RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 ANKRD50Q9ULJ7 1429 aa10.61□□□□□ -0.71
DEPDC4-208ENST00000549341 PTCH1Q13635 1447 aa10.59□□□□□ -0.71
DEPDC4-208ENST00000549341 DEFB132Q7Z7B7 95 aa10.59□□□□□ -0.71
DEPDC4-208ENST00000549341 L3MBTL3Q96JM7 780 aaPredicted RBP10.59□□□□□ -0.71
DEPDC4-208ENST00000549341 PCDHB8Q9UN66 801 aa10.59□□□□□ -0.71
DEPDC4-208ENST00000549341 METP08581 1390 aa10.59□□□□□ -0.71
DEPDC4-208ENST00000549341 C1orf167Q5SNV9 1468 aa10.59□□□□□ -0.71
DEPDC4-208ENST00000549341 UNC13BO14795 1591 aa10.59□□□□□ -0.71
DEPDC4-208ENST00000549341 XRN1Q8IZH2 1706 aaKnown RBP10.58□□□□□ -0.72
DEPDC4-208ENST00000549341 FAM50AQ14320 339 aaKnown RBP10.58□□□□□ -0.72
DEPDC4-208ENST00000549341 C3orf67Q6ZVT6 689 aa10.58□□□□□ -0.72
DEPDC4-208ENST00000549341 CCDC125Q86Z20 511 aa10.58□□□□□ -0.72
DEPDC4-208ENST00000549341 FNBP4Q8N3X1 1017 aaPredicted RBP10.58□□□□□ -0.72
DEPDC4-208ENST00000549341 MARVELD3Q96A59 401 aa10.58□□□□□ -0.72
DEPDC4-208ENST00000549341 MYO5BQ9ULV0 1848 aa10.58□□□□□ -0.72
DEPDC4-208ENST00000549341 BLMP54132 1417 aaPredicted RBP10.58□□□□□ -0.72
DEPDC4-208ENST00000549341 ADGRL2O95490 1459 aa10.57□□□□□ -0.72
DEPDC4-208ENST00000549341 GOLGA2Q08379 1002 aa10.57□□□□□ -0.72
DEPDC4-208ENST00000549341 ZNF326Q5BKZ1 582 aaKnown RBP10.57□□□□□ -0.72
DEPDC4-208ENST00000549341 FBXO3Q9UK99 471 aa10.57□□□□□ -0.72
DEPDC4-208ENST00000549341 PSDA5PKW4 1024 aaPredicted RBP10.56□□□□□ -0.72
DEPDC4-208ENST00000549341 MKRN3Q13064 507 aaKnown RBP10.56□□□□□ -0.72
DEPDC4-208ENST00000549341 SF3B2Q13435 895 aaKnown RBP10.56□□□□□ -0.72
DEPDC4-208ENST00000549341 ZNF467Q7Z7K2 595 aaPredicted RBP10.56□□□□□ -0.72
DEPDC4-208ENST00000549341 ORAI2Q96SN7 254 aa10.56□□□□□ -0.72
DEPDC4-208ENST00000549341 XPCQ01831 940 aaPredicted RBP10.55□□□□□ -0.72
DEPDC4-208ENST00000549341 SOS2Q07890 1332 aaPredicted RBP10.55□□□□□ -0.72
DEPDC4-208ENST00000549341 MYOM2P54296 1465 aa10.55□□□□□ -0.72
DEPDC4-208ENST00000549341 BCL9LQ86UU0 1499 aa10.55□□□□□ -0.72
DEPDC4-208ENST00000549341 FKBP8Q14318 412 aa10.54□□□□□ -0.72
DEPDC4-208ENST00000549341 GSE1Q14687 1217 aa10.54□□□□□ -0.72
DEPDC4-208ENST00000549341 GJD4Q96KN9 370 aaPredicted RBP10.54□□□□□ -0.72
DEPDC4-208ENST00000549341 NRXN3Q9Y4C0 1643 aa10.54□□□□□ -0.72
DEPDC4-208ENST00000549341 NALCNQ8IZF0 1738 aa10.53□□□□□ -0.72
DEPDC4-208ENST00000549341 EMP3P54852 163 aa10.53□□□□□ -0.72
DEPDC4-208ENST00000549341 PDCD7Q8N8D1 485 aaKnown RBP10.53□□□□□ -0.72
DEPDC4-208ENST00000549341 RALGAPBQ86X10 1494 aa10.53□□□□□ -0.72
DEPDC4-208ENST00000549341 LRP5O75197 1615 aa10.52□□□□□ -0.73
DEPDC4-208ENST00000549341 A0A0G2JS52 829 aa10.51□□□□□ -0.73
DEPDC4-208ENST00000549341 MYT1Q01538 1121 aa10.51□□□□□ -0.73
DEPDC4-208ENST00000549341 ROBO2Q9HCK4 1378 aa10.51□□□□□ -0.73
DEPDC4-208ENST00000549341 E9PCH4 1651 aa10.5□□□□□ -0.73
DEPDC4-208ENST00000549341 ZEB1P37275 1124 aaPredicted RBP10.5□□□□□ -0.73
DEPDC4-208ENST00000549341 ESCO1Q5FWF5 840 aa10.5□□□□□ -0.73
DEPDC4-208ENST00000549341 CCDC9Q9Y3X0 531 aaKnown RBP10.5□□□□□ -0.73
DEPDC4-208ENST00000549341 NPHP3Q7Z494 1330 aa10.5□□□□□ -0.73
DEPDC4-208ENST00000549341 NUP155O75694 1391 aa10.5□□□□□ -0.73
DEPDC4-208ENST00000549341 RRBP1Q9P2E9 1410 aaKnown RBP10.5□□□□□ -0.73
DEPDC4-208ENST00000549341 HRCP23327 699 aa10.49□□□□□ -0.73
DEPDC4-208ENST00000549341 SEPT12Q8IYM1 358 aa10.49□□□□□ -0.73
DEPDC4-208ENST00000549341 GLI3P10071 1580 aa10.48□□□□□ -0.73
DEPDC4-208ENST00000549341 COL22A1Q8NFW1 1626 aaPredicted RBP10.48□□□□□ -0.73
DEPDC4-208ENST00000549341 CHRM1P11229 460 aaPredicted RBP10.48□□□□□ -0.73
DEPDC4-208ENST00000549341 UNC5CLQ8IV45 518 aa10.48□□□□□ -0.73
DEPDC4-208ENST00000549341 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.48□□□□□ -0.73
DEPDC4-208ENST00000549341 PXDNQ92626 1479 aa10.48□□□□□ -0.73
DEPDC4-208ENST00000549341 LAMC1P11047 1609 aa10.47□□□□□ -0.73
DEPDC4-208ENST00000549341 NUTM2FA1L443 756 aa10.47□□□□□ -0.73
DEPDC4-208ENST00000549341 FOXO3O43524 673 aa10.47□□□□□ -0.73
DEPDC4-208ENST00000549341 BAG6P46379 1132 aa10.47□□□□□ -0.73
DEPDC4-208ENST00000549341 HAP1P54257 671 aaPredicted RBP10.47□□□□□ -0.73
DEPDC4-208ENST00000549341 R3HDM1Q15032 1099 aaKnown RBP10.46□□□□□ -0.73
DEPDC4-208ENST00000549341 IQGAP3Q86VI3 1631 aa10.46□□□□□ -0.74
DEPDC4-208ENST00000549341 SLIT2O94813 1529 aa10.45□□□□□ -0.74
DEPDC4-208ENST00000549341 NEXMIFQ5QGS0 1516 aa10.45□□□□□ -0.74
DEPDC4-208ENST00000549341 YY1P25490 414 aa10.45□□□□□ -0.74
DEPDC4-208ENST00000549341 KRT27Q7Z3Y8 459 aa10.45□□□□□ -0.74
DEPDC4-208ENST00000549341 KLHL34Q8N239 644 aa10.45□□□□□ -0.74
DEPDC4-208ENST00000549341 HS3ST6Q96QI5 342 aa10.44□□□□□ -0.74
DEPDC4-208ENST00000549341 HFM1A2PYH4 1435 aa10.43□□□□□ -0.74
DEPDC4-208ENST00000549341 LRPPRCP42704 1394 aaKnown RBP10.43□□□□□ -0.74
DEPDC4-208ENST00000549341 FAM205CA6NFA0 338 aa10.43□□□□□ -0.74
DEPDC4-208ENST00000549341 ITGAEP38570 1179 aa10.43□□□□□ -0.74
DEPDC4-208ENST00000549341 PSEN1P49768 467 aa10.43□□□□□ -0.74
DEPDC4-208ENST00000549341 EN1Q05925 392 aaPredicted RBP10.43□□□□□ -0.74
DEPDC4-208ENST00000549341 VPS72Q15906 364 aa10.42□□□□□ -0.74
DEPDC4-208ENST00000549341 CDC42BPGQ6DT37 1551 aa10.42□□□□□ -0.74
DEPDC4-208ENST00000549341 USP32Q8NFA0 1604 aa10.41□□□□□ -0.74
DEPDC4-208ENST00000549341 CCER1Q8TC90 406 aaPredicted RBP10.41□□□□□ -0.74
DEPDC4-208ENST00000549341 CABLES1Q8TDN4 633 aa10.41□□□□□ -0.74
DEPDC4-208ENST00000549341 NAIPQ13075 1403 aa10.41□□□□□ -0.74
DEPDC4-208ENST00000549341 CLTCL1P53675 1640 aa10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 ROCK1Q13464 1354 aa10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 SPATA31A3Q5VYP0 1347 aa10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 G3V3G9 751 aa10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 FAM98CQ17RN3 349 aaKnown RBP10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 FAM182BQ5T319 152 aa10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 LMOD2Q6P5Q4 547 aa10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 KRTAP3-3Q9BYR6 98 aa10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 KRTAP3-2Q9BYR7 98 aa10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 CCDC144AA2RUR9 1427 aa10.4□□□□□ -0.75
DEPDC4-208ENST00000549341 SPHKAPQ2M3C7 1700 aa10.39□□□□□ -0.75
DEPDC4-208ENST00000549341 STK26Q9P289 416 aa10.39□□□□□ -0.75
DEPDC4-208ENST00000549341 PRAG1Q86YV5 1406 aa10.39□□□□□ -0.75
DEPDC4-208ENST00000549341 PDAP1Q13442 181 aaKnown RBP10.38□□□□□ -0.75
DEPDC4-208ENST00000549341 TNS3Q68CZ2 1445 aa10.38□□□□□ -0.75
DEPDC4-208ENST00000549341 VGFO15240 615 aaPredicted RBP10.37□□□□□ -0.75
DEPDC4-208ENST00000549341 ACIN1Q9UKV3 1341 aaKnown RBP10.36□□□□□ -0.75
DEPDC4-208ENST00000549341 MARF1Q9Y4F3 1742 aaKnown RBP10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms