RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 RIC3Q7Z5B4 369 aa10.11□□□□□ -0.79
SCFD1-212ENST00000554486 SPSB2Q99619 263 aa10.11□□□□□ -0.79
SCFD1-212ENST00000554486 SALL2Q9Y467 1007 aaPredicted RBP10.11□□□□□ -0.79
SCFD1-212ENST00000554486 PCDHB15Q9Y5E8 787 aa10.11□□□□□ -0.79
SCFD1-212ENST00000554486 TLL1O43897 1013 aa10.1□□□□□ -0.79
SCFD1-212ENST00000554486 GUCA2AQ02747 115 aa10.1□□□□□ -0.79
SCFD1-212ENST00000554486 Q3C1V9 767 aa10.1□□□□□ -0.79
SCFD1-212ENST00000554486 SLC6A16Q9GZN6 736 aa10.1□□□□□ -0.79
SCFD1-212ENST00000554486 PCDHGC3Q9UN70 934 aa10.1□□□□□ -0.79
SCFD1-212ENST00000554486 SLC27A5Q9Y2P5 690 aa10.1□□□□□ -0.79
SCFD1-212ENST00000554486 PCMTD1Q96MG8 357 aaPredicted RBP10.09□□□□□ -0.79
SCFD1-212ENST00000554486 GJA5P36382 358 aa10.08□□□□□ -0.8
SCFD1-212ENST00000554486 TUSC1Q2TAM9 212 aa10.08□□□□□ -0.8
SCFD1-212ENST00000554486 UGGT2Q9NYU1 1516 aa10.07□□□□□ -0.8
SCFD1-212ENST00000554486 SHROOM2Q13796 1616 aa10.07□□□□□ -0.8
SCFD1-212ENST00000554486 V9GY48 417 aaPredicted RBP10.07□□□□□ -0.8
SCFD1-212ENST00000554486 CEP162Q5TB80 1403 aa10.07□□□□□ -0.8
SCFD1-212ENST00000554486 S1PR4O95977 384 aa10.06□□□□□ -0.8
SCFD1-212ENST00000554486 QPCTQ16769 361 aa10.06□□□□□ -0.8
SCFD1-212ENST00000554486 PRKD2Q9BZL6 878 aa10.06□□□□□ -0.8
SCFD1-212ENST00000554486 RNF223E7ERA6 249 aa10.05□□□□□ -0.8
SCFD1-212ENST00000554486 RANGAP1P46060 587 aaPredicted RBP10.05□□□□□ -0.8
SCFD1-212ENST00000554486 BRICD5Q6PL45 260 aa10.05□□□□□ -0.8
SCFD1-212ENST00000554486 ANKLE1Q8NAG6 615 aa10.05□□□□□ -0.8
SCFD1-212ENST00000554486 THAP11Q96EK4 314 aa10.05□□□□□ -0.8
SCFD1-212ENST00000554486 DISP1Q96F81 1524 aa10.04□□□□□ -0.8
SCFD1-212ENST00000554486 LILRB3O75022 631 aa10.04□□□□□ -0.8
SCFD1-212ENST00000554486 FDX1P10109 184 aa10.04□□□□□ -0.8
SCFD1-212ENST00000554486 CLIP1P30622 1438 aa10.04□□□□□ -0.8
SCFD1-212ENST00000554486 SAMD9Q5K651 1589 aa10.04□□□□□ -0.8
SCFD1-212ENST00000554486 ARHGAP35Q9NRY4 1499 aa10.04□□□□□ -0.8
SCFD1-212ENST00000554486 CSPP1Q1MSJ5 1256 aa10.03□□□□□ -0.8
SCFD1-212ENST00000554486 ERCC6L2Q5T890 1561 aa10.03□□□□□ -0.8
SCFD1-212ENST00000554486 PPP2R2DQ66LE6 453 aa10.03□□□□□ -0.8
SCFD1-212ENST00000554486 CABLES1Q8TDN4 633 aa10.03□□□□□ -0.8
SCFD1-212ENST00000554486 IRX2Q9BZI1 471 aaPredicted RBP10.03□□□□□ -0.8
SCFD1-212ENST00000554486 EFCAB5A4FU69 1503 aa10.02□□□□□ -0.8
SCFD1-212ENST00000554486 PRG4Q92954 1404 aaPredicted RBP10.02□□□□□ -0.81
SCFD1-212ENST00000554486 RTL5Q5HYW3 569 aaPredicted RBP10.02□□□□□ -0.81
SCFD1-212ENST00000554486 KIAA0556O60303 1618 aa10.02□□□□□ -0.81
SCFD1-212ENST00000554486 HRCP23327 699 aa10.01□□□□□ -0.81
SCFD1-212ENST00000554486 ARAP1Q96P48 1450 aa10□□□□□ -0.81
SCFD1-212ENST00000554486 PPEF1O14829 653 aaPredicted RBP10□□□□□ -0.81
SCFD1-212ENST00000554486 SLC19A1P41440 591 aa10□□□□□ -0.81
SCFD1-212ENST00000554486 MSS51Q4VC12 460 aa10□□□□□ -0.81
SCFD1-212ENST00000554486 RNF19BQ6ZMZ0 732 aa10□□□□□ -0.81
SCFD1-212ENST00000554486 SYMPKQ92797 1274 aaKnown RBP10□□□□□ -0.81
SCFD1-212ENST00000554486 USB1Q9BQ65 265 aaKnown RBP10□□□□□ -0.81
SCFD1-212ENST00000554486 FHOD3Q2V2M9 1422 aa9.99□□□□□ -0.81
SCFD1-212ENST00000554486 CARMIL2Q6F5E8 1435 aa9.99□□□□□ -0.81
SCFD1-212ENST00000554486 RFC5P40937 340 aa9.99□□□□□ -0.81
SCFD1-212ENST00000554486 PRPF38BQ5VTL8 546 aaKnown RBP9.99□□□□□ -0.81
SCFD1-212ENST00000554486 FAM160A2Q8N612 972 aaPredicted RBP9.99□□□□□ -0.81
SCFD1-212ENST00000554486 LAPTM4AQ15012 233 aa9.96□□□□□ -0.82
SCFD1-212ENST00000554486 ARHGEF11O15085 1522 aa9.96□□□□□ -0.82
SCFD1-212ENST00000554486 ZBTB3Q9H5J0 574 aa9.95□□□□□ -0.82
SCFD1-212ENST00000554486 ATP1B4Q9UN42 357 aaPredicted RBP9.95□□□□□ -0.82
SCFD1-212ENST00000554486 TIMELESSQ9UNS1 1208 aa9.95□□□□□ -0.82
SCFD1-212ENST00000554486 RIMBP3CA6NJZ7 1639 aa9.95□□□□□ -0.82
SCFD1-212ENST00000554486 RIMBP3BA6NNM3 1639 aa9.95□□□□□ -0.82
SCFD1-212ENST00000554486 RIMBP3Q9UFD9 1639 aa9.95□□□□□ -0.82
SCFD1-212ENST00000554486 PTPRGP23470 1445 aa9.94□□□□□ -0.82
SCFD1-212ENST00000554486 CFAP99D6REC4 459 aa9.94□□□□□ -0.82
SCFD1-212ENST00000554486 C6orf229H3BNL8 230 aa9.94□□□□□ -0.82
SCFD1-212ENST00000554486 MTMR2Q13614 643 aa9.94□□□□□ -0.82
SCFD1-212ENST00000554486 FCF1Q9Y324 198 aaKnown RBP9.94□□□□□ -0.82
SCFD1-212ENST00000554486 ZBTB24O43167 697 aaPredicted RBP9.93□□□□□ -0.82
SCFD1-212ENST00000554486 MMP16P51512 607 aa9.93□□□□□ -0.82
SCFD1-212ENST00000554486 SPRYD7Q5W111 196 aa9.93□□□□□ -0.82
SCFD1-212ENST00000554486 RETREG3Q86VR2 466 aa9.93□□□□□ -0.82
SCFD1-212ENST00000554486 FMN1Q68DA7 1419 aa9.92□□□□□ -0.82
SCFD1-212ENST00000554486 VPS8Q8N3P4 1428 aa9.92□□□□□ -0.82
SCFD1-212ENST00000554486 TTBK1Q5TCY1 1321 aaPredicted RBP9.92□□□□□ -0.82
SCFD1-212ENST00000554486 SPDYE5A6NIY4 337 aa9.92□□□□□ -0.82
SCFD1-212ENST00000554486 NUTM2BA6NNL0 878 aaPredicted RBP9.92□□□□□ -0.82
SCFD1-212ENST00000554486 NUTM2EB1AL46 878 aaPredicted RBP9.92□□□□□ -0.82
SCFD1-212ENST00000554486 CD2BP2O95400 341 aaKnown RBP9.92□□□□□ -0.82
SCFD1-212ENST00000554486 RPIAP49247 311 aa9.92□□□□□ -0.82
SCFD1-212ENST00000554486 NUTM2DQ5VT03 806 aaPredicted RBP9.92□□□□□ -0.82
SCFD1-212ENST00000554486 ZNF598Q86UK7 904 aaKnown RBP9.92□□□□□ -0.82
SCFD1-212ENST00000554486 NUTM2AQ8IVF1 878 aaPredicted RBP9.92□□□□□ -0.82
SCFD1-212ENST00000554486 PRDM9Q9NQV7 894 aa9.92□□□□□ -0.82
SCFD1-212ENST00000554486 GFRA3O60609 400 aa9.91□□□□□ -0.82
SCFD1-212ENST00000554486 LIAT1Q6ZQX7 453 aa9.91□□□□□ -0.82
SCFD1-212ENST00000554486 SNRKQ9NRH2 765 aa9.91□□□□□ -0.82
SCFD1-212ENST00000554486 ABCA8O94911 1581 aa9.91□□□□□ -0.82
SCFD1-212ENST00000554486 PCF11O94913 1555 aaKnown RBP9.9□□□□□ -0.82
SCFD1-212ENST00000554486 MCM6Q14566 821 aa9.9□□□□□ -0.82
SCFD1-212ENST00000554486 PLB1Q6P1J6 1458 aa9.9□□□□□ -0.83
SCFD1-212ENST00000554486 DXOO77932 396 aaKnown RBP9.89□□□□□ -0.83
SCFD1-212ENST00000554486 CTDSPL2Q05D32 466 aa9.89□□□□□ -0.83
SCFD1-212ENST00000554486 TMEM259Q4ZIN3 620 aa9.89□□□□□ -0.83
SCFD1-212ENST00000554486 PLA2G2CQ5R387 149 aa9.89□□□□□ -0.83
SCFD1-212ENST00000554486 BANK1Q8NDB2 785 aa9.89□□□□□ -0.83
SCFD1-212ENST00000554486 PRR7Q8TB68 274 aa9.89□□□□□ -0.83
SCFD1-212ENST00000554486 CASKIN1Q8WXD9 1431 aa9.89□□□□□ -0.83
SCFD1-212ENST00000554486 RAPGEF6Q8TEU7 1601 aa9.89□□□□□ -0.83
SCFD1-212ENST00000554486 JUNDP17535 347 aa9.88□□□□□ -0.83
SCFD1-212ENST00000554486 ZNF697Q5TEC3 545 aa9.88□□□□□ -0.83
SCFD1-212ENST00000554486 EMID1Q96A84 441 aaPredicted RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 142.9 ms