RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 EHBP1Q8NDI1 1231 aa8.89□□□□□ -0.99
VPS13A-213ENST00000539950 TSC1Q92574 1164 aa8.89□□□□□ -0.99
VPS13A-213ENST00000539950 MAP10Q9P2G4 905 aa8.89□□□□□ -0.99
VPS13A-213ENST00000539950 SIAH2O43255 324 aa8.88□□□□□ -0.99
VPS13A-213ENST00000539950 F12P00748 615 aaPredicted RBP8.88□□□□□ -0.99
VPS13A-213ENST00000539950 CTHP32929 405 aa8.88□□□□□ -0.99
VPS13A-213ENST00000539950 FAM117AQ9C073 453 aa8.88□□□□□ -0.99
VPS13A-213ENST00000539950 RSPH6AQ9H0K4 717 aa8.88□□□□□ -0.99
VPS13A-213ENST00000539950 AXIN1O15169 862 aa8.87□□□□□ -0.99
VPS13A-213ENST00000539950 ALDH1A1P00352 501 aa8.87□□□□□ -0.99
VPS13A-213ENST00000539950 CTC1Q2NKJ3 1217 aa8.87□□□□□ -0.99
VPS13A-213ENST00000539950 ZNF511Q8NB15 262 aa8.87□□□□□ -0.99
VPS13A-213ENST00000539950 HPS1Q92902 700 aa8.87□□□□□ -0.99
VPS13A-213ENST00000539950 SMCPP49901 116 aaPredicted RBP8.86□□□□□ -0.99
VPS13A-213ENST00000539950 PLEKHG3A1L390 1219 aa8.84□□□□□ -0.99
VPS13A-213ENST00000539950 FBXO31Q5XUX0 539 aaPredicted RBP8.84□□□□□ -0.99
VPS13A-213ENST00000539950 SKIV2LQ15477 1246 aaKnown RBP8.83□□□□□ -1
VPS13A-213ENST00000539950 SH3D19Q5HYK7 790 aa8.82□□□□□ -1
VPS13A-213ENST00000539950 PROCA1Q8NCQ7 364 aaPredicted RBP8.82□□□□□ -1
VPS13A-213ENST00000539950 ZNF775Q96BV0 537 aaPredicted RBP8.82□□□□□ -1
VPS13A-213ENST00000539950 DDRGK1Q96HY6 314 aa8.82□□□□□ -1
VPS13A-213ENST00000539950 TLL2Q9Y6L7 1015 aa8.82□□□□□ -1
VPS13A-213ENST00000539950 VARSP26640 1264 aaKnown RBP8.81□□□□□ -1
VPS13A-213ENST00000539950 HELBQ8NG08 1087 aaPredicted RBP8.81□□□□□ -1
VPS13A-213ENST00000539950 FOXJ1Q92949 421 aa8.81□□□□□ -1
VPS13A-213ENST00000539950 GMPR2Q9P2T1 348 aaKnown RBP8.81□□□□□ -1
VPS13A-213ENST00000539950 CTDSPL2Q05D32 466 aa8.8□□□□□ -1
VPS13A-213ENST00000539950 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.8□□□□□ -1
VPS13A-213ENST00000539950 ATP13A2Q9NQ11 1180 aa8.79□□□□□ -1
VPS13A-213ENST00000539950 WASF2Q9Y6W5 498 aa8.79□□□□□ -1
VPS13A-213ENST00000539950 C4orf48Q5BLP8 95 aa8.78□□□□□ -1
VPS13A-213ENST00000539950 ATP1B4Q9UN42 357 aaPredicted RBP8.77□□□□□ -1.01
VPS13A-213ENST00000539950 C11orf95C9JLR9 678 aaPredicted RBP8.76□□□□□ -1.01
VPS13A-213ENST00000539950 MPNDQ8N594 471 aa8.76□□□□□ -1.01
VPS13A-213ENST00000539950 FAM174AQ8TBP5 190 aa8.76□□□□□ -1.01
VPS13A-213ENST00000539950 LRRN4Q8WUT4 740 aa8.76□□□□□ -1.01
VPS13A-213ENST00000539950 AGERQ15109 404 aa8.75□□□□□ -1.01
VPS13A-213ENST00000539950 NEUROD2Q15784 382 aa8.75□□□□□ -1.01
VPS13A-213ENST00000539950 PPP2R2DQ66LE6 453 aa8.75□□□□□ -1.01
VPS13A-213ENST00000539950 NNTQ13423 1086 aa8.74□□□□□ -1.01
VPS13A-213ENST00000539950 BPHLQ86WA6 291 aaPredicted RBP8.74□□□□□ -1.01
VPS13A-213ENST00000539950 ARMC2Q8NEN0 867 aa8.74□□□□□ -1.01
VPS13A-213ENST00000539950 CAPN5O15484 640 aaPredicted RBP8.73□□□□□ -1.01
VPS13A-213ENST00000539950 BMP1P13497 986 aa8.73□□□□□ -1.01
VPS13A-213ENST00000539950 SNRPBP14678 240 aaKnown RBP8.73□□□□□ -1.01
VPS13A-213ENST00000539950 ARID5BQ14865 1188 aa8.73□□□□□ -1.01
VPS13A-213ENST00000539950 SH3RF1Q7Z6J0 888 aa8.73□□□□□ -1.01
VPS13A-213ENST00000539950 ADH1CP00326 375 aa8.72□□□□□ -1.01
VPS13A-213ENST00000539950 NBPF14Q5TI25 921 aa8.72□□□□□ -1.01
VPS13A-213ENST00000539950 SH3BP5LQ7L8J4 393 aa8.72□□□□□ -1.01
VPS13A-213ENST00000539950 CDK15Q96Q40 435 aa8.72□□□□□ -1.01
VPS13A-213ENST00000539950 AP1G2O75843 785 aa8.71□□□□□ -1.02
VPS13A-213ENST00000539950 IL27Q8NEV9 243 aa8.71□□□□□ -1.02
VPS13A-213ENST00000539950 TRIM47Q96LD4 638 aa8.71□□□□□ -1.02
VPS13A-213ENST00000539950 BRPF1P55201 1214 aaPredicted RBP8.7□□□□□ -1.02
VPS13A-213ENST00000539950 NR6A1Q15406 480 aa8.7□□□□□ -1.02
VPS13A-213ENST00000539950 TRIM46Q7Z4K8 759 aa8.7□□□□□ -1.02
VPS13A-213ENST00000539950 C1QTNF2Q9BXJ5 285 aa8.7□□□□□ -1.02
VPS13A-213ENST00000539950 SENP2Q9HC62 589 aa8.7□□□□□ -1.02
VPS13A-213ENST00000539950 MAGEB6P1A0A0J9YX57 407 aa8.69□□□□□ -1.02
VPS13A-213ENST00000539950 NR3C2P08235 984 aa8.69□□□□□ -1.02
VPS13A-213ENST00000539950 GRM5P41594 1212 aa8.69□□□□□ -1.02
VPS13A-213ENST00000539950 TPRNQ4KMQ1 711 aa8.69□□□□□ -1.02
VPS13A-213ENST00000539950 KLF16Q9BXK1 252 aaPredicted RBP8.69□□□□□ -1.02
VPS13A-213ENST00000539950 TIMP2P16035 220 aa8.68□□□□□ -1.02
VPS13A-213ENST00000539950 RFC5P40937 340 aa8.68□□□□□ -1.02
VPS13A-213ENST00000539950 WDR4P57081 412 aaKnown RBP8.68□□□□□ -1.02
VPS13A-213ENST00000539950 EPS8L1Q8TE68 723 aa8.68□□□□□ -1.02
VPS13A-213ENST00000539950 CARD14Q9BXL6 1004 aa8.68□□□□□ -1.02
VPS13A-213ENST00000539950 GOPCQ9HD26 462 aa8.68□□□□□ -1.02
VPS13A-213ENST00000539950 HMX1Q9NP08 348 aaPredicted RBP8.68□□□□□ -1.02
VPS13A-213ENST00000539950 FKBPLQ9UIM3 349 aa8.68□□□□□ -1.02
VPS13A-213ENST00000539950 USP17L8P0C7I0 530 aa8.67□□□□□ -1.02
VPS13A-213ENST00000539950 GPKOWQ92917 476 aaPredicted RBP eCLIP8.67□□□□□ -1.02
VPS13A-213ENST00000539950 NR5A1Q13285 461 aa8.66□□□□□ -1.02
VPS13A-213ENST00000539950 ERFEQ4G0M1 354 aa8.66□□□□□ -1.02
VPS13A-213ENST00000539950 LCE2AQ5TA79 106 aaPredicted RBP8.66□□□□□ -1.02
VPS13A-213ENST00000539950 TRMT44Q8IYL2 757 aaKnown RBP8.66□□□□□ -1.02
VPS13A-213ENST00000539950 KIFC2Q96AC6 838 aa8.66□□□□□ -1.02
VPS13A-213ENST00000539950 PCMTD1Q96MG8 357 aaPredicted RBP8.66□□□□□ -1.02
VPS13A-213ENST00000539950 ZIC2O95409 532 aaPredicted RBP8.65□□□□□ -1.02
VPS13A-213ENST00000539950 PDXDC2PQ6P474 469 aa8.65□□□□□ -1.02
VPS13A-213ENST00000539950 TREML4Q6UXN2 200 aa8.65□□□□□ -1.02
VPS13A-213ENST00000539950 ZFAND3Q9H8U3 227 aa8.65□□□□□ -1.02
VPS13A-213ENST00000539950 FSHRP23945 695 aa8.64□□□□□ -1.03
VPS13A-213ENST00000539950 VASH1Q7L8A9 365 aaPredicted RBP8.64□□□□□ -1.03
VPS13A-213ENST00000539950 ITPKCQ96DU7 683 aa8.64□□□□□ -1.03
VPS13A-213ENST00000539950 ZFP42Q96MM3 310 aa8.64□□□□□ -1.03
VPS13A-213ENST00000539950 OCSTAMPQ9BR26 566 aa8.64□□□□□ -1.03
VPS13A-213ENST00000539950 ARHGAP9Q9BRR9 750 aa8.64□□□□□ -1.03
VPS13A-213ENST00000539950 MAP4K5Q9Y4K4 846 aa8.64□□□□□ -1.03
VPS13A-213ENST00000539950 MRPL14Q6P1L8 145 aaKnown RBP8.63□□□□□ -1.03
VPS13A-213ENST00000539950 NFX1Q12986 1120 aaKnown RBP8.62□□□□□ -1.03
VPS13A-213ENST00000539950 ZC3H4Q9UPT8 1303 aaKnown RBP8.61□□□□□ -1.03
VPS13A-213ENST00000539950 PURBQ96QR8 312 aaKnown RBP8.61□□□□□ -1.03
VPS13A-213ENST00000539950 TRIM34Q9BYJ4 488 aa8.6□□□□□ -1.03
VPS13A-213ENST00000539950 WFS1O76024 890 aa8.59□□□□□ -1.03
VPS13A-213ENST00000539950 PTK2Q05397 1052 aa8.59□□□□□ -1.03
VPS13A-213ENST00000539950 TMEM259Q4ZIN3 620 aa8.59□□□□□ -1.03
VPS13A-213ENST00000539950 LCE2CQ5TA81 110 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms