RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 TERF2IPQ9NYB0 399 aa22.57■■□□□ 1.2
CHMP1A-209ENST00000550872 NINLQ9Y2I6 1382 aa22.56■■□□□ 1.2
CHMP1A-209ENST00000550872 USP6P35125 1406 aa22.56■■□□□ 1.2
CHMP1A-209ENST00000550872 ARHGEF10O15013 1369 aa22.55■■□□□ 1.2
CHMP1A-209ENST00000550872 KTN1Q86UP2 1357 aaKnown RBP22.55■■□□□ 1.2
CHMP1A-209ENST00000550872 TRPM3Q9HCF6 1732 aaPredicted RBP22.55■■□□□ 1.2
CHMP1A-209ENST00000550872 PLEKHG5O94827 1062 aa22.55■■□□□ 1.2
CHMP1A-209ENST00000550872 CPSF1Q10570 1443 aaKnown RBP22.55■■□□□ 1.2
CHMP1A-209ENST00000550872 BRD4O60885 1362 aaPredicted RBP22.54■■□□□ 1.2
CHMP1A-209ENST00000550872 C11orf95C9JLR9 678 aaPredicted RBP22.54■■□□□ 1.2
CHMP1A-209ENST00000550872 NUTM2GQ5VZR2 741 aa22.52■■□□□ 1.2
CHMP1A-209ENST00000550872 ABTB2Q8N961 1025 aa22.52■■□□□ 1.2
CHMP1A-209ENST00000550872 CD163L1Q9NR16 1453 aa22.52■■□□□ 1.2
CHMP1A-209ENST00000550872 AKAP12Q02952 1782 aa22.51■■□□□ 1.19
CHMP1A-209ENST00000550872 HAP1P54257 671 aaPredicted RBP22.51■■□□□ 1.19
CHMP1A-209ENST00000550872 CABLES1Q8TDN4 633 aa22.51■■□□□ 1.19
CHMP1A-209ENST00000550872 TTC21BQ7Z4L5 1316 aa22.51■■□□□ 1.19
CHMP1A-209ENST00000550872 MEX3CQ5U5Q3 659 aaKnown RBP22.5■■□□□ 1.19
CHMP1A-209ENST00000550872 A0A1W2PP64 1363 aa22.5■■□□□ 1.19
CHMP1A-209ENST00000550872 SSH2Q76I76 1423 aa22.49■■□□□ 1.19
CHMP1A-209ENST00000550872 ALS2Q96Q42 1657 aa22.49■■□□□ 1.19
CHMP1A-209ENST00000550872 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.49■■□□□ 1.19
CHMP1A-209ENST00000550872 COL22A1Q8NFW1 1626 aaPredicted RBP22.49■■□□□ 1.19
CHMP1A-209ENST00000550872 ADAMTS2O95450 1211 aa22.48■■□□□ 1.19
CHMP1A-209ENST00000550872 LRP6O75581 1613 aa22.48■■□□□ 1.19
CHMP1A-209ENST00000550872 ANKRD36BQ8N2N9 1353 aa22.48■■□□□ 1.19
CHMP1A-209ENST00000550872 NLRP13Q86W25 1043 aa22.47■■□□□ 1.19
CHMP1A-209ENST00000550872 TTC21AQ8NDW8 1320 aa22.47■■□□□ 1.19
CHMP1A-209ENST00000550872 NLRP6P59044 892 aa22.46■■□□□ 1.19
CHMP1A-209ENST00000550872 KIF7Q2M1P5 1343 aa22.46■■□□□ 1.19
CHMP1A-209ENST00000550872 MON2Q7Z3U7 1717 aa22.45■■□□□ 1.19
CHMP1A-209ENST00000550872 EDC4Q6P2E9 1401 aaKnown RBP22.45■■□□□ 1.18
CHMP1A-209ENST00000550872 MYOM1P52179 1685 aa22.43■■□□□ 1.18
CHMP1A-209ENST00000550872 ZNF772Q68DY9 489 aaPredicted RBP22.43■■□□□ 1.18
CHMP1A-209ENST00000550872 NME9Q86XW9 330 aa22.42■■□□□ 1.18
CHMP1A-209ENST00000550872 C8orf37Q96NL8 207 aa22.41■■□□□ 1.18
CHMP1A-209ENST00000550872 NRKQ7Z2Y5 1582 aa22.41■■□□□ 1.18
CHMP1A-209ENST00000550872 CCDC7Q96M83 1385 aa22.4■■□□□ 1.18
CHMP1A-209ENST00000550872 NGLY1Q96IV0 654 aa22.4■■□□□ 1.18
CHMP1A-209ENST00000550872 CARD14Q9BXL6 1004 aa22.4■■□□□ 1.18
CHMP1A-209ENST00000550872 USP19O94966 1318 aa22.39■■□□□ 1.18
CHMP1A-209ENST00000550872 WASHC2AQ641Q2 1341 aa22.39■■□□□ 1.18
CHMP1A-209ENST00000550872 PANK3Q9H999 370 aa22.39■■□□□ 1.17
CHMP1A-209ENST00000550872 ZRANB1Q9UGI0 708 aa22.39■■□□□ 1.17
CHMP1A-209ENST00000550872 PIK3C2AO00443 1686 aa22.38■■□□□ 1.17
CHMP1A-209ENST00000550872 GCP02774 474 aa22.37■■□□□ 1.17
CHMP1A-209ENST00000550872 ABCA3Q99758 1704 aa22.37■■□□□ 1.17
CHMP1A-209ENST00000550872 ZC3H6P61129 1189 aaKnown RBP22.36■■□□□ 1.17
CHMP1A-209ENST00000550872 USP31Q70CQ4 1352 aa22.36■■□□□ 1.17
CHMP1A-209ENST00000550872 NSD3Q9BZ95 1437 aa22.35■■□□□ 1.17
CHMP1A-209ENST00000550872 CRYBG1Q9Y4K1 1723 aa22.34■■□□□ 1.17
CHMP1A-209ENST00000550872 AFF2P51816 1311 aa22.34■■□□□ 1.17
CHMP1A-209ENST00000550872 FAM83GA6ND36 823 aa22.33■■□□□ 1.17
CHMP1A-209ENST00000550872 FYB1O15117 783 aa22.33■■□□□ 1.17
CHMP1A-209ENST00000550872 SOX12O15370 315 aa22.33■■□□□ 1.17
CHMP1A-209ENST00000550872 KCNH5Q8NCM2 988 aa22.33■■□□□ 1.17
CHMP1A-209ENST00000550872 COG3Q96JB2 828 aa22.33■■□□□ 1.17
CHMP1A-209ENST00000550872 PRDM11Q9NQV5 511 aa22.33■■□□□ 1.17
CHMP1A-209ENST00000550872 MARF1Q9Y4F3 1742 aaKnown RBP22.33■■□□□ 1.17
CHMP1A-209ENST00000550872 PHRF1Q9P1Y6 1649 aaKnown RBP22.32■■□□□ 1.16
CHMP1A-209ENST00000550872 GGNBP2Q9H3C7 697 aa22.32■■□□□ 1.16
CHMP1A-209ENST00000550872 KIAA0232Q92628 1395 aa22.31■■□□□ 1.16
CHMP1A-209ENST00000550872 ZBTB7CA1YPR0 619 aa22.31■■□□□ 1.16
CHMP1A-209ENST00000550872 FNBP4Q8N3X1 1017 aaPredicted RBP22.31■■□□□ 1.16
CHMP1A-209ENST00000550872 CGNL1Q0VF96 1302 aa22.31■■□□□ 1.16
CHMP1A-209ENST00000550872 CHRNA2Q15822 529 aa22.3■■□□□ 1.16
CHMP1A-209ENST00000550872 USP21Q9UK80 565 aa22.3■■□□□ 1.16
CHMP1A-209ENST00000550872 SLIT3O75094 1523 aa22.3■■□□□ 1.16
CHMP1A-209ENST00000550872 KNSTRNQ9Y448 316 aa22.29■■□□□ 1.16
CHMP1A-209ENST00000550872 CDK12Q9NYV4 1490 aaPredicted RBP22.28■■□□□ 1.16
CHMP1A-209ENST00000550872 RXRBP28702 533 aa22.28■■□□□ 1.16
CHMP1A-209ENST00000550872 OVOS2A0A0J9YW53 1432 aa22.28■■□□□ 1.16
CHMP1A-209ENST00000550872 OVOS2Q6IE36 1432 aa22.28■■□□□ 1.16
CHMP1A-209ENST00000550872 CPDO75976 1380 aa22.26■■□□□ 1.15
CHMP1A-209ENST00000550872 SLIT2O94813 1529 aa22.26■■□□□ 1.15
CHMP1A-209ENST00000550872 BTG4Q9NY30 223 aa22.25■■□□□ 1.15
CHMP1A-209ENST00000550872 USP54Q70EL1 1684 aa22.25■■□□□ 1.15
CHMP1A-209ENST00000550872 KIF20BQ96Q89 1820 aa22.24■■□□□ 1.15
CHMP1A-209ENST00000550872 ARHGEF25Q86VW2 580 aa22.24■■□□□ 1.15
CHMP1A-209ENST00000550872 UNC5CLQ8IV45 518 aa22.24■■□□□ 1.15
CHMP1A-209ENST00000550872 QTRT2Q9H974 415 aaKnown RBP22.24■■□□□ 1.15
CHMP1A-209ENST00000550872 COL14A1Q05707 1796 aaKnown RBP22.24■■□□□ 1.15
CHMP1A-209ENST00000550872 UPF1Q92900 1129 aaKnown RBP eCLIP22.23■■□□□ 1.15
CHMP1A-209ENST00000550872 BCL9LQ86UU0 1499 aa22.22■■□□□ 1.15
CHMP1A-209ENST00000550872 PER1O15534 1290 aaPredicted RBP22.22■■□□□ 1.15
CHMP1A-209ENST00000550872 TRPC5Q9UL62 973 aaPredicted RBP22.22■■□□□ 1.15
CHMP1A-209ENST00000550872 NFAT5O94916 1531 aa22.21■■□□□ 1.15
CHMP1A-209ENST00000550872 FBLN1P23142 703 aa22.21■■□□□ 1.15
CHMP1A-209ENST00000550872 PLCH1Q4KWH8 1693 aa22.2■■□□□ 1.15
CHMP1A-209ENST00000550872 AATKQ6ZMQ8 1374 aa22.2■■□□□ 1.14
CHMP1A-209ENST00000550872 EVA1CP58658 441 aa22.19■■□□□ 1.14
CHMP1A-209ENST00000550872 STRN4Q9NRL3 753 aa22.19■■□□□ 1.14
CHMP1A-209ENST00000550872 NWD2Q9ULI1 1742 aa22.18■■□□□ 1.14
CHMP1A-209ENST00000550872 NSD2O96028 1365 aa22.18■■□□□ 1.14
CHMP1A-209ENST00000550872 AMER1Q5JTC6 1135 aaPredicted RBP22.18■■□□□ 1.14
CHMP1A-209ENST00000550872 CCDC9Q9Y3X0 531 aaKnown RBP22.18■■□□□ 1.14
CHMP1A-209ENST00000550872 RBM6P78332 1123 aaKnown RBP22.17■■□□□ 1.14
CHMP1A-209ENST00000550872 MORC1Q86VD1 984 aa22.17■■□□□ 1.14
CHMP1A-209ENST00000550872 ATRNO75882 1429 aa22.16■■□□□ 1.14
CHMP1A-209ENST00000550872 RRS1Q15050 365 aaKnown RBP22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms