RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 RAD51AP2Q09MP3 1159 aa16.89■□□□□ 0.29
SHMT2-226ENST00000556825 KRT222Q8N1A0 295 aa16.89■□□□□ 0.29
SHMT2-226ENST00000556825 DENND4BO75064 1496 aaPredicted RBP16.89■□□□□ 0.29
SHMT2-226ENST00000556825 BAG4O95429 457 aaKnown RBP16.88■□□□□ 0.29
SHMT2-226ENST00000556825 HNRNPH2P55795 449 aaKnown RBP16.88■□□□□ 0.29
SHMT2-226ENST00000556825 DUSP27Q5VZP5 1158 aa16.88■□□□□ 0.29
SHMT2-226ENST00000556825 RASSF4Q9H2L5 321 aa16.88■□□□□ 0.29
SHMT2-226ENST00000556825 CARMIL2Q6F5E8 1435 aa16.88■□□□□ 0.29
SHMT2-226ENST00000556825 CDK13Q14004 1512 aaKnown RBP16.88■□□□□ 0.29
SHMT2-226ENST00000556825 CHAF1AQ13111 956 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-226ENST00000556825 FAM43BQ6ZT52 329 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-226ENST00000556825 RAPGEF6Q8TEU7 1601 aa16.87■□□□□ 0.29
SHMT2-226ENST00000556825 SLC26A8Q96RN1 970 aa16.87■□□□□ 0.29
SHMT2-226ENST00000556825 ARID3CA6NKF2 412 aa16.86■□□□□ 0.29
SHMT2-226ENST00000556825 GUCY2CP25092 1073 aa16.86■□□□□ 0.29
SHMT2-226ENST00000556825 SATB1Q01826 763 aa16.86■□□□□ 0.29
SHMT2-226ENST00000556825 NBPF20Q3BBV1 942 aa16.86■□□□□ 0.29
SHMT2-226ENST00000556825 LRSAM1Q6UWE0 723 aa16.86■□□□□ 0.29
SHMT2-226ENST00000556825 FBXO3Q9UK99 471 aa16.86■□□□□ 0.29
SHMT2-226ENST00000556825 CGNL1Q0VF96 1302 aa16.86■□□□□ 0.29
SHMT2-226ENST00000556825 SSFA2P28290 1259 aa16.85■□□□□ 0.29
SHMT2-226ENST00000556825 NCBP1Q09161 790 aaKnown RBP16.85■□□□□ 0.29
SHMT2-226ENST00000556825 KIF18AQ8NI77 898 aa16.85■□□□□ 0.29
SHMT2-226ENST00000556825 HSP90AB3PQ58FF7 597 aa16.85■□□□□ 0.29
SHMT2-226ENST00000556825 CYP2C19P33261 490 aa16.84■□□□□ 0.29
SHMT2-226ENST00000556825 CLUAP1Q96AJ1 413 aa16.84■□□□□ 0.29
SHMT2-226ENST00000556825 FAM53CQ9NYF3 392 aa16.83■□□□□ 0.28
SHMT2-226ENST00000556825 NUP153P49790 1475 aaKnown RBP16.83■□□□□ 0.28
SHMT2-226ENST00000556825 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-226ENST00000556825 RAD50Q92878 1312 aa16.82■□□□□ 0.28
SHMT2-226ENST00000556825 CHD1O14646 1710 aa16.82■□□□□ 0.28
SHMT2-226ENST00000556825 TEX14Q8IWB6 1497 aa16.82■□□□□ 0.28
SHMT2-226ENST00000556825 LMBRD1Q9NUN5 540 aa16.82■□□□□ 0.28
SHMT2-226ENST00000556825 PARD3Q8TEW0 1356 aa16.81■□□□□ 0.28
SHMT2-226ENST00000556825 PMFBP1Q8TBY8 1022 aa16.81■□□□□ 0.28
SHMT2-226ENST00000556825 USP47Q96K76 1375 aa16.81■□□□□ 0.28
SHMT2-226ENST00000556825 REC8O95072 547 aa16.8■□□□□ 0.28
SHMT2-226ENST00000556825 TMX1Q9H3N1 280 aa16.8■□□□□ 0.28
SHMT2-226ENST00000556825 PDZRN3Q9UPQ7 1066 aa16.8■□□□□ 0.28
SHMT2-226ENST00000556825 TCOF1Q13428 1488 aaKnown RBP16.8■□□□□ 0.28
SHMT2-226ENST00000556825 KIF16BQ96L93 1317 aa16.8■□□□□ 0.28
SHMT2-226ENST00000556825 TRHP20396 242 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-226ENST00000556825 CASQ1P31415 396 aa16.8■□□□□ 0.28
SHMT2-226ENST00000556825 PLCD4Q9BRC7 762 aa16.8■□□□□ 0.28
SHMT2-226ENST00000556825 C17orf53Q8N3J3 647 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-226ENST00000556825 DONSONQ9NYP3 566 aa16.79■□□□□ 0.28
SHMT2-226ENST00000556825 RPRD2Q5VT52 1461 aaKnown RBP16.79■□□□□ 0.28
SHMT2-226ENST00000556825 PDE3AQ14432 1141 aa16.78■□□□□ 0.28
SHMT2-226ENST00000556825 MCTP1Q6DN14 999 aa16.78■□□□□ 0.28
SHMT2-226ENST00000556825 CCDC9Q9Y3X0 531 aaKnown RBP16.78■□□□□ 0.28
SHMT2-226ENST00000556825 RRP7BPQ9NSQ0 103 aa16.77■□□□□ 0.28
SHMT2-226ENST00000556825 CHIC2Q9UKJ5 165 aa16.77■□□□□ 0.28
SHMT2-226ENST00000556825 PLB1Q6P1J6 1458 aa16.77■□□□□ 0.28
SHMT2-226ENST00000556825 GOLGA6L6A8MZA4 724 aa16.77■□□□□ 0.27
SHMT2-226ENST00000556825 GOLGA2Q08379 1002 aa16.76■□□□□ 0.27
SHMT2-226ENST00000556825 MUM1L1Q5H9M0 696 aa16.76■□□□□ 0.27
SHMT2-226ENST00000556825 GPATCH11Q8N954 259 aa16.76■□□□□ 0.27
SHMT2-226ENST00000556825 IRF6O14896 467 aa16.76■□□□□ 0.27
SHMT2-226ENST00000556825 TTC12Q9H892 705 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-226ENST00000556825 RAI14Q9P0K7 980 aa16.75■□□□□ 0.27
SHMT2-226ENST00000556825 RBM27Q9P2N5 1060 aaKnown RBP16.75■□□□□ 0.27
SHMT2-226ENST00000556825 KIF1CO43896 1103 aaKnown RBP16.74■□□□□ 0.27
SHMT2-226ENST00000556825 MPHOSPH9Q99550 1183 aa16.74■□□□□ 0.27
SHMT2-226ENST00000556825 ZNF521Q96K83 1311 aa16.74■□□□□ 0.27
SHMT2-226ENST00000556825 SYCE3A1L190 88 aa16.74■□□□□ 0.27
SHMT2-226ENST00000556825 NOL10Q9BSC4 688 aaKnown RBP16.74■□□□□ 0.27
SHMT2-226ENST00000556825 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-226ENST00000556825 PRG4Q92954 1404 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-226ENST00000556825 GOLIM4O00461 696 aa16.73■□□□□ 0.27
SHMT2-226ENST00000556825 RNF214Q8ND24 703 aa16.73■□□□□ 0.27
SHMT2-226ENST00000556825 GPT2Q8TD30 523 aa16.73■□□□□ 0.27
SHMT2-226ENST00000556825 FOXD4L1Q9NU39 408 aa16.73■□□□□ 0.27
SHMT2-226ENST00000556825 KDM6BO15054 1643 aa16.73■□□□□ 0.27
SHMT2-226ENST00000556825 GCC2Q8IWJ2 1684 aa16.73■□□□□ 0.27
SHMT2-226ENST00000556825 K7ELQ4 463 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-226ENST00000556825 GYS2P54840 703 aa16.73■□□□□ 0.27
SHMT2-226ENST00000556825 SLFN5Q08AF3 891 aa16.73■□□□□ 0.27
SHMT2-226ENST00000556825 POLKQ9UBT6 870 aa16.73■□□□□ 0.27
SHMT2-226ENST00000556825 KIAA1524Q8TCG1 905 aa16.72■□□□□ 0.27
SHMT2-226ENST00000556825 ZNF446Q9NWS9 450 aa16.72■□□□□ 0.27
SHMT2-226ENST00000556825 PLEKHH1Q9ULM0 1364 aa16.72■□□□□ 0.27
SHMT2-226ENST00000556825 MYO1CO00159 1063 aa16.72■□□□□ 0.27
SHMT2-226ENST00000556825 BCAR3O75815 825 aa16.72■□□□□ 0.27
SHMT2-226ENST00000556825 MAP2K1Q02750 393 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-226ENST00000556825 TRMT2AQ8IZ69 625 aaKnown RBP16.72■□□□□ 0.27
SHMT2-226ENST00000556825 TMEM63CQ9P1W3 806 aa16.72■□□□□ 0.27
SHMT2-226ENST00000556825 SH3BP1Q9Y3L3 701 aa16.72■□□□□ 0.27
SHMT2-226ENST00000556825 JRKLQ9Y4A0 524 aa16.72■□□□□ 0.27
SHMT2-226ENST00000556825 KDM5CP41229 1560 aa16.71■□□□□ 0.27
SHMT2-226ENST00000556825 UVSSAQ2YD98 709 aa16.71■□□□□ 0.27
SHMT2-226ENST00000556825 NFATC2IPQ8NCF5 419 aa16.71■□□□□ 0.27
SHMT2-226ENST00000556825 MNS1Q8NEH6 495 aa16.71■□□□□ 0.27
SHMT2-226ENST00000556825 ZNF397Q8NF99 534 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-226ENST00000556825 KIF1BPQ96EK5 621 aa16.71■□□□□ 0.27
SHMT2-226ENST00000556825 TOMM22Q9NS69 142 aa16.71■□□□□ 0.27
SHMT2-226ENST00000556825 ABCA8O94911 1581 aa16.71■□□□□ 0.27
SHMT2-226ENST00000556825 TROQ12816 1431 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-226ENST00000556825 NUCB2P80303 420 aa16.7■□□□□ 0.26
SHMT2-226ENST00000556825 RNF217Q8TC41 542 aa16.7■□□□□ 0.26
SHMT2-226ENST00000556825 TSPY26PQ9H489 355 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms