RNA–Protein interactions for RNA: ENST00000551355.5

NEK3-203, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 727 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-203ENST00000551355 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.07□□□□□ -0.16
NEK3-203ENST00000551355 SCAF1Q9H7N4 1312 aaKnown RBP14.07□□□□□ -0.16
NEK3-203ENST00000551355 KIF1AQ12756 1690 aa14.07□□□□□ -0.16
NEK3-203ENST00000551355 IQSEC2Q5JU85 1478 aa14.06□□□□□ -0.16
NEK3-203ENST00000551355 COG3Q96JB2 828 aa14.06□□□□□ -0.16
NEK3-203ENST00000551355 AKAP12Q02952 1782 aa14.05□□□□□ -0.16
NEK3-203ENST00000551355 FOXO3O43524 673 aa14.05□□□□□ -0.16
NEK3-203ENST00000551355 TOM1O60784 492 aa14.05□□□□□ -0.16
NEK3-203ENST00000551355 XIRP1Q702N8 1843 aaKnown RBP14.05□□□□□ -0.16
NEK3-203ENST00000551355 MON2Q7Z3U7 1717 aa14.04□□□□□ -0.16
NEK3-203ENST00000551355 CNGB1Q14028 1251 aaPredicted RBP14.04□□□□□ -0.16
NEK3-203ENST00000551355 BRINP3Q76B58 766 aa14.04□□□□□ -0.16
NEK3-203ENST00000551355 KRT28Q7Z3Y7 464 aa14.04□□□□□ -0.16
NEK3-203ENST00000551355 GGNBP2Q9H3C7 697 aa14.04□□□□□ -0.16
NEK3-203ENST00000551355 USP31Q70CQ4 1352 aa14.04□□□□□ -0.16
NEK3-203ENST00000551355 PPP2R1AP30153 589 aa14.03□□□□□ -0.16
NEK3-203ENST00000551355 NME9Q86XW9 330 aa14.03□□□□□ -0.16
NEK3-203ENST00000551355 SBNO1A3KN83 1393 aa14.03□□□□□ -0.16
NEK3-203ENST00000551355 MSH5O43196 834 aa14.02□□□□□ -0.17
NEK3-203ENST00000551355 PAK3O75914 559 aaPredicted RBP14.02□□□□□ -0.17
NEK3-203ENST00000551355 ABTB2Q8N961 1025 aa14.02□□□□□ -0.17
NEK3-203ENST00000551355 NRKQ7Z2Y5 1582 aa14.01□□□□□ -0.17
NEK3-203ENST00000551355 AATKQ6ZMQ8 1374 aa14.01□□□□□ -0.17
NEK3-203ENST00000551355 MRS2Q9HD23 443 aa14.01□□□□□ -0.17
NEK3-203ENST00000551355 RGPD8O14715 1765 aaPredicted RBP14.01□□□□□ -0.17
NEK3-203ENST00000551355 NLRP6P59044 892 aa14□□□□□ -0.17
NEK3-203ENST00000551355 OVOS2A0A0J9YW53 1432 aa13.99□□□□□ -0.17
NEK3-203ENST00000551355 OVOS2Q6IE36 1432 aa13.99□□□□□ -0.17
NEK3-203ENST00000551355 CERKQ8TCT0 537 aa13.99□□□□□ -0.17
NEK3-203ENST00000551355 CFAP53Q96M91 514 aa13.99□□□□□ -0.17
NEK3-203ENST00000551355 ARHGEF10O15013 1369 aa13.98□□□□□ -0.17
NEK3-203ENST00000551355 SOS2Q07890 1332 aaPredicted RBP13.98□□□□□ -0.17
NEK3-203ENST00000551355 KCNH5Q8NCM2 988 aa13.98□□□□□ -0.17
NEK3-203ENST00000551355 TNNT2P45379 298 aaPredicted RBP13.97□□□□□ -0.17
NEK3-203ENST00000551355 KIF20BQ96Q89 1820 aa13.97□□□□□ -0.17
NEK3-203ENST00000551355 SPATA31A3Q5VYP0 1347 aa13.96□□□□□ -0.17
NEK3-203ENST00000551355 PXDNQ92626 1479 aa13.96□□□□□ -0.17
NEK3-203ENST00000551355 MTHFSP49914 203 aa13.96□□□□□ -0.17
NEK3-203ENST00000551355 TNS3Q68CZ2 1445 aa13.96□□□□□ -0.18
NEK3-203ENST00000551355 ANKRD26Q9UPS8 1709 aa13.95□□□□□ -0.18
NEK3-203ENST00000551355 UBAP1LF5GYI3 381 aa13.95□□□□□ -0.18
NEK3-203ENST00000551355 XPCQ01831 940 aaPredicted RBP13.95□□□□□ -0.18
NEK3-203ENST00000551355 ZRANB1Q9UGI0 708 aa13.95□□□□□ -0.18
NEK3-203ENST00000551355 KIF24Q5T7B8 1368 aa13.95□□□□□ -0.18
NEK3-203ENST00000551355 LMOD2Q6P5Q4 547 aa13.94□□□□□ -0.18
NEK3-203ENST00000551355 LRRC59Q96AG4 307 aaKnown RBP13.94□□□□□ -0.18
NEK3-203ENST00000551355 POLKQ9UBT6 870 aa13.94□□□□□ -0.18
NEK3-203ENST00000551355 INSRP06213 1382 aa13.94□□□□□ -0.18
NEK3-203ENST00000551355 USP19O94966 1318 aa13.93□□□□□ -0.18
NEK3-203ENST00000551355 SMG6Q86US8 1419 aaKnown RBP13.93□□□□□ -0.18
NEK3-203ENST00000551355 PNISRQ8TF01 805 aaKnown RBP13.93□□□□□ -0.18
NEK3-203ENST00000551355 USP54Q70EL1 1684 aa13.93□□□□□ -0.18
NEK3-203ENST00000551355 PIK3C2AO00443 1686 aa13.92□□□□□ -0.18
NEK3-203ENST00000551355 CCDC184Q52MB2 194 aa13.92□□□□□ -0.18
NEK3-203ENST00000551355 DDX17Q92841 729 aaKnown RBP13.92□□□□□ -0.18
NEK3-203ENST00000551355 NUDCQ9Y266 331 aa13.92□□□□□ -0.18
NEK3-203ENST00000551355 PNPLA6Q8IY17 1366 aa13.92□□□□□ -0.18
NEK3-203ENST00000551355 TRPM3Q9HCF6 1732 aaPredicted RBP13.92□□□□□ -0.18
NEK3-203ENST00000551355 AHDC1Q5TGY3 1603 aaPredicted RBP13.91□□□□□ -0.18
NEK3-203ENST00000551355 GCP02774 474 aa13.91□□□□□ -0.18
NEK3-203ENST00000551355 WDR43Q15061 677 aaKnown RBP eCLIP13.91□□□□□ -0.18
NEK3-203ENST00000551355 NUTM2GQ5VZR2 741 aa13.91□□□□□ -0.18
NEK3-203ENST00000551355 NHSL1Q5SYE7 1610 aa13.9□□□□□ -0.19
NEK3-203ENST00000551355 ROBO1Q9Y6N7 1651 aa13.89□□□□□ -0.19
NEK3-203ENST00000551355 CDK12Q9NYV4 1490 aaPredicted RBP13.89□□□□□ -0.19
NEK3-203ENST00000551355 RTL1A6NKG5 1358 aa13.89□□□□□ -0.19
NEK3-203ENST00000551355 PPM1GO15355 546 aaPredicted RBP13.89□□□□□ -0.19
NEK3-203ENST00000551355 AMPHP49418 695 aa13.89□□□□□ -0.19
NEK3-203ENST00000551355 FAM9BQ8IZU0 186 aa13.89□□□□□ -0.19
NEK3-203ENST00000551355 SLIT3O75094 1523 aa13.89□□□□□ -0.19
NEK3-203ENST00000551355 FLT4P35916 1363 aa13.88□□□□□ -0.19
NEK3-203ENST00000551355 DIAPH1O60610 1272 aaKnown RBP13.88□□□□□ -0.19
NEK3-203ENST00000551355 PIP4K2BP78356 416 aa13.88□□□□□ -0.19
NEK3-203ENST00000551355 RRS1Q15050 365 aaKnown RBP13.88□□□□□ -0.19
NEK3-203ENST00000551355 EMILIN1Q9Y6C2 1016 aa13.88□□□□□ -0.19
NEK3-203ENST00000551355 ALS2Q96Q42 1657 aa13.88□□□□□ -0.19
NEK3-203ENST00000551355 MAP3K19Q56UN5 1328 aa13.88□□□□□ -0.19
NEK3-203ENST00000551355 PNNQ9H307 717 aaKnown RBP13.87□□□□□ -0.19
NEK3-203ENST00000551355 MED1Q15648 1581 aaPredicted RBP13.87□□□□□ -0.19
NEK3-203ENST00000551355 SOX12O15370 315 aa13.86□□□□□ -0.19
NEK3-203ENST00000551355 ARHGEF25Q86VW2 580 aa13.86□□□□□ -0.19
NEK3-203ENST00000551355 NFAT5O94916 1531 aa13.85□□□□□ -0.19
NEK3-203ENST00000551355 FBLN1P23142 703 aa13.85□□□□□ -0.19
NEK3-203ENST00000551355 IP6K1Q92551 441 aa13.85□□□□□ -0.19
NEK3-203ENST00000551355 CPDO75976 1380 aa13.84□□□□□ -0.19
NEK3-203ENST00000551355 HOXC9P31274 260 aa13.84□□□□□ -0.19
NEK3-203ENST00000551355 HAP1P54257 671 aaPredicted RBP13.84□□□□□ -0.19
NEK3-203ENST00000551355 PIAS4Q8N2W9 510 aaPredicted RBP13.84□□□□□ -0.19
NEK3-203ENST00000551355 COL3A1P02461 1466 aaPredicted RBP13.83□□□□□ -0.2
NEK3-203ENST00000551355 IL13P35225 146 aa13.83□□□□□ -0.2
NEK3-203ENST00000551355 ADAMTS8Q9UP79 889 aa13.83□□□□□ -0.2
NEK3-203ENST00000551355 BLMP54132 1417 aaPredicted RBP13.82□□□□□ -0.2
NEK3-203ENST00000551355 ABCC6O95255 1503 aa13.82□□□□□ -0.2
NEK3-203ENST00000551355 U2AF1L5P0DN76 240 aaPredicted RBP13.82□□□□□ -0.2
NEK3-203ENST00000551355 ADRA2BP18089 450 aa13.82□□□□□ -0.2
NEK3-203ENST00000551355 U2AF1Q01081 240 aaKnown RBP eCLIP13.82□□□□□ -0.2
NEK3-203ENST00000551355 HSP90AB2PQ58FF8 381 aa13.82□□□□□ -0.2
NEK3-203ENST00000551355 NGEFQ8N5V2 710 aa13.82□□□□□ -0.2
NEK3-203ENST00000551355 MARF1Q9Y4F3 1742 aaKnown RBP13.81□□□□□ -0.2
NEK3-203ENST00000551355 U2SURPO15042 1029 aaKnown RBP13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms