RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	TTC24	A2A3L6	582 aa	Predicted RBP	6.12	□□□□□ -1.43
CD44-238	ENST00000534296	TNFRSF10A	O00220	468 aa		6.12	□□□□□ -1.43
CD44-238	ENST00000534296	PER1	O15534	1290 aa	Predicted RBP	6.12	□□□□□ -1.43
CD44-238	ENST00000534296	USP17L8	P0C7I0	530 aa		6.12	□□□□□ -1.43
CD44-238	ENST00000534296	CTDSPL2	Q05D32	466 aa		6.12	□□□□□ -1.43
CD44-238	ENST00000534296	PKDCC	Q504Y2	493 aa		6.12	□□□□□ -1.43
CD44-238	ENST00000534296	ZNF511	Q8NB15	262 aa		6.12	□□□□□ -1.43
CD44-238	ENST00000534296	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	6.12	□□□□□ -1.43
CD44-238	ENST00000534296	ZC3H4	Q9UPT8	1303 aa	Known RBP	6.11	□□□□□ -1.43
CD44-238	ENST00000534296	LINC01559	Q495D7	138 aa		6.11	□□□□□ -1.43
CD44-238	ENST00000534296	RC3H1	Q5TC82	1133 aa	Known RBP	6.11	□□□□□ -1.43
CD44-238	ENST00000534296	PTCRA	Q6ISU1	281 aa	Predicted RBP	6.11	□□□□□ -1.43
CD44-238	ENST00000534296		Q6ZNB5	142 aa		6.11	□□□□□ -1.43
CD44-238	ENST00000534296	BPHL	Q86WA6	291 aa	Predicted RBP	6.11	□□□□□ -1.43
CD44-238	ENST00000534296	PRM3	Q9NNZ6	103 aa		6.11	□□□□□ -1.43
CD44-238	ENST00000534296	GDF9	O60383	454 aa		6.1	□□□□□ -1.43
CD44-238	ENST00000534296	VARS	P26640	1264 aa	Known RBP	6.1	□□□□□ -1.43
CD44-238	ENST00000534296	BANK1	Q8NDB2	785 aa		6.1	□□□□□ -1.43
CD44-238	ENST00000534296	BAP1	Q92560	729 aa		6.1	□□□□□ -1.43
CD44-238	ENST00000534296	FAM187A	A6NFU0	413 aa		6.09	□□□□□ -1.43
CD44-238	ENST00000534296	SH3BP2	P78314	561 aa		6.09	□□□□□ -1.43
CD44-238	ENST00000534296	SNIP1	Q8TAD8	396 aa	Known RBP	6.09	□□□□□ -1.43
CD44-238	ENST00000534296	FAM174A	Q8TBP5	190 aa		6.09	□□□□□ -1.43
CD44-238	ENST00000534296	LRRN4	Q8WUT4	740 aa		6.09	□□□□□ -1.43
CD44-238	ENST00000534296	MRGPRX2	Q96LB1	330 aa		6.09	□□□□□ -1.43
CD44-238	ENST00000534296	PKD2L1	Q9P0L9	805 aa		6.09	□□□□□ -1.43
CD44-238	ENST00000534296	FKBPL	Q9UIM3	349 aa		6.09	□□□□□ -1.43
CD44-238	ENST00000534296	DGAT1	O75907	488 aa		6.08	□□□□□ -1.44
CD44-238	ENST00000534296	SKOR1	P84550	965 aa		6.08	□□□□□ -1.44
CD44-238	ENST00000534296	TMEM132A	Q24JP5	1023 aa		6.08	□□□□□ -1.44
CD44-238	ENST00000534296	SOCS7	O14512	581 aa		6.07	□□□□□ -1.44
CD44-238	ENST00000534296	NR6A1	Q15406	480 aa		6.07	□□□□□ -1.44
CD44-238	ENST00000534296	TRIM67	Q6ZTA4	783 aa		6.07	□□□□□ -1.44
CD44-238	ENST00000534296	WASF2	Q9Y6W5	498 aa		6.07	□□□□□ -1.44
CD44-238	ENST00000534296	MAGEB6P1	A0A0J9YX57	407 aa		6.06	□□□□□ -1.44
CD44-238	ENST00000534296	ALDH1A1	P00352	501 aa		6.06	□□□□□ -1.44
CD44-238	ENST00000534296	PTK2	Q05397	1052 aa		6.06	□□□□□ -1.44
CD44-238	ENST00000534296	PDXDC2P	Q6P474	469 aa		6.06	□□□□□ -1.44
CD44-238	ENST00000534296	ZBTB33	Q86T24	672 aa		6.06	□□□□□ -1.44
CD44-238	ENST00000534296	ARHGAP9	Q9BRR9	750 aa		6.06	□□□□□ -1.44
CD44-238	ENST00000534296	GPSM3	Q9Y4H4	160 aa		6.06	□□□□□ -1.44
CD44-238	ENST00000534296	FBXO31	Q5XUX0	539 aa	Predicted RBP	6.05	□□□□□ -1.44
CD44-238	ENST00000534296	ZNF592	Q92610	1267 aa		6.05	□□□□□ -1.44
CD44-238	ENST00000534296	TOR4A	Q9NXH8	423 aa		6.05	□□□□□ -1.44
CD44-238	ENST00000534296	NDUFB9	Q9Y6M9	179 aa		6.05	□□□□□ -1.44
CD44-238	ENST00000534296	SLC10A4	Q96EP9	437 aa		6.04	□□□□□ -1.44
CD44-238	ENST00000534296	CARD14	Q9BXL6	1004 aa		6.04	□□□□□ -1.44
CD44-238	ENST00000534296	CDV3	Q9UKY7	258 aa	Known RBP	6.04	□□□□□ -1.44
CD44-238	ENST00000534296	ZNF330	Q9Y3S2	320 aa	Predicted RBP	6.04	□□□□□ -1.44
CD44-238	ENST00000534296	ARID5B	Q14865	1188 aa		6.03	□□□□□ -1.44
CD44-238	ENST00000534296	CTC1	Q2NKJ3	1217 aa		6.03	□□□□□ -1.44
CD44-238	ENST00000534296	TRAF7	Q6Q0C0	670 aa		6.03	□□□□□ -1.44
CD44-238	ENST00000534296	SH3BP5L	Q7L8J4	393 aa		6.03	□□□□□ -1.44
CD44-238	ENST00000534296	MPND	Q8N594	471 aa		6.03	□□□□□ -1.44
CD44-238	ENST00000534296	FOXJ1	Q92949	421 aa		6.03	□□□□□ -1.44
CD44-238	ENST00000534296	TRIM52	Q96A61	297 aa		6.03	□□□□□ -1.44
CD44-238	ENST00000534296	HMX1	Q9NP08	348 aa	Predicted RBP	6.03	□□□□□ -1.44
CD44-238	ENST00000534296	TLL2	Q9Y6L7	1015 aa		6.02	□□□□□ -1.45
CD44-238	ENST00000534296	SIAH2	O43255	324 aa		6.01	□□□□□ -1.45
CD44-238	ENST00000534296	ADH1C	P00326	375 aa		6.01	□□□□□ -1.45
CD44-238	ENST00000534296	FLII	Q13045	1269 aa		6.01	□□□□□ -1.45
CD44-238	ENST00000534296	NBPF20	Q3BBV1	942 aa		6.01	□□□□□ -1.45
CD44-238	ENST00000534296	VASH1	Q7L8A9	365 aa	Predicted RBP	6.01	□□□□□ -1.45
CD44-238	ENST00000534296	SH3RF1	Q7Z6J0	888 aa		6.01	□□□□□ -1.45
CD44-238	ENST00000534296	WWC1	Q8IX03	1113 aa		6.01	□□□□□ -1.45
CD44-238	ENST00000534296	TRMT44	Q8IYL2	757 aa	Known RBP	6.01	□□□□□ -1.45
CD44-238	ENST00000534296	MAP4K5	Q9Y4K4	846 aa		6.01	□□□□□ -1.45
CD44-238	ENST00000534296		J3QL48	77 aa		6	□□□□□ -1.45
CD44-238	ENST00000534296	AXIN1	O15169	862 aa		6	□□□□□ -1.45
CD44-238	ENST00000534296	SMPD1	P17405	629 aa		6	□□□□□ -1.45
CD44-238	ENST00000534296	NR5A1	Q13285	461 aa		6	□□□□□ -1.45
CD44-238	ENST00000534296	MTMR14	Q8NCE2	650 aa		6	□□□□□ -1.45
CD44-238	ENST00000534296	CDK15	Q96Q40	435 aa		6	□□□□□ -1.45
CD44-238	ENST00000534296	C1QTNF2	Q9BXJ5	285 aa		6	□□□□□ -1.45
CD44-238	ENST00000534296	TRIM34	Q9BYJ4	488 aa		6	□□□□□ -1.45
CD44-238	ENST00000534296	ZBBX	A8MT70	800 aa		5.99	□□□□□ -1.45
CD44-238	ENST00000534296	AVP	P01185	164 aa		5.99	□□□□□ -1.45
CD44-238	ENST00000534296	ERFE	Q4G0M1	354 aa		5.99	□□□□□ -1.45
CD44-238	ENST00000534296	DZIP3	Q86Y13	1208 aa	Known RBP	5.99	□□□□□ -1.45
CD44-238	ENST00000534296	CRIPAK	Q8N1N5	446 aa		5.99	□□□□□ -1.45
CD44-238	ENST00000534296	EPS8L1	Q8TE68	723 aa		5.99	□□□□□ -1.45
CD44-238	ENST00000534296	GJD4	Q96KN9	370 aa	Predicted RBP	5.99	□□□□□ -1.45
CD44-238	ENST00000534296	SNRK	Q9NRH2	765 aa		5.99	□□□□□ -1.45
CD44-238	ENST00000534296	FSHR	P23945	695 aa		5.98	□□□□□ -1.45
CD44-238	ENST00000534296	MCCD1	P59942	119 aa	Predicted RBP	5.98	□□□□□ -1.45
CD44-238	ENST00000534296	MYT1	Q01538	1121 aa		5.98	□□□□□ -1.45
CD44-238	ENST00000534296	DHX9	Q08211	1270 aa	Known RBP	5.98	□□□□□ -1.45
CD44-238	ENST00000534296	NNT	Q13423	1086 aa		5.98	□□□□□ -1.45
CD44-238	ENST00000534296	C4orf48	Q5BLP8	95 aa		5.98	□□□□□ -1.45
CD44-238	ENST00000534296	ADAM32	Q8TC27	787 aa		5.98	□□□□□ -1.45
CD44-238	ENST00000534296	RAD21	O60216	631 aa		5.97	□□□□□ -1.45
CD44-238	ENST00000534296	SMCP	P49901	116 aa	Predicted RBP	5.97	□□□□□ -1.45
CD44-238	ENST00000534296	MCM6	Q14566	821 aa		5.97	□□□□□ -1.45
CD44-238	ENST00000534296	NR1H3	Q13133	447 aa		5.96	□□□□□ -1.46
CD44-238	ENST00000534296	HPS1	Q92902	700 aa		5.96	□□□□□ -1.46
CD44-238	ENST00000534296	PGPEP1	Q9NXJ5	209 aa		5.96	□□□□□ -1.46
CD44-238	ENST00000534296	PCDHB9	Q9Y5E1	797 aa		5.96	□□□□□ -1.46
CD44-238	ENST00000534296	EMILIN1	Q9Y6C2	1016 aa		5.96	□□□□□ -1.46
CD44-238	ENST00000534296	CAPN5	O15484	640 aa	Predicted RBP	5.95	□□□□□ -1.46
CD44-238	ENST00000534296	UPP2	O95045	317 aa		5.95	□□□□□ -1.46

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