RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 TOPAZ1Q8N9V7 1692 aa22.75■■□□□ 1.23
CLSTN3-213ENST00000541953 FAM98CQ17RN3 349 aaKnown RBP22.75■■□□□ 1.23
CLSTN3-213ENST00000541953 KRT27Q7Z3Y8 459 aa22.75■■□□□ 1.23
CLSTN3-213ENST00000541953 GPRASP1Q5JY77 1395 aa22.75■■□□□ 1.23
CLSTN3-213ENST00000541953 THSD7AQ9UPZ6 1657 aa22.74■■□□□ 1.23
CLSTN3-213ENST00000541953 EIF3AQ14152 1382 aaKnown RBP22.73■■□□□ 1.23
CLSTN3-213ENST00000541953 FAM182BQ5T319 152 aa22.72■■□□□ 1.23
CLSTN3-213ENST00000541953 NGDNQ8NEJ9 315 aaKnown RBP22.71■■□□□ 1.23
CLSTN3-213ENST00000541953 A0A0G2JS52 829 aa22.7■■□□□ 1.22
CLSTN3-213ENST00000541953 MYT1Q01538 1121 aa22.7■■□□□ 1.22
CLSTN3-213ENST00000541953 TNS1Q9HBL0 1735 aaKnown RBP22.69■■□□□ 1.22
CLSTN3-213ENST00000541953 PAK3O75914 559 aaPredicted RBP22.69■■□□□ 1.22
CLSTN3-213ENST00000541953 NUDT16Q96DE0 195 aaKnown RBP22.69■■□□□ 1.22
CLSTN3-213ENST00000541953 SPATA31A5Q5VU36 1347 aa22.68■■□□□ 1.22
CLSTN3-213ENST00000541953 SPATA31A7Q8IWB4 1347 aa22.68■■□□□ 1.22
CLSTN3-213ENST00000541953 KIAA0232Q92628 1395 aa22.67■■□□□ 1.22
CLSTN3-213ENST00000541953 RGPD1P0DJD0 1748 aa22.66■■□□□ 1.22
CLSTN3-213ENST00000541953 KIAA1210Q9ULL0 1709 aa22.66■■□□□ 1.22
CLSTN3-213ENST00000541953 CHRNA2Q15822 529 aa22.66■■□□□ 1.22
CLSTN3-213ENST00000541953 NUTM2GQ5VZR2 741 aa22.66■■□□□ 1.22
CLSTN3-213ENST00000541953 NRKQ7Z2Y5 1582 aa22.65■■□□□ 1.22
CLSTN3-213ENST00000541953 SF3B2Q13435 895 aaKnown RBP22.65■■□□□ 1.22
CLSTN3-213ENST00000541953 PRDM11Q9NQV5 511 aa22.65■■□□□ 1.22
CLSTN3-213ENST00000541953 LRP5O75197 1615 aa22.64■■□□□ 1.22
CLSTN3-213ENST00000541953 CDK19Q9BWU1 502 aa22.64■■□□□ 1.21
CLSTN3-213ENST00000541953 PSDA5PKW4 1024 aaPredicted RBP22.63■■□□□ 1.21
CLSTN3-213ENST00000541953 NBPF1Q3BBV0 1214 aa22.63■■□□□ 1.21
CLSTN3-213ENST00000541953 POLR3AO14802 1390 aaPredicted RBP22.63■■□□□ 1.21
CLSTN3-213ENST00000541953 ACEP12821 1306 aa22.61■■□□□ 1.21
CLSTN3-213ENST00000541953 HRCP23327 699 aa22.61■■□□□ 1.21
CLSTN3-213ENST00000541953 STAC3Q96MF2 364 aa22.61■■□□□ 1.21
CLSTN3-213ENST00000541953 ZC3H6P61129 1189 aaKnown RBP22.6■■□□□ 1.21
CLSTN3-213ENST00000541953 EN1Q05925 392 aaPredicted RBP22.6■■□□□ 1.21
CLSTN3-213ENST00000541953 LMO7Q8WWI1 1683 aa22.6■■□□□ 1.21
CLSTN3-213ENST00000541953 SPATA31A1Q5TZJ5 1347 aa22.59■■□□□ 1.21
CLSTN3-213ENST00000541953 CAMTA1Q9Y6Y1 1673 aa22.58■■□□□ 1.21
CLSTN3-213ENST00000541953 BAG6P46379 1132 aa22.58■■□□□ 1.21
CLSTN3-213ENST00000541953 STRN4Q9NRL3 753 aa22.58■■□□□ 1.21
CLSTN3-213ENST00000541953 NBPF8Q3BBV2 869 aa22.57■■□□□ 1.2
CLSTN3-213ENST00000541953 QRICH2Q9H0J4 1663 aa22.56■■□□□ 1.2
CLSTN3-213ENST00000541953 SSH2Q76I76 1423 aa22.56■■□□□ 1.2
CLSTN3-213ENST00000541953 DISP2A7MBM2 1401 aa22.55■■□□□ 1.2
CLSTN3-213ENST00000541953 PLEKHG3A1L390 1219 aa22.54■■□□□ 1.2
CLSTN3-213ENST00000541953 CCDC61Q9Y6R9 512 aa22.54■■□□□ 1.2
CLSTN3-213ENST00000541953 USP35Q9P2H5 1018 aa22.53■■□□□ 1.2
CLSTN3-213ENST00000541953 PPIP5K1Q6PFW1 1433 aa22.53■■□□□ 1.2
CLSTN3-213ENST00000541953 USP19O94966 1318 aa22.53■■□□□ 1.2
CLSTN3-213ENST00000541953 EZH2Q15910 746 aaKnown RBP22.51■■□□□ 1.19
CLSTN3-213ENST00000541953 LARP1Q6PKG0 1096 aaKnown RBP22.51■■□□□ 1.19
CLSTN3-213ENST00000541953 CABP2Q9NPB3 220 aa22.51■■□□□ 1.19
CLSTN3-213ENST00000541953 RREB1Q92766 1687 aa22.49■■□□□ 1.19
CLSTN3-213ENST00000541953 TRIM37O94972 964 aa22.49■■□□□ 1.19
CLSTN3-213ENST00000541953 R3HDM1Q15032 1099 aaKnown RBP22.49■■□□□ 1.19
CLSTN3-213ENST00000541953 ABTB2Q8N961 1025 aa22.49■■□□□ 1.19
CLSTN3-213ENST00000541953 CPDO75976 1380 aa22.49■■□□□ 1.19
CLSTN3-213ENST00000541953 CENPJQ9HC77 1338 aaPredicted RBP22.48■■□□□ 1.19
CLSTN3-213ENST00000541953 PIK3C2AO00443 1686 aa22.47■■□□□ 1.19
CLSTN3-213ENST00000541953 SRPK2P78362 688 aaKnown RBP22.47■■□□□ 1.19
CLSTN3-213ENST00000541953 NUP188Q5SRE5 1749 aa22.47■■□□□ 1.19
CLSTN3-213ENST00000541953 COL5A2P05997 1499 aaPredicted RBP22.47■■□□□ 1.19
CLSTN3-213ENST00000541953 CAMKK2Q96RR4 588 aa22.46■■□□□ 1.19
CLSTN3-213ENST00000541953 PARP4Q9UKK3 1724 aaKnown RBP22.45■■□□□ 1.19
CLSTN3-213ENST00000541953 TRPM1Q7Z4N2 1603 aa22.45■■□□□ 1.18
CLSTN3-213ENST00000541953 SLIT3O75094 1523 aa22.44■■□□□ 1.18
CLSTN3-213ENST00000541953 BARGINQ6ZT62 677 aa22.44■■□□□ 1.18
CLSTN3-213ENST00000541953 USP6P35125 1406 aa22.43■■□□□ 1.18
CLSTN3-213ENST00000541953 GCP02774 474 aa22.43■■□□□ 1.18
CLSTN3-213ENST00000541953 EVA1CP58658 441 aa22.43■■□□□ 1.18
CLSTN3-213ENST00000541953 FAM196AQ6ZSG2 479 aa22.43■■□□□ 1.18
CLSTN3-213ENST00000541953 COL18A1P39060 1754 aa22.43■■□□□ 1.18
CLSTN3-213ENST00000541953 PEAK1Q9H792 1746 aa22.42■■□□□ 1.18
CLSTN3-213ENST00000541953 LRRC37A3O60309 1634 aa22.42■■□□□ 1.18
CLSTN3-213ENST00000541953 TCP11L2Q8N4U5 519 aa22.41■■□□□ 1.18
CLSTN3-213ENST00000541953 L3MBTL2Q969R5 705 aa22.41■■□□□ 1.18
CLSTN3-213ENST00000541953 CABP1Q9NZU7 370 aa22.41■■□□□ 1.18
CLSTN3-213ENST00000541953 APBA3O96018 575 aa22.4■■□□□ 1.18
CLSTN3-213ENST00000541953 WNK3Q9BYP7 1800 aa22.39■■□□□ 1.17
CLSTN3-213ENST00000541953 NLRP13Q86W25 1043 aa22.39■■□□□ 1.17
CLSTN3-213ENST00000541953 SIN3AQ96ST3 1273 aa22.39■■□□□ 1.17
CLSTN3-213ENST00000541953 ZBTB7CA1YPR0 619 aa22.38■■□□□ 1.17
CLSTN3-213ENST00000541953 AKAP12Q02952 1782 aa22.38■■□□□ 1.17
CLSTN3-213ENST00000541953 PDE3BQ13370 1112 aa22.37■■□□□ 1.17
CLSTN3-213ENST00000541953 CRB1P82279 1406 aa22.37■■□□□ 1.17
CLSTN3-213ENST00000541953 RGPD5Q99666 1765 aa22.37■■□□□ 1.17
CLSTN3-213ENST00000541953 SBF2Q86WG5 1849 aa22.36■■□□□ 1.17
CLSTN3-213ENST00000541953 NLRP6P59044 892 aa22.34■■□□□ 1.17
CLSTN3-213ENST00000541953 PARD3Q8TEW0 1356 aa22.34■■□□□ 1.17
CLSTN3-213ENST00000541953 AXIN2Q9Y2T1 843 aa22.33■■□□□ 1.17
CLSTN3-213ENST00000541953 BRD4O60885 1362 aaPredicted RBP22.33■■□□□ 1.17
CLSTN3-213ENST00000541953 AATKQ6ZMQ8 1374 aa22.33■■□□□ 1.17
CLSTN3-213ENST00000541953 PTF1AQ7RTS3 328 aa22.32■■□□□ 1.16
CLSTN3-213ENST00000541953 THRAP3Q9Y2W1 955 aaKnown RBP22.32■■□□□ 1.16
CLSTN3-213ENST00000541953 CPSF1Q10570 1443 aaKnown RBP22.31■■□□□ 1.16
CLSTN3-213ENST00000541953 NFAT5O94916 1531 aa22.3■■□□□ 1.16
CLSTN3-213ENST00000541953 OVOS2A0A0G2JMS6 1433 aa22.29■■□□□ 1.16
CLSTN3-213ENST00000541953 OVOS2A0A0J9YW53 1432 aa22.29■■□□□ 1.16
CLSTN3-213ENST00000541953 OVOS2Q6IE36 1432 aa22.29■■□□□ 1.16
CLSTN3-213ENST00000541953 TTC21BQ7Z4L5 1316 aa22.29■■□□□ 1.16
CLSTN3-213ENST00000541953 ROCK2O75116 1388 aaKnown RBP22.28■■□□□ 1.16
CLSTN3-213ENST00000541953 MON2Q7Z3U7 1717 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms