaKnown RBP8.09□□□□□ -1.11
SNRPA1-209ENST00000560307 ITGAEP38570 1179 aa8.09□□□□□ -1.11
SNRPA1-209ENST00000560307 SKIV2LQ15477 1246 aaKnown RBP8.09□□□□□ -1.11
SNRPA1-209ENST00000560307 NLRP7Q8WX94 980 aa8.09□□□□□ -1.11
SNRPA1-209ENST00000560307 ZNF777Q9ULD5 760 aaPredicted RBP8.09□□□□□ -1.11
SNRPA1-209ENST00000560307 GMPRP36959 345 aa8.08□□□□□ -1.12
SNRPA1-209ENST00000560307 SMCPP49901 116 aaPredicted RBP8.08□□□□□ -1.12
SNRPA1-209ENST00000560307 PROCA1Q8NCQ7 364 aaPredicted RBP8.08□□□□□ -1.12
SNRPA1-209ENST00000560307 PHOX2BQ99453 314 aa8.08□□□□□ -1.12
SNRPA1-209ENST00000560307 ATP13A2Q9NQ11 1180 aa8.08□□□□□ -1.12
SNRPA1-209ENST00000560307 TOR4AQ9NXH8 423 aa8.08□□□□□ -1.12
SNRPA1-209ENST00000560307 EFCAB5A4FU69 1503 aa8.08□□□□□ -1.12
SNRPA1-209ENST00000560307 CUX1P39880 1505 aa8.08□□□□□ -1.12
SNRPA1-209ENST00000560307 HECW1Q76N89 1606 aa8.07□□□□□ -1.12
SNRPA1-209ENST00000560307 FYCO1Q9BQS8 1478 aa8.07□□□□□ -1.12
SNRPA1-209ENST00000560307 UACAQ9BZF9 1416 aa8.07□□□□□ -1.12
SNRPA1-209ENST00000560307 CNTLNQ9NXG0 1405 aa8.07□□□□□ -1.12
SNRPA1-209ENST00000560307 TRIM52Q96A61 297 aa8.07□□□□□ -1.12
SNRPA1-209ENST00000560307 TRIM47Q96LD4 638 aa8.07□□□□□ -1.12
SNRPA1-209ENST00000560307 SENP2Q9HC62 589 aa8.07□□□□□ -1.12
SNRPA1-209ENST00000560307 HMGXB3Q12766 1538 aa8.07□□□□□ -1.12
SNRPA1-209ENST00000560307 KDM5BQ9UGL1 1544 aa8.07□□□□□ -1.12
SNRPA1-209ENST00000560307 PCF11O94913 1555 aaKnown RBP8.06□□□□□ -1.12
SNRPA1-209ENST00000560307 PROSER2Q86WR7 435 aaPredicted RBP8.06□□□□□ -1.12
SNRPA1-209ENST00000560307 KCTD17Q8N5Z5 321 aa8.06□□□□□ -1.12
SNRPA1-209ENST00000560307 TONSLQ96HA7 1378 aa8.06□□□□□ -1.12
SNRPA1-209ENST00000560307 PTPN23Q9H3S7 1636 aa8.06□□□□□ -1.12
SNRPA1-209ENST00000560307 ZBED9Q6R2W3 1325 aa8.05□□□□□ -1.12
SNRPA1-209ENST00000560307 ADH1BP00325 375 aa8.05□□□□□ -1.12
SNRPA1-209ENST00000560307 RTL5Q5HYW3 569 aaPredicted RBP8.05□□□□□ -1.12
SNRPA1-209ENST00000560307 POM121Q96HA1 1249 aa8.05□□□□□ -1.12
SNRPA1-209ENST00000560307 SLC6A16Q9GZN6 736 aa8.05□□□□□ -1.12
SNRPA1-209ENST00000560307 USP35Q9P2H5 1018 aa8.05□□□□□ -1.12
SNRPA1-209ENST00000560307 GCC2Q8IWJ2 1684 aa8.05□□□□□ -1.12
SNRPA1-209ENST00000560307 HFM1A2PYH4 1435 aa8.04□□□□□ -1.12
SNRPA1-209ENST00000560307 ZBTB7CA1YPR0 619 aa8.04□□□□□ -1.12
SNRPA1-209ENST00000560307 TTC24A2A3L6 582 aaPredicted RBP8.04□□□□□ -1.12
SNRPA1-209ENST00000560307 OATP04181 439 aa8.04□□□□□ -1.12
SNRPA1-209ENST00000560307 HNRNPUQ00839 825 aaKnown RBP eCLIP8.04□□□□□ -1.12
SNRPA1-209ENST00000560307 CCDC97Q96F63 343 aaPredicted RBP8.04□□□□□ -1.12
SNRPA1-209ENST00000560307 FAM217BQ9NTX9 383 aaPredicted RBP8.04□□□□□ -1.12
SNRPA1-209ENST00000560307 PHLDB1Q86UU1 1377 aa8.04□□□□□ -1.12
SNRPA1-209ENST00000560307 CCDC18Q5T9S5 1454 aa8.04□□□□□ -1.12
SNRPA1-209ENST00000560307 THOC2Q8NI27 1593 aaKnown RBP8.04□□□□□ -1.12
SNRPA1-209ENST00000560307 LORP23490 312 aaPredicted RBP8.03□□□□□ -1.12
SNRPA1-209ENST00000560307 ANP32AP39687 249 aaKnown RBP8.03□□□□□ -1.12
SNRPA1-209ENST00000560307 PADI6Q6TGC4 694 aa8.03□□□□□ -1.12
SNRPA1-209ENST00000560307 METTL3Q86U44 580 aaKnown RBP8.03□□□□□ -1.12
SNRPA1-209ENST00000560307 AKNAQ7Z591 1439 aa8.03□□□□□ -1.12
SNRPA1-209ENST00000560307 SMG6Q86US8 1419 aaKnown RBP8.03□□□□□ -1.12
SNRPA1-209ENST00000560307 WASHC2AQ641Q2 1341 aa8.03□□□□□ -1.12
SNRPA1-209ENST00000560307 KIF21AQ7Z4S6 1674 aa8.02□□□□□ -1.13
SNRPA1-209ENST00000560307 IPO9Q96P70 1041 aaKnown RBP8.02□□□□□ -1.13
SNRPA1-209ENST00000560307 RNF123Q5XPI4 1314 aa8.02□□□□□ -1.13
SNRPA1-209ENST00000560307 CLK2P49760 499 aaKnown RBP8.01□□□□□ -1.13
SNRPA1-209ENST00000560307 MYSM1Q5VVJ2 828 aa8.01□□□□□ -1.13
SNRPA1-209ENST00000560307 IRF7Q92985 503 aa8.01□□□□□ -1.13
SNRPA1-209ENST00000560307 CASKIN1Q8WXD9 1431 aa8.01□□□□□ -1.13
SNRPA1-209ENST00000560307 FGD5Q6ZNL6 1462 aa8□□□□□ -1.13
SNRPA1-209ENST00000560307 CTTNBP2Q8WZ74 1663 aa8□□□□□ -1.13
SNRPA1-209ENST00000560307 UBE2Q2Q8WVN8 375 aa8□□□□□ -1.13
SNRPA1-209ENST00000560307 KIFC2Q96AC6 838 aa8□□□□□ -1.13
SNRPA1-209ENST00000560307 SIN3AQ96ST3 1273 aa8□□□□□ -1.13
SNRPA1-209ENST00000560307 FGD6Q6ZV73 1430 aa8□□□□□ -1.13
SNRPA1-209ENST00000560307 NCOA1Q15788 1441 aa7.99□□□□□ -1.13
SNRPA1-209ENST00000560307 KMT5BQ4FZB7 885 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms