RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 RUNDC1Q96C34 613 aa15.29■□□□□ 0.04
SHMT2-212ENST00000554467 RBM33Q96EV2 1170 aaKnown RBP15.29■□□□□ 0.04
SHMT2-212ENST00000554467 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-212ENST00000554467 THEMISQ8N1K5 641 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-212ENST00000554467 CCDC61Q9Y6R9 512 aa15.28■□□□□ 0.04
SHMT2-212ENST00000554467 SOX12O15370 315 aa15.27■□□□□ 0.03
SHMT2-212ENST00000554467 CRBNQ96SW2 442 aa15.27■□□□□ 0.03
SHMT2-212ENST00000554467 EMILIN1Q9Y6C2 1016 aa15.27■□□□□ 0.03
SHMT2-212ENST00000554467 PMFBP1Q8TBY8 1022 aa15.26■□□□□ 0.03
SHMT2-212ENST00000554467 BCAR3O75815 825 aa15.25■□□□□ 0.03
SHMT2-212ENST00000554467 RRS1Q15050 365 aaKnown RBP15.25■□□□□ 0.03
SHMT2-212ENST00000554467 FAM135BQ49AJ0 1406 aa15.25■□□□□ 0.03
SHMT2-212ENST00000554467 UBE2Q2Q8WVN8 375 aa15.25■□□□□ 0.03
SHMT2-212ENST00000554467 TECPR2O15040 1411 aa15.25■□□□□ 0.03
SHMT2-212ENST00000554467 POLKQ9UBT6 870 aa15.24■□□□□ 0.03
SHMT2-212ENST00000554467 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-212ENST00000554467 E9PSI1 815 aa15.23■□□□□ 0.03
SHMT2-212ENST00000554467 CPS1P31327 1500 aa15.23■□□□□ 0.03
SHMT2-212ENST00000554467 RIMS1Q86UR5 1692 aaKnown RBP15.23■□□□□ 0.03
SHMT2-212ENST00000554467 ATP7BP35670 1465 aa15.23■□□□□ 0.03
SHMT2-212ENST00000554467 DIAPH1O60610 1272 aaKnown RBP15.23■□□□□ 0.03
SHMT2-212ENST00000554467 HMOX1P09601 288 aa15.23■□□□□ 0.03
SHMT2-212ENST00000554467 TRMT2AQ8IZ69 625 aaKnown RBP15.23■□□□□ 0.03
SHMT2-212ENST00000554467 KCNA6P17658 529 aa15.22■□□□□ 0.03
SHMT2-212ENST00000554467 CPSF1Q10570 1443 aaKnown RBP15.22■□□□□ 0.03
SHMT2-212ENST00000554467 ACEP12821 1306 aa15.22■□□□□ 0.03
SHMT2-212ENST00000554467 SIRT1Q96EB6 747 aa15.21■□□□□ 0.03
SHMT2-212ENST00000554467 KIF20BQ96Q89 1820 aa15.21■□□□□ 0.03
SHMT2-212ENST00000554467 KNDC1Q76NI1 1749 aa15.21■□□□□ 0.03
SHMT2-212ENST00000554467 SKAP1Q86WV1 359 aa15.21■□□□□ 0.02
SHMT2-212ENST00000554467 COG3Q96JB2 828 aa15.21■□□□□ 0.02
SHMT2-212ENST00000554467 TBX22Q9Y458 520 aa15.21■□□□□ 0.02
SHMT2-212ENST00000554467 MED14O60244 1454 aa15.2■□□□□ 0.02
SHMT2-212ENST00000554467 BCL2L13Q9BXK5 485 aa15.2■□□□□ 0.02
SHMT2-212ENST00000554467 EDC4Q6P2E9 1401 aaKnown RBP15.2■□□□□ 0.02
SHMT2-212ENST00000554467 COL3A1P02461 1466 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-212ENST00000554467 ARHGAP23Q9P227 1491 aa15.2■□□□□ 0.02
SHMT2-212ENST00000554467 SLIT1O75093 1534 aa15.2■□□□□ 0.02
SHMT2-212ENST00000554467 NKTRP30414 1462 aaKnown RBP15.19■□□□□ 0.02
SHMT2-212ENST00000554467 IQSEC2Q5JU85 1478 aa15.19■□□□□ 0.02
SHMT2-212ENST00000554467 TSR2Q969E8 191 aaKnown RBP15.19■□□□□ 0.02
SHMT2-212ENST00000554467 PLEKHF1Q96S99 279 aa15.19■□□□□ 0.02
SHMT2-212ENST00000554467 DNAJC5Q9H3Z4 198 aa15.19■□□□□ 0.02
SHMT2-212ENST00000554467 MAPK8IP3Q9UPT6 1336 aa15.19■□□□□ 0.02
SHMT2-212ENST00000554467 ANKRD26Q9UPS8 1709 aa15.19■□□□□ 0.02
SHMT2-212ENST00000554467 CDC42BPGQ6DT37 1551 aa15.17■□□□□ 0.02
SHMT2-212ENST00000554467 MAP2P11137 1827 aaKnown RBP15.17■□□□□ 0.02
SHMT2-212ENST00000554467 PRKAR2BP31323 418 aa15.17■□□□□ 0.02
SHMT2-212ENST00000554467 TMPOP42166 694 aaKnown RBP15.17■□□□□ 0.02
SHMT2-212ENST00000554467 FRAT1Q92837 279 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-212ENST00000554467 CEP170BQ9Y4F5 1589 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-212ENST00000554467 NUTM2GQ5VZR2 741 aa15.16■□□□□ 0.02
SHMT2-212ENST00000554467 NPM2Q86SE8 214 aaKnown RBP15.16■□□□□ 0.02
SHMT2-212ENST00000554467 TTC21BQ7Z4L5 1316 aa15.16■□□□□ 0.02
SHMT2-212ENST00000554467 RIPK4P57078 832 aa15.16■□□□□ 0.02
SHMT2-212ENST00000554467 NGDNQ8NEJ9 315 aaKnown RBP15.16■□□□□ 0.02
SHMT2-212ENST00000554467 PHACTR3Q96KR7 559 aa15.15■□□□□ 0.02
SHMT2-212ENST00000554467 PHF23Q9BUL5 403 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-212ENST00000554467 IPO9Q96P70 1041 aaKnown RBP15.15■□□□□ 0.02
SHMT2-212ENST00000554467 TRIM35Q9UPQ4 493 aa15.15■□□□□ 0.02
SHMT2-212ENST00000554467 ANKLE2Q86XL3 938 aa15.15■□□□□ 0.02
SHMT2-212ENST00000554467 ZNF692Q9BU19 519 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-212ENST00000554467 PNPLA6Q8IY17 1366 aa15.15■□□□□ 0.02
SHMT2-212ENST00000554467 CANXP27824 592 aaKnown RBP15.14■□□□□ 0.01
SHMT2-212ENST00000554467 THUMPD2Q9BTF0 503 aaKnown RBP15.14■□□□□ 0.01
SHMT2-212ENST00000554467 TNNQ9UQP3 1299 aa15.14■□□□□ 0.01
SHMT2-212ENST00000554467 PLEKHG5O94827 1062 aa15.14■□□□□ 0.01
SHMT2-212ENST00000554467 NGEFQ8N5V2 710 aa15.13■□□□□ 0.01
SHMT2-212ENST00000554467 WDR63Q8IWG1 891 aa15.13■□□□□ 0.01
SHMT2-212ENST00000554467 PANK1Q8TE04 598 aa15.13■□□□□ 0.01
SHMT2-212ENST00000554467 ITSN1Q15811 1721 aa15.13■□□□□ 0.01
SHMT2-212ENST00000554467 RSPH6AQ9H0K4 717 aa15.13■□□□□ 0.01
SHMT2-212ENST00000554467 LAS1LQ9Y4W2 734 aaKnown RBP15.13■□□□□ 0.01
SHMT2-212ENST00000554467 RGPD8O14715 1765 aaPredicted RBP15.12■□□□□ 0.01
SHMT2-212ENST00000554467 PLEKHG3A1L390 1219 aa15.12■□□□□ 0.01
SHMT2-212ENST00000554467 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.12■□□□□ 0.01
SHMT2-212ENST00000554467 MON2Q7Z3U7 1717 aa15.11■□□□□ 0.01
SHMT2-212ENST00000554467 IL13P35225 146 aa15.11■□□□□ 0.01
SHMT2-212ENST00000554467 CCDC27Q2M243 656 aa15.11■□□□□ 0.01
SHMT2-212ENST00000554467 CLUAP1Q96AJ1 413 aa15.11■□□□□ 0.01
SHMT2-212ENST00000554467 USP6P35125 1406 aa15.11■□□□□ 0.01
SHMT2-212ENST00000554467 RARSP54136 660 aaKnown RBP15.1■□□□□ 0.01
SHMT2-212ENST00000554467 AEBP1Q8IUX7 1158 aa15.1■□□□□ 0.01
SHMT2-212ENST00000554467 LRRC7Q96NW7 1537 aa15.1■□□□□ 0.01
SHMT2-212ENST00000554467 AKAP12Q02952 1782 aa15.1■□□□□ 0.01
SHMT2-212ENST00000554467 EXOSC9Q06265 439 aaKnown RBP15.1■□□□□ 0.01
SHMT2-212ENST00000554467 HSP90AB2PQ58FF8 381 aa15.1■□□□□ 0.01
SHMT2-212ENST00000554467 RTL5Q5HYW3 569 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-212ENST00000554467 C14orf37Q86TY3 774 aa15.1■□□□□ 0.01
SHMT2-212ENST00000554467 FCHSD2O94868 740 aa15.1■□□□□ 0.01
SHMT2-212ENST00000554467 COG6Q9Y2V7 657 aa15.1■□□□□ 0.01
SHMT2-212ENST00000554467 DIP2AQ14689 1571 aa15.09■□□□□ 0.01
SHMT2-212ENST00000554467 ADGRB2O60241 1585 aa15.09■□□□□ 0.01
SHMT2-212ENST00000554467 PTCH1Q13635 1447 aa15.09■□□□□ 0.01
SHMT2-212ENST00000554467 MYH16Q9H6N6 1097 aa15.09■□□□□ 0.01
SHMT2-212ENST00000554467 NEFMP07197 916 aa15.07■□□□□ 0
SHMT2-212ENST00000554467 ZBTB47Q9UFB7 747 aaPredicted RBP15.07■□□□□ 0
SHMT2-212ENST00000554467 FAM83GA6ND36 823 aa15.07■□□□□ 0
SHMT2-212ENST00000554467 DCTN1Q14203 1278 aa15.07■□□□□ 0
SHMT2-212ENST00000554467 EIF4A2Q14240 407 aaKnown RBP15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms