RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 SRCAPQ6ZRS2 3230 aa20.22■□□□□ 0.83
USP28-209ENST00000540925 RXRBP28702 533 aa20.22■□□□□ 0.83
USP28-209ENST00000540925 QTRT2Q9H974 415 aaKnown RBP20.22■□□□□ 0.83
USP28-209ENST00000540925 TIMELESSQ9UNS1 1208 aa20.22■□□□□ 0.83
USP28-209ENST00000540925 USP21Q9UK80 565 aa20.21■□□□□ 0.83
USP28-209ENST00000540925 RBM6P78332 1123 aaKnown RBP20.19■□□□□ 0.82
USP28-209ENST00000540925 LMOD2Q6P5Q4 547 aa20.19■□□□□ 0.82
USP28-209ENST00000540925 BRD4O60885 1362 aaPredicted RBP20.19■□□□□ 0.82
USP28-209ENST00000540925 SSH2Q76I76 1423 aa20.19■□□□□ 0.82
USP28-209ENST00000540925 UPF1Q92900 1129 aaKnown RBP eCLIP20.18■□□□□ 0.82
USP28-209ENST00000540925 CABP1Q9NZU7 370 aa20.18■□□□□ 0.82
USP28-209ENST00000540925 TRPC5Q9UL62 973 aaPredicted RBP20.18■□□□□ 0.82
USP28-209ENST00000540925 PLCH1Q4KWH8 1693 aa20.17■□□□□ 0.82
USP28-209ENST00000540925 NWD2Q9ULI1 1742 aa20.17■□□□□ 0.82
USP28-209ENST00000540925 RGS12O14924 1447 aa20.17■□□□□ 0.82
USP28-209ENST00000540925 USP6P35125 1406 aa20.17■□□□□ 0.82
USP28-209ENST00000540925 PAK3O75914 559 aaPredicted RBP20.16■□□□□ 0.82
USP28-209ENST00000540925 TESK2Q96S53 571 aa20.16■□□□□ 0.82
USP28-209ENST00000540925 ATAD2Q6PL18 1390 aa20.16■□□□□ 0.82
USP28-209ENST00000540925 PHRF1Q9P1Y6 1649 aaKnown RBP20.16■□□□□ 0.82
USP28-209ENST00000540925 FAM83GA6ND36 823 aa20.15■□□□□ 0.82
USP28-209ENST00000540925 UNC5CLQ8IV45 518 aa20.15■□□□□ 0.82
USP28-209ENST00000540925 CPSF1Q10570 1443 aaKnown RBP20.14■□□□□ 0.81
USP28-209ENST00000540925 USP19O94966 1318 aa20.14■□□□□ 0.81
USP28-209ENST00000540925 AKAP12Q02952 1782 aa20.13■□□□□ 0.81
USP28-209ENST00000540925 COL14A1Q05707 1796 aaKnown RBP20.13■□□□□ 0.81
USP28-209ENST00000540925 NRAPQ86VF7 1730 aa20.13■□□□□ 0.81
USP28-209ENST00000540925 HAP1P54257 671 aaPredicted RBP20.12■□□□□ 0.81
USP28-209ENST00000540925 PUS7Q96PZ0 661 aaKnown RBP20.12■□□□□ 0.81
USP28-209ENST00000540925 GLI3P10071 1580 aa20.12■□□□□ 0.81
USP28-209ENST00000540925 NRKQ7Z2Y5 1582 aa20.12■□□□□ 0.81
USP28-209ENST00000540925 CD163L1Q9NR16 1453 aa20.11■□□□□ 0.81
USP28-209ENST00000540925 ST20-MTHFSA0A0A6YYL1 179 aa20.11■□□□□ 0.81
USP28-209ENST00000540925 PLEKHG5O94827 1062 aa20.11■□□□□ 0.81
USP28-209ENST00000540925 GJD4Q96KN9 370 aaPredicted RBP20.1■□□□□ 0.81
USP28-209ENST00000540925 PIK3C2AO00443 1686 aa20.1■□□□□ 0.81
USP28-209ENST00000540925 EP400Q96L91 3159 aa20.09■□□□□ 0.81
USP28-209ENST00000540925 ABTB2Q8N961 1025 aa20.09■□□□□ 0.81
USP28-209ENST00000540925 ZNF692Q9BU19 519 aaPredicted RBP20.09■□□□□ 0.81
USP28-209ENST00000540925 USP47Q96K76 1375 aa20.08■□□□□ 0.81
USP28-209ENST00000540925 MON2Q7Z3U7 1717 aa20.08■□□□□ 0.81
USP28-209ENST00000540925 VPS72Q15906 364 aa20.08■□□□□ 0.81
USP28-209ENST00000540925 NUTM2GQ5VZR2 741 aa20.08■□□□□ 0.81
USP28-209ENST00000540925 KIAA0232Q92628 1395 aa20.08■□□□□ 0.8
USP28-209ENST00000540925 SLIT3O75094 1523 aa20.07■□□□□ 0.8
USP28-209ENST00000540925 CPDO75976 1380 aa20.07■□□□□ 0.8
USP28-209ENST00000540925 CCER1Q8TC90 406 aaPredicted RBP20.06■□□□□ 0.8
USP28-209ENST00000540925 TTC21BQ7Z4L5 1316 aa20.05■□□□□ 0.8
USP28-209ENST00000540925 NLRP13Q86W25 1043 aa20.05■□□□□ 0.8
USP28-209ENST00000540925 LMO7Q8WWI1 1683 aa20.04■□□□□ 0.8
USP28-209ENST00000540925 SLC24A1O60721 1099 aa20.04■□□□□ 0.8
USP28-209ENST00000540925 BTG4Q9NY30 223 aa20.04■□□□□ 0.8
USP28-209ENST00000540925 TTC21AQ8NDW8 1320 aa20.03■□□□□ 0.8
USP28-209ENST00000540925 ONECUT3O60422 494 aaPredicted RBP20.03■□□□□ 0.8
USP28-209ENST00000540925 GCP02774 474 aa20.03■□□□□ 0.8
USP28-209ENST00000540925 PRDM11Q9NQV5 511 aa20.03■□□□□ 0.8
USP28-209ENST00000540925 KTN1Q86UP2 1357 aaKnown RBP20.03■□□□□ 0.8
USP28-209ENST00000540925 SLC12A5Q9H2X9 1139 aa20.02■□□□□ 0.8
USP28-209ENST00000540925 USP54Q70EL1 1684 aa20.02■□□□□ 0.8
USP28-209ENST00000540925 NINLQ9Y2I6 1382 aa20.01■□□□□ 0.79
USP28-209ENST00000540925 ZC3H6P61129 1189 aaKnown RBP20.01■□□□□ 0.79
USP28-209ENST00000540925 NLRP6P59044 892 aa20■□□□□ 0.79
USP28-209ENST00000540925 CAMTA1Q9Y6Y1 1673 aa20■□□□□ 0.79
USP28-209ENST00000540925 A0A1W2PP64 1363 aa19.99■□□□□ 0.79
USP28-209ENST00000540925 USP31Q70CQ4 1352 aa19.99■□□□□ 0.79
USP28-209ENST00000540925 CHRNA2Q15822 529 aa19.99■□□□□ 0.79
USP28-209ENST00000540925 EDC4Q6P2E9 1401 aaKnown RBP19.98■□□□□ 0.79
USP28-209ENST00000540925 SPATA31A5Q5VU36 1347 aa19.98■□□□□ 0.79
USP28-209ENST00000540925 SPATA31A7Q8IWB4 1347 aa19.98■□□□□ 0.79
USP28-209ENST00000540925 NFAT5O94916 1531 aa19.97■□□□□ 0.79
USP28-209ENST00000540925 COL18A1P39060 1754 aa19.97■□□□□ 0.79
USP28-209ENST00000540925 TMC1Q8TDI8 760 aa19.96■□□□□ 0.79
USP28-209ENST00000540925 BRWD3Q6RI45 1802 aa19.96■□□□□ 0.79
USP28-209ENST00000540925 AATKQ6ZMQ8 1374 aa19.95■□□□□ 0.79
USP28-209ENST00000540925 TMF1P82094 1093 aa19.95■□□□□ 0.78
USP28-209ENST00000540925 TERF2IPQ9NYB0 399 aa19.95■□□□□ 0.78
USP28-209ENST00000540925 THSD7AQ9UPZ6 1657 aa19.94■□□□□ 0.78
USP28-209ENST00000540925 HDGFL2Q7Z4V5 671 aaPredicted RBP19.94■□□□□ 0.78
USP28-209ENST00000540925 SEPT12Q8IYM1 358 aa19.94■□□□□ 0.78
USP28-209ENST00000540925 COL5A2P05997 1499 aaPredicted RBP19.93■□□□□ 0.78
USP28-209ENST00000540925 SPATA31A1Q5TZJ5 1347 aa19.93■□□□□ 0.78
USP28-209ENST00000540925 ARHGEF25Q86VW2 580 aa19.92■□□□□ 0.78
USP28-209ENST00000540925 NME9Q86XW9 330 aa19.92■□□□□ 0.78
USP28-209ENST00000540925 ZRANB1Q9UGI0 708 aa19.92■□□□□ 0.78
USP28-209ENST00000540925 CCDC9Q9Y3X0 531 aaKnown RBP19.92■□□□□ 0.78
USP28-209ENST00000540925 ANKRD36BQ8N2N9 1353 aa19.92■□□□□ 0.78
USP28-209ENST00000540925 OVOS2A0A0J9YW53 1432 aa19.92■□□□□ 0.78
USP28-209ENST00000540925 OVOS2Q6IE36 1432 aa19.92■□□□□ 0.78
USP28-209ENST00000540925 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.91■□□□□ 0.78
USP28-209ENST00000540925 KCNH5Q8NCM2 988 aa19.91■□□□□ 0.78
USP28-209ENST00000540925 ABCC6O95255 1503 aa19.91■□□□□ 0.78
USP28-209ENST00000540925 MYOM1P52179 1685 aa19.91■□□□□ 0.78
USP28-209ENST00000540925 FAM98CQ17RN3 349 aaKnown RBP19.9■□□□□ 0.78
USP28-209ENST00000540925 LARP1Q6PKG0 1096 aaKnown RBP19.89■□□□□ 0.77
USP28-209ENST00000540925 CDCA8Q53HL2 280 aa19.88■□□□□ 0.77
USP28-209ENST00000540925 STRN4Q9NRL3 753 aa19.88■□□□□ 0.77
USP28-209ENST00000540925 AXIN2Q9Y2T1 843 aa19.88■□□□□ 0.77
USP28-209ENST00000540925 BARGINQ6ZT62 677 aa19.86■□□□□ 0.77
USP28-209ENST00000540925 KRT27Q7Z3Y8 459 aa19.85■□□□□ 0.77
USP28-209ENST00000540925 CRB1P82279 1406 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms