RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 PSME1Q06323 249 aa15.23■□□□□ 0.03
SHMT2-220ENST00000555634 SLAIN2Q9P270 581 aa15.23■□□□□ 0.03
SHMT2-220ENST00000555634 ALS2Q96Q42 1657 aa15.22■□□□□ 0.03
SHMT2-220ENST00000555634 AHDC1Q5TGY3 1603 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-220ENST00000555634 PAK3O75914 559 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-220ENST00000555634 RALBP1Q15311 655 aa15.2■□□□□ 0.02
SHMT2-220ENST00000555634 CNGB1Q14028 1251 aaPredicted RBP15.19■□□□□ 0.02
SHMT2-220ENST00000555634 CC2D1BQ5T0F9 858 aaKnown RBP15.19■□□□□ 0.02
SHMT2-220ENST00000555634 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.19■□□□□ 0.02
SHMT2-220ENST00000555634 CERKQ8TCT0 537 aa15.19■□□□□ 0.02
SHMT2-220ENST00000555634 ORAI2Q96SN7 254 aa15.19■□□□□ 0.02
SHMT2-220ENST00000555634 LTN1O94822 1766 aa15.19■□□□□ 0.02
SHMT2-220ENST00000555634 SCAF1Q9H7N4 1312 aaKnown RBP15.18■□□□□ 0.02
SHMT2-220ENST00000555634 PHRF1Q9P1Y6 1649 aaKnown RBP15.18■□□□□ 0.02
SHMT2-220ENST00000555634 MAP2P11137 1827 aaKnown RBP15.18■□□□□ 0.02
SHMT2-220ENST00000555634 BRINP3Q76B58 766 aa15.18■□□□□ 0.02
SHMT2-220ENST00000555634 PXDNQ92626 1479 aa15.18■□□□□ 0.02
SHMT2-220ENST00000555634 TNS3Q68CZ2 1445 aa15.17■□□□□ 0.02
SHMT2-220ENST00000555634 MARF1Q9Y4F3 1742 aaKnown RBP15.17■□□□□ 0.02
SHMT2-220ENST00000555634 SBNO1A3KN83 1393 aa15.17■□□□□ 0.02
SHMT2-220ENST00000555634 ARHGEF10O15013 1369 aa15.17■□□□□ 0.02
SHMT2-220ENST00000555634 PARD3Q8TEW0 1356 aa15.17■□□□□ 0.02
SHMT2-220ENST00000555634 UBAP1LF5GYI3 381 aa15.17■□□□□ 0.02
SHMT2-220ENST00000555634 FOXO3O43524 673 aa15.17■□□□□ 0.02
SHMT2-220ENST00000555634 MORC1Q86VD1 984 aa15.17■□□□□ 0.02
SHMT2-220ENST00000555634 COG3Q96JB2 828 aa15.17■□□□□ 0.02
SHMT2-220ENST00000555634 CARD14Q9BXL6 1004 aa15.17■□□□□ 0.02
SHMT2-220ENST00000555634 ABCA3Q99758 1704 aa15.17■□□□□ 0.02
SHMT2-220ENST00000555634 TTC21BQ7Z4L5 1316 aa15.17■□□□□ 0.02
SHMT2-220ENST00000555634 MED1Q15648 1581 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-220ENST00000555634 PER1O15534 1290 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-220ENST00000555634 MYBBP1AQ9BQG0 1328 aaKnown RBP15.16■□□□□ 0.02
SHMT2-220ENST00000555634 AMER1Q5JTC6 1135 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-220ENST00000555634 KRT28Q7Z3Y7 464 aa15.15■□□□□ 0.02
SHMT2-220ENST00000555634 SSH2Q76I76 1423 aa15.15■□□□□ 0.02
SHMT2-220ENST00000555634 LMOD2Q6P5Q4 547 aa15.14■□□□□ 0.01
SHMT2-220ENST00000555634 ABTB2Q8N961 1025 aa15.14■□□□□ 0.01
SHMT2-220ENST00000555634 PRKRIP1Q9H875 184 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-220ENST00000555634 OVOS2A0A0J9YW53 1432 aa15.14■□□□□ 0.01
SHMT2-220ENST00000555634 OVOS2Q6IE36 1432 aa15.14■□□□□ 0.01
SHMT2-220ENST00000555634 CRYBG1Q9Y4K1 1723 aa15.14■□□□□ 0.01
SHMT2-220ENST00000555634 COL16A1Q07092 1604 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-220ENST00000555634 GGNBP2Q9H3C7 697 aa15.13■□□□□ 0.01
SHMT2-220ENST00000555634 SHPRHQ149N8 1683 aa15.12■□□□□ 0.01
SHMT2-220ENST00000555634 PIP4K2BP78356 416 aa15.12■□□□□ 0.01
SHMT2-220ENST00000555634 COL22A1Q8NFW1 1626 aaPredicted RBP15.12■□□□□ 0.01
SHMT2-220ENST00000555634 USP31Q70CQ4 1352 aa15.11■□□□□ 0.01
SHMT2-220ENST00000555634 XPCQ01831 940 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-220ENST00000555634 NLRP13Q86W25 1043 aa15.11■□□□□ 0.01
SHMT2-220ENST00000555634 NME9Q86XW9 330 aa15.11■□□□□ 0.01
SHMT2-220ENST00000555634 FYB1O15117 783 aa15.1■□□□□ 0.01
SHMT2-220ENST00000555634 NLRP6P59044 892 aa15.1■□□□□ 0.01
SHMT2-220ENST00000555634 SLIT3O75094 1523 aa15.1■□□□□ 0.01
SHMT2-220ENST00000555634 HAP1P54257 671 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-220ENST00000555634 KCNH5Q8NCM2 988 aa15.09■□□□□ 0.01
SHMT2-220ENST00000555634 CFAP53Q96M91 514 aa15.09■□□□□ 0.01
SHMT2-220ENST00000555634 SOS2Q07890 1332 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-220ENST00000555634 CCER2I3L3R5 266 aa15.08■□□□□ 0
SHMT2-220ENST00000555634 TNNT2P45379 298 aaPredicted RBP15.08■□□□□ 0
SHMT2-220ENST00000555634 FAM208AQ9UK61 1670 aaKnown RBP15.08■□□□□ 0
SHMT2-220ENST00000555634 SPATA31A3Q5VYP0 1347 aa15.08■□□□□ 0
SHMT2-220ENST00000555634 CDK12Q9NYV4 1490 aaPredicted RBP15.08■□□□□ 0
SHMT2-220ENST00000555634 ABCC6O95255 1503 aa15.07■□□□□ 0
SHMT2-220ENST00000555634 AATKQ6ZMQ8 1374 aa15.07■□□□□ 0
SHMT2-220ENST00000555634 MIER1Q8N108 512 aa15.06■□□□□ 0
SHMT2-220ENST00000555634 LRRC59Q96AG4 307 aaKnown RBP15.06■□□□□ 0
SHMT2-220ENST00000555634 NFAT5O94916 1531 aa15.06■□□□□ 0
SHMT2-220ENST00000555634 MRS2Q9HD23 443 aa15.05■□□□□ -0
SHMT2-220ENST00000555634 RTL1A6NKG5 1358 aa15.05■□□□□ -0
SHMT2-220ENST00000555634 SMG6Q86US8 1419 aaKnown RBP15.05■□□□□ -0
SHMT2-220ENST00000555634 KIF24Q5T7B8 1368 aa15.04■□□□□ -0
SHMT2-220ENST00000555634 PPP2R1AP30153 589 aa15.04■□□□□ -0
SHMT2-220ENST00000555634 NUTM2GQ5VZR2 741 aa15.04■□□□□ -0
SHMT2-220ENST00000555634 DDX17Q92841 729 aaKnown RBP15.04■□□□□ -0
SHMT2-220ENST00000555634 USP19O94966 1318 aa15.03■□□□□ -0
SHMT2-220ENST00000555634 FLT4P35916 1363 aa15.02■□□□□ -0
SHMT2-220ENST00000555634 SOX12O15370 315 aa15.02■□□□□ -0
SHMT2-220ENST00000555634 COL14A1Q05707 1796 aaKnown RBP15.02□□□□□ -0.01
SHMT2-220ENST00000555634 RGPD5Q99666 1765 aa15.01□□□□□ -0.01
SHMT2-220ENST00000555634 PEAK1Q9H792 1746 aa15.01□□□□□ -0.01
SHMT2-220ENST00000555634 PPM1GO15355 546 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-220ENST00000555634 WDR43Q15061 677 aaKnown RBP eCLIP15□□□□□ -0.01
SHMT2-220ENST00000555634 ZRANB1Q9UGI0 708 aa15□□□□□ -0.01
SHMT2-220ENST00000555634 PLCH1Q4KWH8 1693 aa15□□□□□ -0.01
SHMT2-220ENST00000555634 PNPLA6Q8IY17 1366 aa14.99□□□□□ -0.01
SHMT2-220ENST00000555634 JCADQ9P266 1359 aa14.99□□□□□ -0.01
SHMT2-220ENST00000555634 PLEKHG5O94827 1062 aa14.99□□□□□ -0.01
SHMT2-220ENST00000555634 AMPHP49418 695 aa14.99□□□□□ -0.01
SHMT2-220ENST00000555634 BLMP54132 1417 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-220ENST00000555634 ZBTB7CA1YPR0 619 aa14.98□□□□□ -0.01
SHMT2-220ENST00000555634 MTHFSP49914 203 aa14.98□□□□□ -0.01
SHMT2-220ENST00000555634 NUDCQ9Y266 331 aa14.98□□□□□ -0.01
SHMT2-220ENST00000555634 NWD2Q9ULI1 1742 aa14.97□□□□□ -0.01
SHMT2-220ENST00000555634 GCP02774 474 aa14.97□□□□□ -0.01
SHMT2-220ENST00000555634 RRS1Q15050 365 aaKnown RBP14.96□□□□□ -0.01
SHMT2-220ENST00000555634 CPDO75976 1380 aa14.96□□□□□ -0.02
SHMT2-220ENST00000555634 MAP3K19Q56UN5 1328 aa14.95□□□□□ -0.02
SHMT2-220ENST00000555634 POLKQ9UBT6 870 aa14.95□□□□□ -0.02
SHMT2-220ENST00000555634 COL3A1P02461 1466 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-220ENST00000555634 LMO7Q8WWI1 1683 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms