RNA–Protein interactions for RNA: ENST00000556433.5

ACTN1-220, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 1,259 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-220ENST00000556433 PLCH1Q4KWH8 1693 aa32.57■■■□□ 2.8
ACTN1-220ENST00000556433 ONECUT3O60422 494 aaPredicted RBP32.57■■■□□ 2.8
ACTN1-220ENST00000556433 NBPF8Q3BBV2 869 aa32.57■■■□□ 2.8
ACTN1-220ENST00000556433 ACEP12821 1306 aa32.56■■■□□ 2.8
ACTN1-220ENST00000556433 CENPJQ9HC77 1338 aaPredicted RBP32.56■■■□□ 2.8
ACTN1-220ENST00000556433 PLEKHG3A1L390 1219 aa32.56■■■□□ 2.8
ACTN1-220ENST00000556433 ITSN1Q15811 1721 aa32.54■■■□□ 2.8
ACTN1-220ENST00000556433 NEUROD1Q13562 356 aa32.54■■■□□ 2.8
ACTN1-220ENST00000556433 SRPK2P78362 688 aaKnown RBP32.53■■■□□ 2.8
ACTN1-220ENST00000556433 PRDM11Q9NQV5 511 aa32.52■■■□□ 2.8
ACTN1-220ENST00000556433 POLR3AO14802 1390 aaPredicted RBP32.52■■■□□ 2.8
ACTN1-220ENST00000556433 NUTM2GQ5VZR2 741 aa32.51■■■□□ 2.79
ACTN1-220ENST00000556433 A0A0G2JS52 829 aa32.49■■■□□ 2.79
ACTN1-220ENST00000556433 MYT1Q01538 1121 aa32.49■■■□□ 2.79
ACTN1-220ENST00000556433 KRT27Q7Z3Y8 459 aa32.49■■■□□ 2.79
ACTN1-220ENST00000556433 CABP2Q9NPB3 220 aa32.49■■■□□ 2.79
ACTN1-220ENST00000556433 FAM98CQ17RN3 349 aaKnown RBP32.48■■■□□ 2.79
ACTN1-220ENST00000556433 COL14A1Q05707 1796 aaKnown RBP32.47■■■□□ 2.79
ACTN1-220ENST00000556433 ZC3H6P61129 1189 aaKnown RBP32.45■■■□□ 2.79
ACTN1-220ENST00000556433 ABTB2Q8N961 1025 aa32.45■■■□□ 2.79
ACTN1-220ENST00000556433 KIAA0232Q92628 1395 aa32.45■■■□□ 2.78
ACTN1-220ENST00000556433 BRWD3Q6RI45 1802 aa32.44■■■□□ 2.78
ACTN1-220ENST00000556433 CHRNA2Q15822 529 aa32.44■■■□□ 2.78
ACTN1-220ENST00000556433 BLMP54132 1417 aaPredicted RBP32.43■■■□□ 2.78
ACTN1-220ENST00000556433 ZRANB1Q9UGI0 708 aa32.43■■■□□ 2.78
ACTN1-220ENST00000556433 SPATA31A5Q5VU36 1347 aa32.43■■■□□ 2.78
ACTN1-220ENST00000556433 SPATA31A7Q8IWB4 1347 aa32.43■■■□□ 2.78
ACTN1-220ENST00000556433 TOPAZ1Q8N9V7 1692 aa32.43■■■□□ 2.78
ACTN1-220ENST00000556433 NRAPQ86VF7 1730 aa32.43■■■□□ 2.78
ACTN1-220ENST00000556433 PPIP5K1Q6PFW1 1433 aa32.43■■■□□ 2.78
ACTN1-220ENST00000556433 CRYBG1Q9Y4K1 1723 aa32.42■■■□□ 2.78
ACTN1-220ENST00000556433 EP400Q96L91 3159 aa32.41■■■□□ 2.78
ACTN1-220ENST00000556433 SF3B2Q13435 895 aaKnown RBP32.41■■■□□ 2.78
ACTN1-220ENST00000556433 CABP1Q9NZU7 370 aa32.39■■■□□ 2.78
ACTN1-220ENST00000556433 STRN4Q9NRL3 753 aa32.38■■■□□ 2.77
ACTN1-220ENST00000556433 DEFB132Q7Z7B7 95 aa32.37■■■□□ 2.77
ACTN1-220ENST00000556433 ROCK2O75116 1388 aaKnown RBP32.36■■■□□ 2.77
ACTN1-220ENST00000556433 NLRP13Q86W25 1043 aa32.36■■■□□ 2.77
ACTN1-220ENST00000556433 EVC2Q86UK5 1308 aa32.35■■■□□ 2.77
ACTN1-220ENST00000556433 QRICH2Q9H0J4 1663 aa32.34■■■□□ 2.77
ACTN1-220ENST00000556433 EVA1CP58658 441 aa32.33■■■□□ 2.77
ACTN1-220ENST00000556433 SPATA31A1Q5TZJ5 1347 aa32.32■■■□□ 2.76
ACTN1-220ENST00000556433 PHRF1Q9P1Y6 1649 aaKnown RBP32.32■■■□□ 2.76
ACTN1-220ENST00000556433 USP19O94966 1318 aa32.31■■■□□ 2.76
ACTN1-220ENST00000556433 TRPM1Q7Z4N2 1603 aa32.31■■■□□ 2.76
ACTN1-220ENST00000556433 BRD4O60885 1362 aaPredicted RBP32.31■■■□□ 2.76
ACTN1-220ENST00000556433 GCP02774 474 aa32.3■■■□□ 2.76
ACTN1-220ENST00000556433 FAM182BQ5T319 152 aa32.28■■■□□ 2.76
ACTN1-220ENST00000556433 USP35Q9P2H5 1018 aa32.27■■■□□ 2.76
ACTN1-220ENST00000556433 CPDO75976 1380 aa32.27■■■□□ 2.76
ACTN1-220ENST00000556433 NLRP6P59044 892 aa32.26■■■□□ 2.75
ACTN1-220ENST00000556433 USP6P35125 1406 aa32.26■■■□□ 2.75
ACTN1-220ENST00000556433 NRKQ7Z2Y5 1582 aa32.24■■■□□ 2.75
ACTN1-220ENST00000556433 BAG6P46379 1132 aa32.23■■■□□ 2.75
ACTN1-220ENST00000556433 LARP1Q6PKG0 1096 aaKnown RBP32.23■■■□□ 2.75
ACTN1-220ENST00000556433 SSH2Q76I76 1423 aa32.22■■■□□ 2.75
ACTN1-220ENST00000556433 CAMTA1Q9Y6Y1 1673 aa32.21■■■□□ 2.75
ACTN1-220ENST00000556433 ZNF692Q9BU19 519 aaPredicted RBP32.21■■■□□ 2.75
ACTN1-220ENST00000556433 ZBTB7CA1YPR0 619 aa32.2■■■□□ 2.75
ACTN1-220ENST00000556433 THSD7AQ9UPZ6 1657 aa32.19■■■□□ 2.74
ACTN1-220ENST00000556433 BARGINQ6ZT62 677 aa32.19■■■□□ 2.74
ACTN1-220ENST00000556433 CARD11Q9BXL7 1154 aa32.19■■■□□ 2.74
ACTN1-220ENST00000556433 TCP11L2Q8N4U5 519 aa32.16■■■□□ 2.74
ACTN1-220ENST00000556433 TTC21BQ7Z4L5 1316 aa32.15■■■□□ 2.74
ACTN1-220ENST00000556433 TONSLQ96HA7 1378 aa32.15■■■□□ 2.74
ACTN1-220ENST00000556433 EN1Q05925 392 aaPredicted RBP32.14■■■□□ 2.74
ACTN1-220ENST00000556433 FAM196AQ6ZSG2 479 aa32.14■■■□□ 2.74
ACTN1-220ENST00000556433 PDE3BQ13370 1112 aa32.13■■■□□ 2.73
ACTN1-220ENST00000556433 LMO7Q8WWI1 1683 aa32.12■■■□□ 2.73
ACTN1-220ENST00000556433 THRAP3Q9Y2W1 955 aaKnown RBP32.12■■■□□ 2.73
ACTN1-220ENST00000556433 AATKQ6ZMQ8 1374 aa32.1■■■□□ 2.73
ACTN1-220ENST00000556433 TRIM37O94972 964 aa32.09■■■□□ 2.73
ACTN1-220ENST00000556433 SLIT3O75094 1523 aa32.09■■■□□ 2.73
ACTN1-220ENST00000556433 COL5A2P05997 1499 aaPredicted RBP32.09■■■□□ 2.73
ACTN1-220ENST00000556433 TTC21AQ8NDW8 1320 aa32.08■■■□□ 2.73
ACTN1-220ENST00000556433 TRIM26Q12899 539 aaPredicted RBP32.08■■■□□ 2.73
ACTN1-220ENST00000556433 KTN1Q86UP2 1357 aaKnown RBP32.07■■■□□ 2.73
ACTN1-220ENST00000556433 SBNO2Q9Y2G9 1366 aa32.07■■■□□ 2.73
ACTN1-220ENST00000556433 KCNH5Q8NCM2 988 aa32.06■■■□□ 2.72
ACTN1-220ENST00000556433 CPSF1Q10570 1443 aaKnown RBP32.06■■■□□ 2.72
ACTN1-220ENST00000556433 SOX12O15370 315 aa32.05■■■□□ 2.72
ACTN1-220ENST00000556433 RGPD1P0DJD0 1748 aa32.05■■■□□ 2.72
ACTN1-220ENST00000556433 PIK3C2AO00443 1686 aa32.05■■■□□ 2.72
ACTN1-220ENST00000556433 CRB1P82279 1406 aa32.04■■■□□ 2.72
ACTN1-220ENST00000556433 TOM1L2Q6ZVM7 507 aa32.03■■■□□ 2.72
ACTN1-220ENST00000556433 ARHGEF25Q86VW2 580 aa32.03■■■□□ 2.72
ACTN1-220ENST00000556433 TMC1Q8TDI8 760 aa32.03■■■□□ 2.72
ACTN1-220ENST00000556433 AXIN2Q9Y2T1 843 aa32.03■■■□□ 2.72
ACTN1-220ENST00000556433 SRCAPQ6ZRS2 3230 aa32.03■■■□□ 2.72
ACTN1-220ENST00000556433 PSDA5PKW4 1024 aaPredicted RBP32.02■■■□□ 2.72
ACTN1-220ENST00000556433 APBA3O96018 575 aa32.01■■■□□ 2.71
ACTN1-220ENST00000556433 EZH2Q15910 746 aaKnown RBP32.01■■■□□ 2.71
ACTN1-220ENST00000556433 DISP2A7MBM2 1401 aa32■■■□□ 2.71
ACTN1-220ENST00000556433 AKAP12Q02952 1782 aa32■■■□□ 2.71
ACTN1-220ENST00000556433 SUGP2Q8IX01 1082 aaKnown RBP eCLIP32■■■□□ 2.712e-7■■■■□ 20.7
ACTN1-220ENST00000556433 CAMKK2Q96RR4 588 aa31.98■■■□□ 2.71
ACTN1-220ENST00000556433 SLC12A5Q9H2X9 1139 aa31.97■■■□□ 2.71
ACTN1-220ENST00000556433 WDR17Q8IZU2 1322 aa31.97■■■□□ 2.71
ACTN1-220ENST00000556433 HDGFL2Q7Z4V5 671 aaPredicted RBP31.96■■■□□ 2.71
ACTN1-220ENST00000556433 TNS1Q9HBL0 1735 aaKnown RBP31.95■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms