RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 COG3Q96JB2 828 aa16.81■□□□□ 0.28
USP3-213ENST00000559711 POLKQ9UBT6 870 aa16.81■□□□□ 0.28
USP3-213ENST00000559711 AKAP12Q02952 1782 aa16.81■□□□□ 0.28
USP3-213ENST00000559711 KIF20BQ96Q89 1820 aa16.81■□□□□ 0.28
USP3-213ENST00000559711 CCDC146Q8IYE0 955 aa16.81■□□□□ 0.28
USP3-213ENST00000559711 COL3A1P02461 1466 aaPredicted RBP16.8■□□□□ 0.28
USP3-213ENST00000559711 SHPRHQ149N8 1683 aa16.8■□□□□ 0.28
USP3-213ENST00000559711 APAF1O14727 1248 aa16.8■□□□□ 0.28
USP3-213ENST00000559711 ZRANB1Q9UGI0 708 aa16.8■□□□□ 0.28
USP3-213ENST00000559711 ADGRL3Q9HAR2 1447 aa16.8■□□□□ 0.28
USP3-213ENST00000559711 PMFBP1Q8TBY8 1022 aa16.79■□□□□ 0.28
USP3-213ENST00000559711 RUNDC1Q96C34 613 aa16.79■□□□□ 0.28
USP3-213ENST00000559711 TTC21AQ8NDW8 1320 aa16.79■□□□□ 0.28
USP3-213ENST00000559711 NWD1Q149M9 1564 aa16.79■□□□□ 0.28
USP3-213ENST00000559711 NGDNQ8NEJ9 315 aaKnown RBP16.78■□□□□ 0.28
USP3-213ENST00000559711 ITSN1Q15811 1721 aa16.78■□□□□ 0.28
USP3-213ENST00000559711 CDCA7LQ96GN5 454 aa16.78■□□□□ 0.28
USP3-213ENST00000559711 RNF123Q5XPI4 1314 aa16.77■□□□□ 0.28
USP3-213ENST00000559711 NCBP3Q53F19 620 aaKnown RBP16.77■□□□□ 0.28
USP3-213ENST00000559711 NRKQ7Z2Y5 1582 aa16.77■□□□□ 0.27
USP3-213ENST00000559711 FMN2Q9NZ56 1722 aa16.77■□□□□ 0.27
USP3-213ENST00000559711 DIAPH1O60610 1272 aaKnown RBP16.76■□□□□ 0.27
USP3-213ENST00000559711 U2AF1L5P0DN76 240 aaPredicted RBP16.76■□□□□ 0.27
USP3-213ENST00000559711 U2AF1Q01081 240 aaKnown RBP eCLIP16.76■□□□□ 0.27
USP3-213ENST00000559711 OVOS2A0A0J9YW53 1432 aa16.75■□□□□ 0.27
USP3-213ENST00000559711 OVOS2Q6IE36 1432 aa16.75■□□□□ 0.27
USP3-213ENST00000559711 FBLN1P23142 703 aa16.75■□□□□ 0.27
USP3-213ENST00000559711 RBM33Q96EV2 1170 aaKnown RBP16.75■□□□□ 0.27
USP3-213ENST00000559711 USP31Q70CQ4 1352 aa16.74■□□□□ 0.27
USP3-213ENST00000559711 GOLGA2Q08379 1002 aa16.74■□□□□ 0.27
USP3-213ENST00000559711 ERICH6BQ5W0A0 696 aa16.74■□□□□ 0.27
USP3-213ENST00000559711 PROSER2Q86WR7 435 aaPredicted RBP16.74■□□□□ 0.27
USP3-213ENST00000559711 NALCNQ8IZF0 1738 aa16.74■□□□□ 0.27
USP3-213ENST00000559711 HSPA2P54652 639 aa16.73■□□□□ 0.27
USP3-213ENST00000559711 TCP11L2Q8N4U5 519 aa16.73■□□□□ 0.27
USP3-213ENST00000559711 PHF8Q9UPP1 1060 aa16.73■□□□□ 0.27
USP3-213ENST00000559711 EMILIN1Q9Y6C2 1016 aa16.73■□□□□ 0.27
USP3-213ENST00000559711 TRMT2AQ8IZ69 625 aaKnown RBP16.72■□□□□ 0.27
USP3-213ENST00000559711 PHF23Q9BUL5 403 aaPredicted RBP16.72■□□□□ 0.27
USP3-213ENST00000559711 CDK12Q9NYV4 1490 aaPredicted RBP16.72■□□□□ 0.27
USP3-213ENST00000559711 U2SURPO15042 1029 aaKnown RBP16.72■□□□□ 0.27
USP3-213ENST00000559711 SLFN5Q08AF3 891 aa16.72■□□□□ 0.27
USP3-213ENST00000559711 PLEKHF1Q96S99 279 aa16.72■□□□□ 0.27
USP3-213ENST00000559711 IQSEC2Q5JU85 1478 aa16.71■□□□□ 0.27
USP3-213ENST00000559711 PPM1GO15355 546 aaPredicted RBP16.71■□□□□ 0.27
USP3-213ENST00000559711 CCDC27Q2M243 656 aa16.71■□□□□ 0.27
USP3-213ENST00000559711 DUSP27Q5VZP5 1158 aa16.71■□□□□ 0.27
USP3-213ENST00000559711 C14orf37Q86TY3 774 aa16.71■□□□□ 0.27
USP3-213ENST00000559711 IL13P35225 146 aa16.7■□□□□ 0.26
USP3-213ENST00000559711 RRS1Q15050 365 aaKnown RBP16.7■□□□□ 0.26
USP3-213ENST00000559711 WWC1Q8IX03 1113 aa16.7■□□□□ 0.26
USP3-213ENST00000559711 PNNQ9H307 717 aaKnown RBP16.7■□□□□ 0.26
USP3-213ENST00000559711 NCOA3Q9Y6Q9 1424 aa16.7■□□□□ 0.26
USP3-213ENST00000559711 LMTK3Q96Q04 1460 aa16.7■□□□□ 0.26
USP3-213ENST00000559711 FCHSD2O94868 740 aa16.69■□□□□ 0.26
USP3-213ENST00000559711 C19orf44Q9H6X5 657 aa16.69■□□□□ 0.26
USP3-213ENST00000559711 RCAN3Q9UKA8 241 aa16.69■□□□□ 0.26
USP3-213ENST00000559711 RGPD8O14715 1765 aaPredicted RBP16.68■□□□□ 0.26
USP3-213ENST00000559711 E9PSI1 815 aa16.68■□□□□ 0.26
USP3-213ENST00000559711 ESCO1Q5FWF5 840 aa16.67■□□□□ 0.26
USP3-213ENST00000559711 IRX6P78412 446 aaPredicted RBP16.66■□□□□ 0.26
USP3-213ENST00000559711 WDR63Q8IWG1 891 aa16.66■□□□□ 0.26
USP3-213ENST00000559711 SPINK5Q9NQ38 1064 aaPredicted RBP16.66■□□□□ 0.26
USP3-213ENST00000559711 RSPH6AQ9H0K4 717 aa16.65■□□□□ 0.26
USP3-213ENST00000559711 RRP7AQ9Y3A4 280 aaKnown RBP16.65■□□□□ 0.26
USP3-213ENST00000559711 TMEM94Q12767 1356 aa16.65■□□□□ 0.26
USP3-213ENST00000559711 MAP2P11137 1827 aaKnown RBP16.65■□□□□ 0.26
USP3-213ENST00000559711 NLRP6P59044 892 aa16.65■□□□□ 0.26
USP3-213ENST00000559711 DMRT2Q9Y5R5 561 aa16.65■□□□□ 0.26
USP3-213ENST00000559711 TMPOP42166 694 aaKnown RBP16.64■□□□□ 0.25
USP3-213ENST00000559711 NEUROD2Q15784 382 aa16.64■□□□□ 0.25
USP3-213ENST00000559711 MAPK8IP3Q9UPT6 1336 aa16.63■□□□□ 0.25
USP3-213ENST00000559711 ABTB2Q8N961 1025 aa16.63■□□□□ 0.25
USP3-213ENST00000559711 ORAI2Q96SN7 254 aa16.63■□□□□ 0.25
USP3-213ENST00000559711 DCCP43146 1447 aa16.63■□□□□ 0.25
USP3-213ENST00000559711 RRP1P56182 461 aaKnown RBP16.62■□□□□ 0.25
USP3-213ENST00000559711 PSME1Q06323 249 aa16.62■□□□□ 0.25
USP3-213ENST00000559711 PIK3C2AO00443 1686 aa16.62■□□□□ 0.25
USP3-213ENST00000559711 C1orf167Q5SNV9 1468 aa16.62■□□□□ 0.25
USP3-213ENST00000559711 MAP3K19Q56UN5 1328 aa16.62■□□□□ 0.25
USP3-213ENST00000559711 LRRC7Q96NW7 1537 aa16.62■□□□□ 0.25
USP3-213ENST00000559711 PAK3O75914 559 aaPredicted RBP16.61■□□□□ 0.25
USP3-213ENST00000559711 PRKAR2BP31323 418 aa16.61■□□□□ 0.25
USP3-213ENST00000559711 EIF4A2Q14240 407 aaKnown RBP16.61■□□□□ 0.25
USP3-213ENST00000559711 SBNO1A3KN83 1393 aa16.61■□□□□ 0.25
USP3-213ENST00000559711 ATF3P18847 181 aa16.6■□□□□ 0.25
USP3-213ENST00000559711 TRIM35Q9UPQ4 493 aa16.6■□□□□ 0.25
USP3-213ENST00000559711 KIF24Q5T7B8 1368 aa16.6■□□□□ 0.25
USP3-213ENST00000559711 USP54Q70EL1 1684 aa16.59■□□□□ 0.25
USP3-213ENST00000559711 HSP90AB2PQ58FF8 381 aa16.59■□□□□ 0.25
USP3-213ENST00000559711 PPP4R2Q9NY27 417 aa16.59■□□□□ 0.25
USP3-213ENST00000559711 STRCP1A6NGW2 1772 aa16.59■□□□□ 0.25
USP3-213ENST00000559711 FLT4P35916 1363 aa16.59■□□□□ 0.25
USP3-213ENST00000559711 FOXO3O43524 673 aa16.59■□□□□ 0.25
USP3-213ENST00000559711 HMOX1P09601 288 aa16.59■□□□□ 0.25
USP3-213ENST00000559711 MST1RQ04912 1400 aa16.58■□□□□ 0.25
USP3-213ENST00000559711 NEFMP07197 916 aa16.58■□□□□ 0.24
USP3-213ENST00000559711 RIPK4P57078 832 aa16.58■□□□□ 0.24
USP3-213ENST00000559711 NUTM2GQ5VZR2 741 aa16.58■□□□□ 0.24
USP3-213ENST00000559711 CADPS2Q86UW7 1296 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms