RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 NINLQ9Y2I6 1382 aa18.09■□□□□ 0.49
YBX3-207ENST00000539204 PRAM1Q96QH2 718 aa18.09■□□□□ 0.49
YBX3-207ENST00000539204 C14orf93Q9H972 538 aaKnown RBP18.09■□□□□ 0.49
YBX3-207ENST00000539204 COL14A1Q05707 1796 aaKnown RBP18.09■□□□□ 0.49
YBX3-207ENST00000539204 ABCA3Q99758 1704 aa18.09■□□□□ 0.49
YBX3-207ENST00000539204 TNS1Q9HBL0 1735 aaKnown RBP18.09■□□□□ 0.49
YBX3-207ENST00000539204 DHX57Q6P158 1386 aaKnown RBP18.08■□□□□ 0.49
YBX3-207ENST00000539204 PPARGC1BQ86YN6 1023 aaKnown RBP18.08■□□□□ 0.48
YBX3-207ENST00000539204 STRN4Q9NRL3 753 aa18.08■□□□□ 0.48
YBX3-207ENST00000539204 POGKQ9P215 609 aa18.08■□□□□ 0.48
YBX3-207ENST00000539204 PAK3O75914 559 aaPredicted RBP18.07■□□□□ 0.48
YBX3-207ENST00000539204 KNDC1Q76NI1 1749 aa18.06■□□□□ 0.48
YBX3-207ENST00000539204 THSD7AQ9UPZ6 1657 aa18.06■□□□□ 0.48
YBX3-207ENST00000539204 ZNF784Q8NCA9 323 aaPredicted RBP18.06■□□□□ 0.48
YBX3-207ENST00000539204 USP35Q9P2H5 1018 aa18.06■□□□□ 0.48
YBX3-207ENST00000539204 EVA1CP58658 441 aa18.05■□□□□ 0.48
YBX3-207ENST00000539204 PIK3C2GO75747 1445 aa18.05■□□□□ 0.48
YBX3-207ENST00000539204 UTRNP46939 3433 aa18.04■□□□□ 0.48
YBX3-207ENST00000539204 ACIN1Q9UKV3 1341 aaKnown RBP18.04■□□□□ 0.48
YBX3-207ENST00000539204 CFAP70Q5T0N1 1121 aa18.04■□□□□ 0.48
YBX3-207ENST00000539204 ANKARQ7Z5J8 1434 aa18.04■□□□□ 0.48
YBX3-207ENST00000539204 SENP3-EIF4A1A0A087X0R7 540 aa18.03■□□□□ 0.48
YBX3-207ENST00000539204 CHRNA2Q15822 529 aa18.03■□□□□ 0.48
YBX3-207ENST00000539204 BARGINQ6ZT62 677 aa18.03■□□□□ 0.48
YBX3-207ENST00000539204 NGDNQ8NEJ9 315 aaKnown RBP18.03■□□□□ 0.48
YBX3-207ENST00000539204 SPATA31E1Q6ZUB1 1445 aa18.03■□□□□ 0.48
YBX3-207ENST00000539204 IFT172Q9UG01 1749 aa18.03■□□□□ 0.48
YBX3-207ENST00000539204 IFFO2Q5TF58 517 aa18.02■□□□□ 0.48
YBX3-207ENST00000539204 KIAA0232Q92628 1395 aa18.01■□□□□ 0.47
YBX3-207ENST00000539204 ZC3H6P61129 1189 aaKnown RBP18■□□□□ 0.47
YBX3-207ENST00000539204 HIRIP3Q9BW71 556 aaPredicted RBP18■□□□□ 0.47
YBX3-207ENST00000539204 C11orf95C9JLR9 678 aaPredicted RBP17.99■□□□□ 0.47
YBX3-207ENST00000539204 C1QTNF8P60827 252 aa17.98■□□□□ 0.47
YBX3-207ENST00000539204 TCP11L2Q8N4U5 519 aa17.98■□□□□ 0.47
YBX3-207ENST00000539204 RREB1Q92766 1687 aa17.97■□□□□ 0.47
YBX3-207ENST00000539204 TRPM3Q9HCF6 1732 aaPredicted RBP17.97■□□□□ 0.47
YBX3-207ENST00000539204 ALS2Q96Q42 1657 aa17.96■□□□□ 0.47
YBX3-207ENST00000539204 EIF3AQ14152 1382 aaKnown RBP17.96■□□□□ 0.47
YBX3-207ENST00000539204 NUP188Q5SRE5 1749 aa17.96■□□□□ 0.47
YBX3-207ENST00000539204 PRR36Q9H6K5 1346 aa17.96■□□□□ 0.46
YBX3-207ENST00000539204 WASLO00401 505 aaPredicted RBP17.95■□□□□ 0.46
YBX3-207ENST00000539204 PLSCR1O15162 318 aa17.95■□□□□ 0.46
YBX3-207ENST00000539204 LARP1Q6PKG0 1096 aaKnown RBP17.95■□□□□ 0.46
YBX3-207ENST00000539204 THRAP3Q9Y2W1 955 aaKnown RBP17.95■□□□□ 0.46
YBX3-207ENST00000539204 MINK1Q8N4C8 1332 aaPredicted RBP17.95■□□□□ 0.46
YBX3-207ENST00000539204 MPHOSPH9Q99550 1183 aa17.94■□□□□ 0.46
YBX3-207ENST00000539204 TRAK1Q9UPV9 953 aa17.94■□□□□ 0.46
YBX3-207ENST00000539204 ZBTB7AO95365 584 aa17.93■□□□□ 0.46
YBX3-207ENST00000539204 NUTM2GQ5VZR2 741 aa17.93■□□□□ 0.46
YBX3-207ENST00000539204 CAMTA1Q9Y6Y1 1673 aa17.93■□□□□ 0.46
YBX3-207ENST00000539204 BCL11BQ9C0K0 894 aaPredicted RBP17.92■□□□□ 0.46
YBX3-207ENST00000539204 SSH2Q76I76 1423 aa17.91■□□□□ 0.46
YBX3-207ENST00000539204 SYT17Q9BSW7 474 aa17.91■□□□□ 0.46
YBX3-207ENST00000539204 ATF5Q9Y2D1 282 aaPredicted RBP17.91■□□□□ 0.46
YBX3-207ENST00000539204 DLC1Q96QB1 1528 aa17.9■□□□□ 0.46
YBX3-207ENST00000539204 PTGER2P43116 358 aa17.9■□□□□ 0.46
YBX3-207ENST00000539204 PDGFDQ9GZP0 370 aaPredicted RBP17.9■□□□□ 0.46
YBX3-207ENST00000539204 ANO8Q9HCE9 1232 aaPredicted RBP17.9■□□□□ 0.46
YBX3-207ENST00000539204 NUDT16Q96DE0 195 aaKnown RBP17.88■□□□□ 0.45
YBX3-207ENST00000539204 FHDC1Q9C0D6 1143 aaPredicted RBP17.88■□□□□ 0.45
YBX3-207ENST00000539204 CRYBG1Q9Y4K1 1723 aa17.87■□□□□ 0.45
YBX3-207ENST00000539204 TULP4Q9NRJ4 1543 aa17.87■□□□□ 0.45
YBX3-207ENST00000539204 PROM2Q8N271 834 aa17.86■□□□□ 0.45
YBX3-207ENST00000539204 ABTB2Q8N961 1025 aa17.86■□□□□ 0.45
YBX3-207ENST00000539204 STK32BQ9NY57 414 aa17.85■□□□□ 0.45
YBX3-207ENST00000539204 NRKQ7Z2Y5 1582 aa17.84■□□□□ 0.45
YBX3-207ENST00000539204 OVOS2A0A0G2JMS6 1433 aa17.84■□□□□ 0.45
YBX3-207ENST00000539204 OVOS2A0A0J9YW53 1432 aa17.84■□□□□ 0.45
YBX3-207ENST00000539204 OVOS2Q6IE36 1432 aa17.84■□□□□ 0.45
YBX3-207ENST00000539204 DDB1Q16531 1140 aa17.84■□□□□ 0.45
YBX3-207ENST00000539204 MTFR1LQ9H019 292 aa17.83■□□□□ 0.44
YBX3-207ENST00000539204 CPDO75976 1380 aa17.82■□□□□ 0.44
YBX3-207ENST00000539204 SLC15A2Q16348 729 aa17.82■□□□□ 0.44
YBX3-207ENST00000539204 PTF1AQ7RTS3 328 aa17.82■□□□□ 0.44
YBX3-207ENST00000539204 ATP7BP35670 1465 aa17.82■□□□□ 0.44
YBX3-207ENST00000539204 GIGYF1O75420 1035 aaPredicted RBP17.81■□□□□ 0.44
YBX3-207ENST00000539204 GCP02774 474 aa17.81■□□□□ 0.44
YBX3-207ENST00000539204 NLRP13Q86W25 1043 aa17.81■□□□□ 0.44
YBX3-207ENST00000539204 ACEP12821 1306 aa17.8■□□□□ 0.44
YBX3-207ENST00000539204 CDK19Q9BWU1 502 aa17.8■□□□□ 0.44
YBX3-207ENST00000539204 PHRF1Q9P1Y6 1649 aaKnown RBP17.8■□□□□ 0.44
YBX3-207ENST00000539204 CASZ1Q86V15 1759 aa17.79■□□□□ 0.44
YBX3-207ENST00000539204 TXNRD1Q16881 649 aa17.79■□□□□ 0.44
YBX3-207ENST00000539204 CCDC61Q9Y6R9 512 aa17.79■□□□□ 0.44
YBX3-207ENST00000539204 CHD4Q14839 1912 aa17.78■□□□□ 0.44
YBX3-207ENST00000539204 GPR162Q16538 588 aa17.78■□□□□ 0.44
YBX3-207ENST00000539204 ARXQ96QS3 562 aa17.78■□□□□ 0.44
YBX3-207ENST00000539204 SGIP1Q9BQI5 828 aa17.78■□□□□ 0.44
YBX3-207ENST00000539204 KDM2AQ9Y2K7 1162 aa17.78■□□□□ 0.44
YBX3-207ENST00000539204 CRB1P82279 1406 aa17.78■□□□□ 0.44
YBX3-207ENST00000539204 MYOM1P52179 1685 aa17.77■□□□□ 0.44
YBX3-207ENST00000539204 PLEKHG3A1L390 1219 aa17.77■□□□□ 0.44
YBX3-207ENST00000539204 ZBTB7CA1YPR0 619 aa17.77■□□□□ 0.44
YBX3-207ENST00000539204 TOM1L2Q6ZVM7 507 aa17.77■□□□□ 0.44
YBX3-207ENST00000539204 MARCH10Q8NA82 808 aaPredicted RBP17.77■□□□□ 0.44
YBX3-207ENST00000539204 ADGRB1O14514 1584 aa17.77■□□□□ 0.44
YBX3-207ENST00000539204 PARP4Q9UKK3 1724 aaKnown RBP17.77■□□□□ 0.44
YBX3-207ENST00000539204 POLR3AO14802 1390 aaPredicted RBP17.76■□□□□ 0.43
YBX3-207ENST00000539204 RGPD3A6NKT7 1758 aaPredicted RBP17.76■□□□□ 0.43
YBX3-207ENST00000539204 RGPD4Q7Z3J3 1758 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms