RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 RBM6P78332 1123 aaKnown RBP14.58□□□□□ -0.08
USP3-207ENST00000558218 QTRT2Q9H974 415 aaKnown RBP14.58□□□□□ -0.08
USP3-207ENST00000558218 SBNO1A3KN83 1393 aa14.58□□□□□ -0.08
USP3-207ENST00000558218 XPCQ01831 940 aaPredicted RBP14.57□□□□□ -0.08
USP3-207ENST00000558218 MINK1Q8N4C8 1332 aaPredicted RBP14.57□□□□□ -0.08
USP3-207ENST00000558218 RGPD8O14715 1765 aaPredicted RBP14.57□□□□□ -0.08
USP3-207ENST00000558218 L3MBTL2Q969R5 705 aa14.56□□□□□ -0.08
USP3-207ENST00000558218 PROM2Q8N271 834 aa14.55□□□□□ -0.08
USP3-207ENST00000558218 HIRIP3Q9BW71 556 aaPredicted RBP14.55□□□□□ -0.08
USP3-207ENST00000558218 USP21Q9UK80 565 aa14.55□□□□□ -0.08
USP3-207ENST00000558218 TRPC5Q9UL62 973 aaPredicted RBP14.55□□□□□ -0.08
USP3-207ENST00000558218 TRIM26Q12899 539 aaPredicted RBP14.54□□□□□ -0.08
USP3-207ENST00000558218 NBPF1Q3BBV0 1214 aa14.54□□□□□ -0.08
USP3-207ENST00000558218 ARHGEF10O15013 1369 aa14.54□□□□□ -0.08
USP3-207ENST00000558218 TULP4Q9NRJ4 1543 aa14.53□□□□□ -0.08
USP3-207ENST00000558218 GPRASP1Q5JY77 1395 aa14.53□□□□□ -0.08
USP3-207ENST00000558218 PMFBP1Q8TBY8 1022 aa14.53□□□□□ -0.08
USP3-207ENST00000558218 SIN3AQ96ST3 1273 aa14.53□□□□□ -0.08
USP3-207ENST00000558218 ARHGEF28Q8N1W1 1705 aaKnown RBP14.52□□□□□ -0.08
USP3-207ENST00000558218 USP32Q8NFA0 1604 aa14.52□□□□□ -0.08
USP3-207ENST00000558218 TNS3Q68CZ2 1445 aa14.52□□□□□ -0.08
USP3-207ENST00000558218 PRR36Q9H6K5 1346 aa14.52□□□□□ -0.08
USP3-207ENST00000558218 NUDT16Q96DE0 195 aaKnown RBP14.52□□□□□ -0.09
USP3-207ENST00000558218 CDK19Q9BWU1 502 aa14.52□□□□□ -0.09
USP3-207ENST00000558218 CCDC61Q9Y6R9 512 aa14.52□□□□□ -0.09
USP3-207ENST00000558218 NGDNQ8NEJ9 315 aaKnown RBP14.51□□□□□ -0.09
USP3-207ENST00000558218 MARF1Q9Y4F3 1742 aaKnown RBP14.5□□□□□ -0.09
USP3-207ENST00000558218 NEUROD1Q13562 356 aa14.5□□□□□ -0.09
USP3-207ENST00000558218 CENPJQ9HC77 1338 aaPredicted RBP14.49□□□□□ -0.09
USP3-207ENST00000558218 PLEKHG3A1L390 1219 aa14.49□□□□□ -0.09
USP3-207ENST00000558218 HAP1P54257 671 aaPredicted RBP14.49□□□□□ -0.09
USP3-207ENST00000558218 BCL9LQ86UU0 1499 aa14.49□□□□□ -0.09
USP3-207ENST00000558218 LMOD2Q6P5Q4 547 aa14.48□□□□□ -0.09
USP3-207ENST00000558218 UNC5CLQ8IV45 518 aa14.48□□□□□ -0.09
USP3-207ENST00000558218 ATRNO75882 1429 aa14.48□□□□□ -0.09
USP3-207ENST00000558218 GJD4Q96KN9 370 aaPredicted RBP14.47□□□□□ -0.09
USP3-207ENST00000558218 ITSN1Q15811 1721 aa14.46□□□□□ -0.09
USP3-207ENST00000558218 SLIT2O94813 1529 aa14.46□□□□□ -0.09
USP3-207ENST00000558218 ATP7BP35670 1465 aa14.46□□□□□ -0.09
USP3-207ENST00000558218 UPF1Q92900 1129 aaKnown RBP eCLIP14.46□□□□□ -0.09
USP3-207ENST00000558218 POLR3AO14802 1390 aaPredicted RBP14.46□□□□□ -0.1
USP3-207ENST00000558218 NBPF8Q3BBV2 869 aa14.45□□□□□ -0.1
USP3-207ENST00000558218 CABLES1Q8TDN4 633 aa14.45□□□□□ -0.1
USP3-207ENST00000558218 TRPM3Q9HCF6 1732 aaPredicted RBP14.44□□□□□ -0.1
USP3-207ENST00000558218 BRD4O60885 1362 aaPredicted RBP14.44□□□□□ -0.1
USP3-207ENST00000558218 ACEP12821 1306 aa14.43□□□□□ -0.1
USP3-207ENST00000558218 RGS12O14924 1447 aa14.43□□□□□ -0.1
USP3-207ENST00000558218 FAM83GA6ND36 823 aa14.43□□□□□ -0.1
USP3-207ENST00000558218 HAX1O00165 279 aa14.43□□□□□ -0.1
USP3-207ENST00000558218 PAK3O75914 559 aaPredicted RBP14.43□□□□□ -0.1
USP3-207ENST00000558218 SRPK2P78362 688 aaKnown RBP14.43□□□□□ -0.1
USP3-207ENST00000558218 ROCK2O75116 1388 aaKnown RBP14.43□□□□□ -0.1
USP3-207ENST00000558218 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.43□□□□□ -0.1
USP3-207ENST00000558218 ALS2Q96Q42 1657 aa14.42□□□□□ -0.1
USP3-207ENST00000558218 EVC2Q86UK5 1308 aa14.42□□□□□ -0.1
USP3-207ENST00000558218 TRPM1Q7Z4N2 1603 aa14.42□□□□□ -0.1
USP3-207ENST00000558218 VPS72Q15906 364 aa14.42□□□□□ -0.1
USP3-207ENST00000558218 CREBZFQ9NS37 354 aa14.42□□□□□ -0.1
USP3-207ENST00000558218 ONECUT3O60422 494 aaPredicted RBP14.41□□□□□ -0.1
USP3-207ENST00000558218 SP7Q8TDD2 431 aaPredicted RBP14.4□□□□□ -0.1
USP3-207ENST00000558218 NWD2Q9ULI1 1742 aa14.4□□□□□ -0.1
USP3-207ENST00000558218 ATAD2Q6PL18 1390 aa14.39□□□□□ -0.11
USP3-207ENST00000558218 TONSLQ96HA7 1378 aa14.39□□□□□ -0.11
USP3-207ENST00000558218 CCDC125Q86Z20 511 aa14.39□□□□□ -0.11
USP3-207ENST00000558218 CABP2Q9NPB3 220 aa14.39□□□□□ -0.11
USP3-207ENST00000558218 TOPAZ1Q8N9V7 1692 aa14.39□□□□□ -0.11
USP3-207ENST00000558218 SLC24A1O60721 1099 aa14.38□□□□□ -0.11
USP3-207ENST00000558218 ABTB2Q8N961 1025 aa14.38□□□□□ -0.11
USP3-207ENST00000558218 PPIP5K1Q6PFW1 1433 aa14.38□□□□□ -0.11
USP3-207ENST00000558218 ABCA3Q99758 1704 aa14.38□□□□□ -0.11
USP3-207ENST00000558218 SBNO2Q9Y2G9 1366 aa14.37□□□□□ -0.11
USP3-207ENST00000558218 QRICH2Q9H0J4 1663 aa14.37□□□□□ -0.11
USP3-207ENST00000558218 NLRP13Q86W25 1043 aa14.37□□□□□ -0.11
USP3-207ENST00000558218 CABP1Q9NZU7 370 aa14.37□□□□□ -0.11
USP3-207ENST00000558218 RALGAPBQ86X10 1494 aa14.37□□□□□ -0.11
USP3-207ENST00000558218 CARD11Q9BXL7 1154 aa14.36□□□□□ -0.11
USP3-207ENST00000558218 BTG4Q9NY30 223 aa14.36□□□□□ -0.11
USP3-207ENST00000558218 COL14A1Q05707 1796 aaKnown RBP14.35□□□□□ -0.11
USP3-207ENST00000558218 PLEKHG5O94827 1062 aa14.35□□□□□ -0.11
USP3-207ENST00000558218 PUS7Q96PZ0 661 aaKnown RBP14.35□□□□□ -0.11
USP3-207ENST00000558218 PRDM11Q9NQV5 511 aa14.35□□□□□ -0.11
USP3-207ENST00000558218 TIMELESSQ9UNS1 1208 aa14.35□□□□□ -0.11
USP3-207ENST00000558218 EVX2Q03828 476 aa14.34□□□□□ -0.11
USP3-207ENST00000558218 FARP1Q9Y4F1 1045 aaPredicted RBP14.34□□□□□ -0.11
USP3-207ENST00000558218 PLCH1Q4KWH8 1693 aa14.33□□□□□ -0.11
USP3-207ENST00000558218 CRYBG1Q9Y4K1 1723 aa14.33□□□□□ -0.12
USP3-207ENST00000558218 SEPT12Q8IYM1 358 aa14.33□□□□□ -0.12
USP3-207ENST00000558218 CCDC9Q9Y3X0 531 aaKnown RBP14.33□□□□□ -0.12
USP3-207ENST00000558218 GLI3P10071 1580 aa14.33□□□□□ -0.12
USP3-207ENST00000558218 USP19O94966 1318 aa14.33□□□□□ -0.12
USP3-207ENST00000558218 CPDO75976 1380 aa14.33□□□□□ -0.12
USP3-207ENST00000558218 CLSPNQ9HAW4 1339 aa14.32□□□□□ -0.12
USP3-207ENST00000558218 USP6P35125 1406 aa14.32□□□□□ -0.12
USP3-207ENST00000558218 GCP02774 474 aa14.31□□□□□ -0.12
USP3-207ENST00000558218 NUTM2GQ5VZR2 741 aa14.31□□□□□ -0.12
USP3-207ENST00000558218 SPATA31A5Q5VU36 1347 aa14.31□□□□□ -0.12
USP3-207ENST00000558218 SPATA31A7Q8IWB4 1347 aa14.31□□□□□ -0.12
USP3-207ENST00000558218 KIAA0232Q92628 1395 aa14.31□□□□□ -0.12
USP3-207ENST00000558218 SSH2Q76I76 1423 aa14.31□□□□□ -0.12
USP3-207ENST00000558218 ZC3H6P61129 1189 aaKnown RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms