RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 CALCOCO1Q9P1Z2 691 aa6.55□□□□□ -1.36
PTPRD-213ENST00000537002 PLEKHH1Q9ULM0 1364 aa6.55□□□□□ -1.36
PTPRD-213ENST00000537002 ERICH4A6NGS2 130 aa6.55□□□□□ -1.36
PTPRD-213ENST00000537002 ZNF608Q9ULD9 1512 aaPredicted RBP6.55□□□□□ -1.36
PTPRD-213ENST00000537002 PDLIM2Q96JY6 352 aa6.54□□□□□ -1.36
PTPRD-213ENST00000537002 TSPY26PQ9H489 355 aa6.54□□□□□ -1.36
PTPRD-213ENST00000537002 NUP155O75694 1391 aa6.54□□□□□ -1.36
PTPRD-213ENST00000537002 ARHGAP31Q2M1Z3 1444 aa6.54□□□□□ -1.36
PTPRD-213ENST00000537002 PPP4R3BQ5MIZ7 849 aa6.54□□□□□ -1.36
PTPRD-213ENST00000537002 MYRIPQ8NFW9 859 aa6.54□□□□□ -1.36
PTPRD-213ENST00000537002 COL17A1Q9UMD9 1497 aaPredicted RBP6.54□□□□□ -1.36
PTPRD-213ENST00000537002 SHANK2Q9UPX8 1470 aa6.54□□□□□ -1.36
PTPRD-213ENST00000537002 GTF2F1P35269 517 aaKnown RBP eCLIP6.54□□□□□ -1.36
PTPRD-213ENST00000537002 NOC3LQ8WTT2 800 aaKnown RBP6.54□□□□□ -1.36
PTPRD-213ENST00000537002 CGNQ9P2M7 1197 aaKnown RBP6.54□□□□□ -1.36
PTPRD-213ENST00000537002 DHX8Q14562 1220 aaKnown RBP6.54□□□□□ -1.36
PTPRD-213ENST00000537002 ZNF521Q96K83 1311 aa6.53□□□□□ -1.36
PTPRD-213ENST00000537002 PANK2Q9BZ23 570 aa6.53□□□□□ -1.36
PTPRD-213ENST00000537002 LNPKQ9C0E8 428 aa6.53□□□□□ -1.36
PTPRD-213ENST00000537002 SAFB2Q14151 953 aaKnown RBP eCLIP6.53□□□□□ -1.36
PTPRD-213ENST00000537002 DZIP1LQ8IYY4 767 aaKnown RBP6.53□□□□□ -1.36
PTPRD-213ENST00000537002 RABEP1Q15276 862 aa6.53□□□□□ -1.36
PTPRD-213ENST00000537002 SPAG9O60271 1321 aaKnown RBP6.53□□□□□ -1.36
PTPRD-213ENST00000537002 USP19O94966 1318 aa6.53□□□□□ -1.36
PTPRD-213ENST00000537002 PLB1Q6P1J6 1458 aa6.53□□□□□ -1.36
PTPRD-213ENST00000537002 ITSN2Q9NZM3 1697 aa6.53□□□□□ -1.36
PTPRD-213ENST00000537002 GOLGA6L19H0YKK7 550 aa6.53□□□□□ -1.36
PTPRD-213ENST00000537002 NPHP1O15259 732 aa6.53□□□□□ -1.36
PTPRD-213ENST00000537002 ADAMTS8Q9UP79 889 aa6.53□□□□□ -1.36
PTPRD-213ENST00000537002 BCAR3O75815 825 aa6.52□□□□□ -1.36
PTPRD-213ENST00000537002 TPD52L1Q16890 204 aaPredicted RBP6.52□□□□□ -1.36
PTPRD-213ENST00000537002 ADGBQ8N7X0 1667 aa6.52□□□□□ -1.37
PTPRD-213ENST00000537002 MCM2P49736 904 aa6.52□□□□□ -1.37
PTPRD-213ENST00000537002 DDX19BQ9UMR2 479 aa6.52□□□□□ -1.37
PTPRD-213ENST00000537002 NOM1Q5C9Z4 860 aaKnown RBP6.52□□□□□ -1.37
PTPRD-213ENST00000537002 RNF20Q5VTR2 975 aa6.52□□□□□ -1.37
PTPRD-213ENST00000537002 ZNF428Q96B54 188 aa6.52□□□□□ -1.37
PTPRD-213ENST00000537002 BECN2A8MW95 431 aa6.52□□□□□ -1.37
PTPRD-213ENST00000537002 DENND4BO75064 1496 aaPredicted RBP6.52□□□□□ -1.37
PTPRD-213ENST00000537002 GPS2Q13227 327 aa6.52□□□□□ -1.37
PTPRD-213ENST00000537002 TRMT2AQ8IZ69 625 aaKnown RBP6.52□□□□□ -1.37
PTPRD-213ENST00000537002 C20orf194Q5TEA3 1177 aa6.52□□□□□ -1.37
PTPRD-213ENST00000537002 SPC24Q8NBT2 197 aa6.52□□□□□ -1.37
PTPRD-213ENST00000537002 RILPL2Q969X0 211 aa6.52□□□□□ -1.37
PTPRD-213ENST00000537002 HOMER1Q86YM7 354 aa6.51□□□□□ -1.37
PTPRD-213ENST00000537002 FBXW7Q969H0 707 aa6.51□□□□□ -1.37
PTPRD-213ENST00000537002 ELL2O00472 640 aaPredicted RBP6.51□□□□□ -1.37
PTPRD-213ENST00000537002 RIPK4P57078 832 aa6.51□□□□□ -1.37
PTPRD-213ENST00000537002 HDAC1Q13547 482 aaPredicted RBP6.51□□□□□ -1.37
PTPRD-213ENST00000537002 GGT6Q6P531 493 aa6.51□□□□□ -1.37
PTPRD-213ENST00000537002 ARGLU1Q9NWB6 273 aaPredicted RBP6.51□□□□□ -1.37
PTPRD-213ENST00000537002 TNPO1Q92973 898 aaKnown RBP6.51□□□□□ -1.37
PTPRD-213ENST00000537002 TRERF1Q96PN7 1200 aa6.51□□□□□ -1.37
PTPRD-213ENST00000537002 NLRP1Q9C000 1473 aa6.51□□□□□ -1.37
PTPRD-213ENST00000537002 K7ELQ4 463 aaPredicted RBP6.51□□□□□ -1.37
PTPRD-213ENST00000537002 MNS1Q8NEH6 495 aa6.51□□□□□ -1.37
PTPRD-213ENST00000537002 ANKRD50Q9ULJ7 1429 aa6.51□□□□□ -1.37
PTPRD-213ENST00000537002 TULP1O00294 542 aaPredicted RBP6.51□□□□□ -1.37
PTPRD-213ENST00000537002 ATP6V1DQ9Y5K8 247 aa6.51□□□□□ -1.37
PTPRD-213ENST00000537002 AXDND1Q5T1B0 1012 aaPredicted RBP6.5□□□□□ -1.37
PTPRD-213ENST00000537002 WDR63Q8IWG1 891 aa6.5□□□□□ -1.37
PTPRD-213ENST00000537002 OGFRQ9NZT2 677 aa6.5□□□□□ -1.37
PTPRD-213ENST00000537002 CCDC141Q6ZP82 1450 aa6.5□□□□□ -1.37
PTPRD-213ENST00000537002 SRPK2P78362 688 aaKnown RBP6.5□□□□□ -1.37
PTPRD-213ENST00000537002 SLC4A10Q6U841 1118 aa6.5□□□□□ -1.37
PTPRD-213ENST00000537002 CDC45O75419 566 aa6.5□□□□□ -1.37
PTPRD-213ENST00000537002 EID1Q9Y6B2 187 aa6.5□□□□□ -1.37
PTPRD-213ENST00000537002 SPDYE4A6NLX3 237 aa6.5□□□□□ -1.37
PTPRD-213ENST00000537002 GORABQ5T7V8 394 aa6.5□□□□□ -1.37
PTPRD-213ENST00000537002 PZPP20742 1482 aa6.5□□□□□ -1.37
PTPRD-213ENST00000537002 HMMRO75330 724 aa6.5□□□□□ -1.37
PTPRD-213ENST00000537002 TIGD1Q96MW7 591 aa6.5□□□□□ -1.37
PTPRD-213ENST00000537002 PATL2C9JE40 543 aaKnown RBP6.5□□□□□ -1.37
PTPRD-213ENST00000537002 TUBB4AP04350 444 aa6.5□□□□□ -1.37
PTPRD-213ENST00000537002 HAP1P54257 671 aaPredicted RBP6.5□□□□□ -1.37
PTPRD-213ENST00000537002 CWC15Q9P013 229 aaKnown RBP6.5□□□□□ -1.37
PTPRD-213ENST00000537002 ABCC5O15440 1437 aa6.5□□□□□ -1.37
PTPRD-213ENST00000537002 PER1O15534 1290 aaPredicted RBP6.5□□□□□ -1.37
PTPRD-213ENST00000537002 BCORL1Q5H9F3 1711 aa6.49□□□□□ -1.37
PTPRD-213ENST00000537002 KIF2AO00139 706 aaPredicted RBP6.49□□□□□ -1.37
PTPRD-213ENST00000537002 ERBINQ96RT1 1412 aa6.49□□□□□ -1.37
PTPRD-213ENST00000537002 REC8O95072 547 aa6.49□□□□□ -1.37
PTPRD-213ENST00000537002 BMP2KLQ5H9B9 411 aa6.49□□□□□ -1.37
PTPRD-213ENST00000537002 VPS37CA5D8V6 355 aaPredicted RBP6.49□□□□□ -1.37
PTPRD-213ENST00000537002 ZSCAN20P17040 1043 aaPredicted RBP6.49□□□□□ -1.37
PTPRD-213ENST00000537002 PIBF1Q8WXW3 757 aa6.49□□□□□ -1.37
PTPRD-213ENST00000537002 CCDC27Q2M243 656 aa6.49□□□□□ -1.37
PTPRD-213ENST00000537002 CCDC112Q8NEF3 446 aa6.48□□□□□ -1.37
PTPRD-213ENST00000537002 ANO2Q9NQ90 1003 aa6.48□□□□□ -1.37
PTPRD-213ENST00000537002 USP25Q9UHP3 1055 aa6.48□□□□□ -1.37
PTPRD-213ENST00000537002 SCAF11Q99590 1463 aaKnown RBP6.48□□□□□ -1.37
PTPRD-213ENST00000537002 SYCE3A1L190 88 aa6.48□□□□□ -1.37
PTPRD-213ENST00000537002 SOX12O15370 315 aa6.48□□□□□ -1.37
PTPRD-213ENST00000537002 INTS3Q68E01 1043 aaKnown RBP6.48□□□□□ -1.37
PTPRD-213ENST00000537002 BICD2Q8TD16 824 aa6.48□□□□□ -1.37
PTPRD-213ENST00000537002 LRSAM1Q6UWE0 723 aa6.48□□□□□ -1.37
PTPRD-213ENST00000537002 CHMP4AQ9BY43 222 aa6.48□□□□□ -1.37
PTPRD-213ENST00000537002 ERBB4Q15303 1308 aa6.48□□□□□ -1.37
PTPRD-213ENST00000537002 DMRT2Q9Y5R5 561 aa6.48□□□□□ -1.37
PTPRD-213ENST00000537002 H3BQV1 296 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms