RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 RGPD8O14715 1765 aaPredicted RBP15.16■□□□□ 0.02
USP3-218ENST00000560202 MSH6P52701 1360 aa15.15■□□□□ 0.02
USP3-218ENST00000560202 CADPS2Q86UW7 1296 aa15.15■□□□□ 0.02
USP3-218ENST00000560202 TTC21BQ7Z4L5 1316 aa15.15■□□□□ 0.02
USP3-218ENST00000560202 C1orf167Q5SNV9 1468 aa15.13■□□□□ 0.01
USP3-218ENST00000560202 SSH2Q76I76 1423 aa15.13■□□□□ 0.01
USP3-218ENST00000560202 NME9Q86XW9 330 aa15.13■□□□□ 0.01
USP3-218ENST00000560202 POTEDQ86YR6 584 aa15.13■□□□□ 0.01
USP3-218ENST00000560202 ORAI2Q96SN7 254 aa15.13■□□□□ 0.01
USP3-218ENST00000560202 MST1RQ04912 1400 aa15.13■□□□□ 0.01
USP3-218ENST00000560202 TNNT2P45379 298 aaPredicted RBP15.12■□□□□ 0.01
USP3-218ENST00000560202 PNISRQ8TF01 805 aaKnown RBP15.12■□□□□ 0.01
USP3-218ENST00000560202 NRKQ7Z2Y5 1582 aa15.12■□□□□ 0.01
USP3-218ENST00000560202 XIRP1Q702N8 1843 aaKnown RBP15.11■□□□□ 0.01
USP3-218ENST00000560202 TTC21AQ8NDW8 1320 aa15.11■□□□□ 0.01
USP3-218ENST00000560202 FAM9BQ8IZU0 186 aa15.11■□□□□ 0.01
USP3-218ENST00000560202 KIF20BQ96Q89 1820 aa15.11■□□□□ 0.01
USP3-218ENST00000560202 ZRANB1Q9UGI0 708 aa15.1■□□□□ 0.01
USP3-218ENST00000560202 COG3Q96JB2 828 aa15.09■□□□□ 0.01
USP3-218ENST00000560202 ANKRD26Q9UPS8 1709 aa15.09■□□□□ 0.01
USP3-218ENST00000560202 PSME1Q06323 249 aa15.09■□□□□ 0.01
USP3-218ENST00000560202 FOXO3O43524 673 aa15.08■□□□□ 0
USP3-218ENST00000560202 MTHFSP49914 203 aa15.07■□□□□ 0
USP3-218ENST00000560202 KIF1AQ12756 1690 aa15.06■□□□□ 0
USP3-218ENST00000560202 OVOS2A0A0J9YW53 1432 aa15.06■□□□□ 0
USP3-218ENST00000560202 OVOS2Q6IE36 1432 aa15.06■□□□□ 0
USP3-218ENST00000560202 LTBP4Q8N2S1 1624 aa15.06■□□□□ 0
USP3-218ENST00000560202 PAK3O75914 559 aaPredicted RBP15.06■□□□□ 0
USP3-218ENST00000560202 SLAIN2Q9P270 581 aa15.05■□□□□ -0
USP3-218ENST00000560202 GTF3C3Q9Y5Q9 886 aa15.05■□□□□ -0
USP3-218ENST00000560202 USP31Q70CQ4 1352 aa15.05■□□□□ -0
USP3-218ENST00000560202 AATKQ6ZMQ8 1374 aa15.03■□□□□ -0
USP3-218ENST00000560202 XPCQ01831 940 aaPredicted RBP15.03■□□□□ -0
USP3-218ENST00000560202 KRT28Q7Z3Y7 464 aa15.03■□□□□ -0
USP3-218ENST00000560202 ABTB2Q8N961 1025 aa15.03■□□□□ -0
USP3-218ENST00000560202 CFAP53Q96M91 514 aa15.03■□□□□ -0
USP3-218ENST00000560202 FBLN1P23142 703 aa15.03■□□□□ -0
USP3-218ENST00000560202 NLRP6P59044 892 aa15.03■□□□□ -0
USP3-218ENST00000560202 BRINP3Q76B58 766 aa15.03■□□□□ -0
USP3-218ENST00000560202 POLKQ9UBT6 870 aa15.03■□□□□ -0
USP3-218ENST00000560202 PIK3C2AO00443 1686 aa15.02□□□□□ -0.01
USP3-218ENST00000560202 NPHP3Q7Z494 1330 aa15.02□□□□□ -0.01
USP3-218ENST00000560202 WDR43Q15061 677 aaKnown RBP eCLIP15.01□□□□□ -0.01
USP3-218ENST00000560202 HNRNPUQ00839 825 aaKnown RBP eCLIP15□□□□□ -0.01
USP3-218ENST00000560202 NUTM2GQ5VZR2 741 aa15□□□□□ -0.01
USP3-218ENST00000560202 ADAMTS8Q9UP79 889 aa15□□□□□ -0.01
USP3-218ENST00000560202 DDX17Q92841 729 aaKnown RBP15□□□□□ -0.01
USP3-218ENST00000560202 EMILIN1Q9Y6C2 1016 aa15□□□□□ -0.01
USP3-218ENST00000560202 PNPLA6Q8IY17 1366 aa14.99□□□□□ -0.01
USP3-218ENST00000560202 PPM1GO15355 546 aaPredicted RBP14.99□□□□□ -0.01
USP3-218ENST00000560202 RRS1Q15050 365 aaKnown RBP14.99□□□□□ -0.01
USP3-218ENST00000560202 INSRP06213 1382 aa14.98□□□□□ -0.01
USP3-218ENST00000560202 SMG6Q86US8 1419 aaKnown RBP14.98□□□□□ -0.01
USP3-218ENST00000560202 SOX12O15370 315 aa14.97□□□□□ -0.01
USP3-218ENST00000560202 TRPM3Q9HCF6 1732 aaPredicted RBP14.97□□□□□ -0.01
USP3-218ENST00000560202 SBNO1A3KN83 1393 aa14.97□□□□□ -0.01
USP3-218ENST00000560202 USP54Q70EL1 1684 aa14.97□□□□□ -0.01
USP3-218ENST00000560202 LMOD2Q6P5Q4 547 aa14.97□□□□□ -0.01
USP3-218ENST00000560202 COL3A1P02461 1466 aaPredicted RBP14.96□□□□□ -0.01
USP3-218ENST00000560202 PXDNQ92626 1479 aa14.96□□□□□ -0.02
USP3-218ENST00000560202 DIAPH1O60610 1272 aaKnown RBP14.95□□□□□ -0.02
USP3-218ENST00000560202 NUDCQ9Y266 331 aa14.95□□□□□ -0.02
USP3-218ENST00000560202 BLMP54132 1417 aaPredicted RBP14.95□□□□□ -0.02
USP3-218ENST00000560202 CDK12Q9NYV4 1490 aaPredicted RBP14.95□□□□□ -0.02
USP3-218ENST00000560202 MARF1Q9Y4F3 1742 aaKnown RBP14.94□□□□□ -0.02
USP3-218ENST00000560202 MAP3K19Q56UN5 1328 aa14.94□□□□□ -0.02
USP3-218ENST00000560202 MAP2P11137 1827 aaKnown RBP14.94□□□□□ -0.02
USP3-218ENST00000560202 SHPRHQ149N8 1683 aa14.94□□□□□ -0.02
USP3-218ENST00000560202 SOS2Q07890 1332 aaPredicted RBP14.94□□□□□ -0.02
USP3-218ENST00000560202 KCNH5Q8NCM2 988 aa14.93□□□□□ -0.02
USP3-218ENST00000560202 TNS3Q68CZ2 1445 aa14.93□□□□□ -0.02
USP3-218ENST00000560202 USP19O94966 1318 aa14.93□□□□□ -0.02
USP3-218ENST00000560202 SPATA31A3Q5VYP0 1347 aa14.93□□□□□ -0.02
USP3-218ENST00000560202 ALS2Q96Q42 1657 aa14.92□□□□□ -0.02
USP3-218ENST00000560202 U2SURPO15042 1029 aaKnown RBP14.92□□□□□ -0.02
USP3-218ENST00000560202 U2AF1L5P0DN76 240 aaPredicted RBP14.92□□□□□ -0.02
USP3-218ENST00000560202 U2AF1Q01081 240 aaKnown RBP eCLIP14.92□□□□□ -0.02
USP3-218ENST00000560202 ZBED9Q6R2W3 1325 aa14.91□□□□□ -0.02
USP3-218ENST00000560202 GCP02774 474 aa14.91□□□□□ -0.02
USP3-218ENST00000560202 SLIT3O75094 1523 aa14.9□□□□□ -0.02
USP3-218ENST00000560202 IL13P35225 146 aa14.9□□□□□ -0.02
USP3-218ENST00000560202 AMPHP49418 695 aa14.9□□□□□ -0.02
USP3-218ENST00000560202 ARHGEF10O15013 1369 aa14.9□□□□□ -0.02
USP3-218ENST00000560202 FLT4P35916 1363 aa14.9□□□□□ -0.02
USP3-218ENST00000560202 KIF24Q5T7B8 1368 aa14.9□□□□□ -0.02
USP3-218ENST00000560202 NFAT5O94916 1531 aa14.9□□□□□ -0.02
USP3-218ENST00000560202 SENP3-EIF4A1A0A087X0R7 540 aa14.9□□□□□ -0.02
USP3-218ENST00000560202 PLEKHG5O94827 1062 aa14.9□□□□□ -0.02
USP3-218ENST00000560202 HSP90AB2PQ58FF8 381 aa14.9□□□□□ -0.02
USP3-218ENST00000560202 CCDC146Q8IYE0 955 aa14.9□□□□□ -0.02
USP3-218ENST00000560202 PEAK1Q9H792 1746 aa14.89□□□□□ -0.03
USP3-218ENST00000560202 TOM1O60784 492 aa14.89□□□□□ -0.03
USP3-218ENST00000560202 NHSL1Q5SYE7 1610 aa14.88□□□□□ -0.03
USP3-218ENST00000560202 EIF4A2Q14240 407 aaKnown RBP14.88□□□□□ -0.03
USP3-218ENST00000560202 MED1Q15648 1581 aaPredicted RBP14.88□□□□□ -0.03
USP3-218ENST00000560202 HOXC9P31274 260 aa14.87□□□□□ -0.03
USP3-218ENST00000560202 RUNDC1Q96C34 613 aa14.87□□□□□ -0.03
USP3-218ENST00000560202 ROBO1Q9Y6N7 1651 aa14.87□□□□□ -0.03
USP3-218ENST00000560202 RTL1A6NKG5 1358 aa14.86□□□□□ -0.03
USP3-218ENST00000560202 ARHGEF25Q86VW2 580 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms