RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	MS4A4A	Q96JQ5	239 aa		11.41	□□□□□ -0.58
SNHG1-223	ENST00000545440	MPHOSPH9	Q99550	1183 aa		11.41	□□□□□ -0.58
SNHG1-223	ENST00000545440	DCC	P43146	1447 aa		11.41	□□□□□ -0.58
SNHG1-223	ENST00000545440	RPGRIP1L	Q68CZ1	1315 aa		11.4	□□□□□ -0.58
SNHG1-223	ENST00000545440	EVX2	Q03828	476 aa		11.4	□□□□□ -0.58
SNHG1-223	ENST00000545440	E2F4	Q16254	413 aa		11.4	□□□□□ -0.58
SNHG1-223	ENST00000545440	POTEH	Q6S545	545 aa		11.4	□□□□□ -0.58
SNHG1-223	ENST00000545440	LARP6	Q9BRS8	491 aa	Known RBP	11.4	□□□□□ -0.58
SNHG1-223	ENST00000545440	PTCH1	Q13635	1447 aa		11.4	□□□□□ -0.58
SNHG1-223	ENST00000545440	DISP3	Q9P2K9	1392 aa		11.4	□□□□□ -0.59
SNHG1-223	ENST00000545440	COL16A1	Q07092	1604 aa	Predicted RBP	11.39	□□□□□ -0.59
SNHG1-223	ENST00000545440	NHSL1	Q5SYE7	1610 aa		11.39	□□□□□ -0.59
SNHG1-223	ENST00000545440	PLCG2	P16885	1265 aa		11.39	□□□□□ -0.59
SNHG1-223	ENST00000545440	MET	P08581	1390 aa		11.39	□□□□□ -0.59
SNHG1-223	ENST00000545440	AHDC1	Q5TGY3	1603 aa	Predicted RBP	11.38	□□□□□ -0.59
SNHG1-223	ENST00000545440	OCEL1	Q9H607	264 aa		11.38	□□□□□ -0.59
SNHG1-223	ENST00000545440	MYOM2	P54296	1465 aa		11.38	□□□□□ -0.59
SNHG1-223	ENST00000545440	SHPRH	Q149N8	1683 aa		11.37	□□□□□ -0.59
SNHG1-223	ENST00000545440	ADGRL3	Q9HAR2	1447 aa		11.37	□□□□□ -0.59
SNHG1-223	ENST00000545440	ATMIN	O43313	823 aa	Predicted RBP	11.37	□□□□□ -0.59
SNHG1-223	ENST00000545440	SEC24B	O95487	1268 aa		11.37	□□□□□ -0.59
SNHG1-223	ENST00000545440	ATN1	P54259	1190 aa	Predicted RBP	11.37	□□□□□ -0.59
SNHG1-223	ENST00000545440	ASTL	Q6HA08	431 aa	Predicted RBP	11.37	□□□□□ -0.59
SNHG1-223	ENST00000545440	RBM33	Q96EV2	1170 aa	Known RBP	11.37	□□□□□ -0.59
SNHG1-223	ENST00000545440	DDX27	Q96GQ7	796 aa	Known RBP	11.37	□□□□□ -0.59
SNHG1-223	ENST00000545440	AMOTL2	Q9Y2J4	779 aa		11.37	□□□□□ -0.59
SNHG1-223	ENST00000545440	ANKRD30B	Q9BXX2	1392 aa		11.37	□□□□□ -0.59
SNHG1-223	ENST00000545440	PIK3C2G	O75747	1445 aa		11.36	□□□□□ -0.59
SNHG1-223	ENST00000545440	ASXL1	Q8IXJ9	1541 aa		11.36	□□□□□ -0.59
SNHG1-223	ENST00000545440	GABBR2	O75899	941 aa		11.36	□□□□□ -0.59
SNHG1-223	ENST00000545440	TPRN	Q4KMQ1	711 aa		11.35	□□□□□ -0.59
SNHG1-223	ENST00000545440	ARHGEF1	Q92888	912 aa	Known RBP	11.35	□□□□□ -0.59
SNHG1-223	ENST00000545440	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.35	□□□□□ -0.59
SNHG1-223	ENST00000545440	NRXN1	Q9ULB1	1477 aa		11.35	□□□□□ -0.59
SNHG1-223	ENST00000545440	CDC42BPG	Q6DT37	1551 aa		11.35	□□□□□ -0.59
SNHG1-223	ENST00000545440	C14orf37	Q86TY3	774 aa		11.34	□□□□□ -0.59
SNHG1-223	ENST00000545440	C19orf44	Q9H6X5	657 aa		11.34	□□□□□ -0.59
SNHG1-223	ENST00000545440	HRC	P23327	699 aa		11.33	□□□□□ -0.6
SNHG1-223	ENST00000545440	TMC2	Q8TDI7	906 aa		11.33	□□□□□ -0.6
SNHG1-223	ENST00000545440	KCNV2	Q8TDN2	545 aa		11.33	□□□□□ -0.6
SNHG1-223	ENST00000545440	SLAIN2	Q9P270	581 aa		11.33	□□□□□ -0.6
SNHG1-223	ENST00000545440	TECPR2	O15040	1411 aa		11.33	□□□□□ -0.6
SNHG1-223	ENST00000545440	MST1R	Q04912	1400 aa		11.33	□□□□□ -0.6
SNHG1-223	ENST00000545440	FMN2	Q9NZ56	1722 aa		11.32	□□□□□ -0.6
SNHG1-223	ENST00000545440	ROBO2	Q9HCK4	1378 aa		11.31	□□□□□ -0.6
SNHG1-223	ENST00000545440	ATF3	P18847	181 aa		11.31	□□□□□ -0.6
SNHG1-223	ENST00000545440	CRISPLD2	Q9H0B8	497 aa		11.3	□□□□□ -0.6
SNHG1-223	ENST00000545440	BOLA1	Q9Y3E2	137 aa		11.3	□□□□□ -0.6
SNHG1-223	ENST00000545440	ADGRF5	Q8IZF2	1346 aa		11.3	□□□□□ -0.6
SNHG1-223	ENST00000545440	KIAA1210	Q9ULL0	1709 aa		11.29	□□□□□ -0.6
SNHG1-223	ENST00000545440	RGPD8	O14715	1765 aa	Predicted RBP	11.29	□□□□□ -0.6
SNHG1-223	ENST00000545440	RGL3	Q3MIN7	710 aa		11.29	□□□□□ -0.6
SNHG1-223	ENST00000545440	SLC39A7	Q92504	469 aa		11.29	□□□□□ -0.6
SNHG1-223	ENST00000545440	KIF1A	Q12756	1690 aa		11.28	□□□□□ -0.6
SNHG1-223	ENST00000545440	IRX5	P78411	483 aa	Predicted RBP	11.28	□□□□□ -0.6
SNHG1-223	ENST00000545440	MFSD10	Q14728	455 aa		11.28	□□□□□ -0.6
SNHG1-223	ENST00000545440	MICALL2	Q8IY33	904 aa		11.28	□□□□□ -0.6
SNHG1-223	ENST00000545440	ARHGEF28	Q8N1W1	1705 aa	Known RBP	11.28	□□□□□ -0.6
SNHG1-223	ENST00000545440	ADGRB1	O14514	1584 aa		11.28	□□□□□ -0.6
SNHG1-223	ENST00000545440	LRPPRC	P42704	1394 aa	Known RBP	11.28	□□□□□ -0.6
SNHG1-223	ENST00000545440	JCAD	Q9P266	1359 aa		11.28	□□□□□ -0.6
SNHG1-223	ENST00000545440	YTHDC2	Q9H6S0	1430 aa	Known RBP	11.27	□□□□□ -0.6
SNHG1-223	ENST00000545440	DLC1	Q96QB1	1528 aa		11.27	□□□□□ -0.61
SNHG1-223	ENST00000545440	SMYD5	Q6GMV2	418 aa		11.27	□□□□□ -0.61
SNHG1-223	ENST00000545440	GPHN	Q9NQX3	736 aa	Predicted RBP	11.27	□□□□□ -0.61
SNHG1-223	ENST00000545440	ADGRB2	O60241	1585 aa		11.27	□□□□□ -0.61
SNHG1-223	ENST00000545440	C7	P10643	843 aa		11.26	□□□□□ -0.61
SNHG1-223	ENST00000545440	ILDR2	Q71H61	639 aa		11.26	□□□□□ -0.61
SNHG1-223	ENST00000545440	ABCC11	Q96J66	1382 aa		11.26	□□□□□ -0.61
SNHG1-223	ENST00000545440	MARF1	Q9Y4F3	1742 aa	Known RBP	11.26	□□□□□ -0.61
SNHG1-223	ENST00000545440	C1orf167	Q5SNV9	1468 aa		11.25	□□□□□ -0.61
SNHG1-223	ENST00000545440	PPP1R15B	Q5SWA1	713 aa		11.25	□□□□□ -0.61
SNHG1-223	ENST00000545440	DPY19L2	Q6NUT2	758 aa		11.25	□□□□□ -0.61
SNHG1-223	ENST00000545440	BRINP3	Q76B58	766 aa		11.25	□□□□□ -0.61
SNHG1-223	ENST00000545440	PDCD7	Q8N8D1	485 aa	Known RBP	11.25	□□□□□ -0.61
SNHG1-223	ENST00000545440	COL22A1	Q8NFW1	1626 aa	Predicted RBP	11.24	□□□□□ -0.61
SNHG1-223	ENST00000545440	LRP6	O75581	1613 aa		11.24	□□□□□ -0.61
SNHG1-223	ENST00000545440	ITSN1	Q15811	1721 aa		11.23	□□□□□ -0.61
SNHG1-223	ENST00000545440	PRKCSH	P14314	528 aa	Predicted RBP	11.23	□□□□□ -0.61
SNHG1-223	ENST00000545440	C14orf93	Q9H972	538 aa	Known RBP	11.23	□□□□□ -0.61
SNHG1-223	ENST00000545440	SPATA31A6	Q5VVP1	1343 aa		11.22	□□□□□ -0.61
SNHG1-223	ENST00000545440	USP32	Q8NFA0	1604 aa		11.21	□□□□□ -0.61
SNHG1-223	ENST00000545440	DHX57	Q6P158	1386 aa	Known RBP	11.21	□□□□□ -0.61
SNHG1-223	ENST00000545440	STAC3	Q96MF2	364 aa		11.21	□□□□□ -0.61
SNHG1-223	ENST00000545440	PLEKHH1	Q9ULM0	1364 aa		11.2	□□□□□ -0.62
SNHG1-223	ENST00000545440	TMEM132E	Q6IEE7	984 aa		11.2	□□□□□ -0.62
SNHG1-223	ENST00000545440	ABCA3	Q99758	1704 aa		11.19	□□□□□ -0.62
SNHG1-223	ENST00000545440	SOCS7	O14512	581 aa		11.19	□□□□□ -0.62
SNHG1-223	ENST00000545440	CFAP70	Q5T0N1	1121 aa		11.19	□□□□□ -0.62
SNHG1-223	ENST00000545440	SP7	Q8TDD2	431 aa	Predicted RBP	11.19	□□□□□ -0.62
SNHG1-223	ENST00000545440	SIRT1	Q96EB6	747 aa		11.19	□□□□□ -0.62
SNHG1-223	ENST00000545440	STK26	Q9P289	416 aa		11.19	□□□□□ -0.62
SNHG1-223	ENST00000545440	PXDN	Q92626	1479 aa		11.19	□□□□□ -0.62
SNHG1-223	ENST00000545440	C3orf67	Q6ZVT6	689 aa		11.18	□□□□□ -0.62
SNHG1-223	ENST00000545440	PNPLA6	Q8IY17	1366 aa		11.17	□□□□□ -0.62
SNHG1-223	ENST00000545440	TRPM1	Q7Z4N2	1603 aa		11.17	□□□□□ -0.62
SNHG1-223	ENST00000545440	WAPL	Q7Z5K2	1190 aa		11.17	□□□□□ -0.62
SNHG1-223	ENST00000545440	DCAF11	Q8TEB1	546 aa		11.17	□□□□□ -0.62
SNHG1-223	ENST00000545440	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.17	□□□□□ -0.62
SNHG1-223	ENST00000545440	TOPAZ1	Q8N9V7	1692 aa		11.17	□□□□□ -0.62

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