RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 Q3C1V9 767 aa3.52□□□□□ -1.85
PRPF39-208ENST00000554785 DXOO77932 396 aaKnown RBP3.52□□□□□ -1.85
PRPF39-208ENST00000554785 FDX1P10109 184 aa3.52□□□□□ -1.85
PRPF39-208ENST00000554785 PDE4DQ08499 809 aa3.52□□□□□ -1.85
PRPF39-208ENST00000554785 TRIM47Q96LD4 638 aa3.52□□□□□ -1.85
PRPF39-208ENST00000554785 PCDHB15Q9Y5E8 787 aa3.52□□□□□ -1.85
PRPF39-208ENST00000554785 PTCRAQ6ISU1 281 aaPredicted RBP3.51□□□□□ -1.85
PRPF39-208ENST00000554785 TBC1D2Q9BYX2 928 aa3.51□□□□□ -1.85
PRPF39-208ENST00000554785 C6orf229H3BNL8 230 aa3.5□□□□□ -1.85
PRPF39-208ENST00000554785 RNF225M0QZC1 329 aaPredicted RBP3.5□□□□□ -1.85
PRPF39-208ENST00000554785 RETREG3Q86VR2 466 aa3.5□□□□□ -1.85
PRPF39-208ENST00000554785 CCDC24Q8N4L8 307 aa3.5□□□□□ -1.85
PRPF39-208ENST00000554785 KRTAP4-5Q9BYR2 181 aa3.5□□□□□ -1.85
PRPF39-208ENST00000554785 ATP13A2Q9NQ11 1180 aa3.5□□□□□ -1.85
PRPF39-208ENST00000554785 SKOR1P84550 965 aa3.49□□□□□ -1.85
PRPF39-208ENST00000554785 TRIM32Q13049 653 aa3.49□□□□□ -1.85
PRPF39-208ENST00000554785 RSBN1LQ6PCB5 846 aaPredicted RBP3.49□□□□□ -1.85
PRPF39-208ENST00000554785 GPBP1L1Q9HC44 474 aaPredicted RBP3.49□□□□□ -1.85
PRPF39-208ENST00000554785 DNMT3AQ9Y6K1 912 aaPredicted RBP3.49□□□□□ -1.85
PRPF39-208ENST00000554785 RBAK-RBAKDNI3L0D1 243 aa3.49□□□□□ -1.85
PRPF39-208ENST00000554785 JUNDP17535 347 aa3.49□□□□□ -1.85
PRPF39-208ENST00000554785 IRF7Q92985 503 aa3.49□□□□□ -1.85
PRPF39-208ENST00000554785 LIMD1Q9UGP4 676 aa3.49□□□□□ -1.85
PRPF39-208ENST00000554785 CFAP99D6REC4 459 aa3.48□□□□□ -1.85
PRPF39-208ENST00000554785 HRCP23327 699 aa3.48□□□□□ -1.85
PRPF39-208ENST00000554785 WNT7BP56706 349 aa3.48□□□□□ -1.85
PRPF39-208ENST00000554785 MTMR2Q13614 643 aa3.48□□□□□ -1.85
PRPF39-208ENST00000554785 QPCTQ16769 361 aa3.48□□□□□ -1.85
PRPF39-208ENST00000554785 MYSM1Q5VVJ2 828 aa3.48□□□□□ -1.85
PRPF39-208ENST00000554785 FBXO31Q5XUX0 539 aaPredicted RBP3.48□□□□□ -1.85
PRPF39-208ENST00000554785 PRR7Q8TB68 274 aa3.48□□□□□ -1.85
PRPF39-208ENST00000554785 CABLES1Q8TDN4 633 aa3.48□□□□□ -1.85
PRPF39-208ENST00000554785 SPTLC1O15269 473 aa3.47□□□□□ -1.85
PRPF39-208ENST00000554785 SMPD1P17405 629 aa3.47□□□□□ -1.85
PRPF39-208ENST00000554785 CSPP1Q1MSJ5 1256 aa3.47□□□□□ -1.85
PRPF39-208ENST00000554785 RIC3Q7Z5B4 369 aa3.47□□□□□ -1.85
PRPF39-208ENST00000554785 MRGPRX2Q96LB1 330 aa3.47□□□□□ -1.85
PRPF39-208ENST00000554785 NUDT12Q9BQG2 462 aa3.47□□□□□ -1.85
PRPF39-208ENST00000554785 DACH1Q9UI36 760 aa3.47□□□□□ -1.85
PRPF39-208ENST00000554785 LAMC2Q13753 1193 aa3.47□□□□□ -1.85
PRPF39-208ENST00000554785 NXF1Q9UBU9 619 aaKnown RBP3.47□□□□□ -1.85
PRPF39-208ENST00000554785 J3QL48 77 aa3.46□□□□□ -1.86
PRPF39-208ENST00000554785 PER1O15534 1290 aaPredicted RBP3.46□□□□□ -1.86
PRPF39-208ENST00000554785 KRTAP4-11Q9BYQ6 195 aa3.46□□□□□ -1.86
PRPF39-208ENST00000554785 FAM117AQ9C073 453 aa3.46□□□□□ -1.86
PRPF39-208ENST00000554785 CCNYL3P0C7X3 344 aa3.46□□□□□ -1.86
PRPF39-208ENST00000554785 GJA5P36382 358 aa3.46□□□□□ -1.86
PRPF39-208ENST00000554785 RC3H1Q5TC82 1133 aaKnown RBP3.46□□□□□ -1.86
PRPF39-208ENST00000554785 EVA1BQ9NVM1 165 aa3.46□□□□□ -1.86
PRPF39-208ENST00000554785 POLR3EQ9NVU0 708 aa3.46□□□□□ -1.86
PRPF39-208ENST00000554785 COBLO75128 1261 aa3.45□□□□□ -1.86
PRPF39-208ENST00000554785 SH3BP2P78314 561 aa3.45□□□□□ -1.86
PRPF39-208ENST00000554785 PTPRNQ16849 979 aa3.45□□□□□ -1.86
PRPF39-208ENST00000554785 RTL5Q5HYW3 569 aaPredicted RBP3.45□□□□□ -1.86
PRPF39-208ENST00000554785 KDM4CQ9H3R0 1056 aa3.45□□□□□ -1.86
PRPF39-208ENST00000554785 MAP10Q9P2G4 905 aa3.45□□□□□ -1.86
PRPF39-208ENST00000554785 PLEKHG3A1L390 1219 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 SIAH2O43255 324 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 LILRB3O75022 631 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 LINC01559Q495D7 138 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 DESI1Q6ICB0 168 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 LYPD8Q6UX82 237 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 BAP1Q92560 729 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 UNC93B1Q9H1C4 597 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 SPDYE5A6NIY4 337 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 PRKCSHP14314 528 aaPredicted RBP3.44□□□□□ -1.86
PRPF39-208ENST00000554785 KCNH2Q12809 1159 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 DIXDC1Q155Q3 683 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 PROCA1Q8NCQ7 364 aaPredicted RBP3.44□□□□□ -1.86
PRPF39-208ENST00000554785 HPS1Q92902 700 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 ZBTB3Q9H5J0 574 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 F12P00748 615 aaPredicted RBP3.43□□□□□ -1.86
PRPF39-208ENST00000554785 SNRPBP14678 240 aaKnown RBP3.43□□□□□ -1.86
PRPF39-208ENST00000554785 TPRNQ4KMQ1 711 aa3.43□□□□□ -1.86
PRPF39-208ENST00000554785 PRPF38BQ5VTL8 546 aaKnown RBP3.43□□□□□ -1.86
PRPF39-208ENST00000554785 TSC1Q92574 1164 aa3.43□□□□□ -1.86
PRPF39-208ENST00000554785 NUTM2BA6NNL0 878 aaPredicted RBP3.43□□□□□ -1.86
PRPF39-208ENST00000554785 NUTM2EB1AL46 878 aaPredicted RBP3.43□□□□□ -1.86
PRPF39-208ENST00000554785 H3BM21 787 aa3.43□□□□□ -1.86
PRPF39-208ENST00000554785 CLK2P49760 499 aaKnown RBP3.43□□□□□ -1.86
PRPF39-208ENST00000554785 NUTM2DQ5VT03 806 aaPredicted RBP3.43□□□□□ -1.86
PRPF39-208ENST00000554785 NUTM2AQ8IVF1 878 aaPredicted RBP3.43□□□□□ -1.86
PRPF39-208ENST00000554785 ALDH1A1P00352 501 aa3.42□□□□□ -1.86
PRPF39-208ENST00000554785 CTHP32929 405 aa3.42□□□□□ -1.86
PRPF39-208ENST00000554785 CTDSPL2Q05D32 466 aa3.42□□□□□ -1.86
PRPF39-208ENST00000554785 MPNDQ8N594 471 aa3.42□□□□□ -1.86
PRPF39-208ENST00000554785 ZNF511Q8NB15 262 aa3.42□□□□□ -1.86
PRPF39-208ENST00000554785 EHBP1Q8NDI1 1231 aa3.42□□□□□ -1.86
PRPF39-208ENST00000554785 FOXJ1Q92949 421 aa3.42□□□□□ -1.86
PRPF39-208ENST00000554785 TUSC1Q2TAM9 212 aa3.41□□□□□ -1.86
PRPF39-208ENST00000554785 C4orf48Q5BLP8 95 aa3.41□□□□□ -1.86
PRPF39-208ENST00000554785 TLL2Q9Y6L7 1015 aa3.41□□□□□ -1.86
PRPF39-208ENST00000554785 WASF2Q9Y6W5 498 aa3.41□□□□□ -1.86
PRPF39-208ENST00000554785 GNL3Q9BVP2 549 aaKnown RBP eCLIP3.41□□□□□ -1.86
PRPF39-208ENST00000554785 CAPN5O15484 640 aaPredicted RBP3.4□□□□□ -1.86
PRPF39-208ENST00000554785 VSIG8P0DPA2 414 aa3.4□□□□□ -1.86
PRPF39-208ENST00000554785 SCARF1Q14162 830 aa3.4□□□□□ -1.86
PRPF39-208ENST00000554785 SKIV2LQ15477 1246 aaKnown RBP3.4□□□□□ -1.86
PRPF39-208ENST00000554785 LRRN4Q8WUT4 740 aa3.4□□□□□ -1.86
PRPF39-208ENST00000554785 RSPH6AQ9H0K4 717 aa3.4□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms