RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-215ENST00000533818 COL14A1Q05707 1796 aaKnown RBP16.36■□□□□ 0.21
CSDE1-215ENST00000533818 BCL11BQ9C0K0 894 aaPredicted RBP16.35■□□□□ 0.21
CSDE1-215ENST00000533818 PRDM11Q9NQV5 511 aa16.35■□□□□ 0.21
CSDE1-215ENST00000533818 USP35Q9P2H5 1018 aa16.35■□□□□ 0.21
CSDE1-215ENST00000533818 HSPA6P17066 643 aa16.34■□□□□ 0.21
CSDE1-215ENST00000533818 STRN4Q9NRL3 753 aa16.34■□□□□ 0.21
CSDE1-215ENST00000533818 PLSCR1O15162 318 aa16.32■□□□□ 0.2
CSDE1-215ENST00000533818 CASZ1Q86V15 1759 aa16.32■□□□□ 0.2
CSDE1-215ENST00000533818 DLC1Q96QB1 1528 aa16.32■□□□□ 0.2
CSDE1-215ENST00000533818 PLEKHH1Q9ULM0 1364 aa16.32■□□□□ 0.2
CSDE1-215ENST00000533818 APLP2Q06481 763 aa16.31■□□□□ 0.2
CSDE1-215ENST00000533818 BARGINQ6ZT62 677 aa16.31■□□□□ 0.2
CSDE1-215ENST00000533818 ARXQ96QS3 562 aa16.31■□□□□ 0.2
CSDE1-215ENST00000533818 RPGRIP1LQ68CZ1 1315 aa16.3■□□□□ 0.2
CSDE1-215ENST00000533818 CAPN15O75808 1086 aa16.3■□□□□ 0.2
CSDE1-215ENST00000533818 PMFBP1Q8TBY8 1022 aa16.3■□□□□ 0.2
CSDE1-215ENST00000533818 MTFR1LQ9H019 292 aa16.3■□□□□ 0.2
CSDE1-215ENST00000533818 NRXN1Q9ULB1 1477 aa16.29■□□□□ 0.2
CSDE1-215ENST00000533818 FMN2Q9NZ56 1722 aa16.29■□□□□ 0.2
CSDE1-215ENST00000533818 C11orf95C9JLR9 678 aaPredicted RBP16.29■□□□□ 0.2
CSDE1-215ENST00000533818 SGIP1Q9BQI5 828 aa16.29■□□□□ 0.2
CSDE1-215ENST00000533818 TECPR2O15040 1411 aa16.28■□□□□ 0.2
CSDE1-215ENST00000533818 CLTCL1P53675 1640 aa16.28■□□□□ 0.2
CSDE1-215ENST00000533818 CHRNA2Q15822 529 aa16.28■□□□□ 0.2
CSDE1-215ENST00000533818 PELP1Q8IZL8 1130 aaKnown RBP16.28■□□□□ 0.2
CSDE1-215ENST00000533818 EVA1CP58658 441 aa16.27■□□□□ 0.2
CSDE1-215ENST00000533818 STK32BQ9NY57 414 aa16.27■□□□□ 0.2
CSDE1-215ENST00000533818 ABCC11Q96J66 1382 aa16.26■□□□□ 0.19
CSDE1-215ENST00000533818 PROM2Q8N271 834 aa16.26■□□□□ 0.19
CSDE1-215ENST00000533818 MAP3K5Q99683 1374 aa16.26■□□□□ 0.19
CSDE1-215ENST00000533818 SHANK3Q9BYB0 1731 aa16.25■□□□□ 0.19
CSDE1-215ENST00000533818 SLC15A2Q16348 729 aa16.24■□□□□ 0.19
CSDE1-215ENST00000533818 TMEM132EQ6IEE7 984 aa16.24■□□□□ 0.19
CSDE1-215ENST00000533818 TCP11L2Q8N4U5 519 aa16.24■□□□□ 0.19
CSDE1-215ENST00000533818 KIAA0232Q92628 1395 aa16.24■□□□□ 0.19
CSDE1-215ENST00000533818 GPRASP1Q5JY77 1395 aa16.23■□□□□ 0.19
CSDE1-215ENST00000533818 ROCK1Q13464 1354 aa16.22■□□□□ 0.19
CSDE1-215ENST00000533818 PTF1AQ7RTS3 328 aa16.21■□□□□ 0.19
CSDE1-215ENST00000533818 GPBP1L1Q9HC44 474 aaPredicted RBP16.21■□□□□ 0.19
CSDE1-215ENST00000533818 KIF1BO60333 1816 aa16.21■□□□□ 0.19
CSDE1-215ENST00000533818 PAK3O75914 559 aaPredicted RBP16.2■□□□□ 0.18
CSDE1-215ENST00000533818 ZC3H6P61129 1189 aaKnown RBP16.2■□□□□ 0.18
CSDE1-215ENST00000533818 COL13A1Q5TAT6 717 aaPredicted RBP16.2■□□□□ 0.18
CSDE1-215ENST00000533818 LARP1Q6PKG0 1096 aaKnown RBP16.2■□□□□ 0.18
CSDE1-215ENST00000533818 KLHL34Q8N239 644 aa16.2■□□□□ 0.18
CSDE1-215ENST00000533818 RGPD8O14715 1765 aaPredicted RBP16.2■□□□□ 0.18
CSDE1-215ENST00000533818 SLC34A2O95436 690 aa16.19■□□□□ 0.18
CSDE1-215ENST00000533818 SSH2Q76I76 1423 aa16.19■□□□□ 0.18
CSDE1-215ENST00000533818 ATP10DQ9P241 1426 aa16.19■□□□□ 0.18
CSDE1-215ENST00000533818 ADGRF5Q8IZF2 1346 aa16.19■□□□□ 0.18
CSDE1-215ENST00000533818 PRELPP51888 382 aa16.18■□□□□ 0.18
CSDE1-215ENST00000533818 TXNRD1Q16881 649 aa16.18■□□□□ 0.18
CSDE1-215ENST00000533818 SIRT1Q96EB6 747 aa16.18■□□□□ 0.18
CSDE1-215ENST00000533818 THRAP3Q9Y2W1 955 aaKnown RBP16.18■□□□□ 0.18
CSDE1-215ENST00000533818 OVOS2A0A0G2JMS6 1433 aa16.18■□□□□ 0.18
CSDE1-215ENST00000533818 OVOS2A0A0J9YW53 1432 aa16.18■□□□□ 0.18
CSDE1-215ENST00000533818 OVOS2Q6IE36 1432 aa16.18■□□□□ 0.18
CSDE1-215ENST00000533818 ACIN1Q9UKV3 1341 aaKnown RBP16.18■□□□□ 0.18
CSDE1-215ENST00000533818 RGPD3A6NKT7 1758 aaPredicted RBP16.17■□□□□ 0.18
CSDE1-215ENST00000533818 RGPD4Q7Z3J3 1758 aa16.17■□□□□ 0.18
CSDE1-215ENST00000533818 GRIN3BO60391 1043 aa16.16■□□□□ 0.18
CSDE1-215ENST00000533818 SAFB2Q14151 953 aaKnown RBP eCLIP16.16■□□□□ 0.18
CSDE1-215ENST00000533818 GOLGB1Q14789 3259 aaKnown RBP16.16■□□□□ 0.18
CSDE1-215ENST00000533818 ALS2Q96Q42 1657 aa16.14■□□□□ 0.18
CSDE1-215ENST00000533818 TRPM3Q9HCF6 1732 aaPredicted RBP16.14■□□□□ 0.17
CSDE1-215ENST00000533818 YTHDC2Q9H6S0 1430 aaKnown RBP16.14■□□□□ 0.17
CSDE1-215ENST00000533818 TNS4Q8IZW8 715 aa16.14■□□□□ 0.17
CSDE1-215ENST00000533818 DNAJC5GQ8N7S2 189 aa16.14■□□□□ 0.17
CSDE1-215ENST00000533818 ZNF526Q8TF50 670 aaPredicted RBP16.14■□□□□ 0.17
CSDE1-215ENST00000533818 ANKARQ7Z5J8 1434 aa16.13■□□□□ 0.17
CSDE1-215ENST00000533818 APLP1P51693 650 aa16.13■□□□□ 0.17
CSDE1-215ENST00000533818 IFT172Q9UG01 1749 aa16.13■□□□□ 0.17
CSDE1-215ENST00000533818 NGDNQ8NEJ9 315 aaKnown RBP16.12■□□□□ 0.17
CSDE1-215ENST00000533818 PPLO60437 1756 aa16.11■□□□□ 0.17
CSDE1-215ENST00000533818 YBX3P16989 372 aaKnown RBP eCLIP16.11■□□□□ 0.172e-24■■□□□ 11.8
CSDE1-215ENST00000533818 NLGN2Q8NFZ4 835 aa16.11■□□□□ 0.17
CSDE1-215ENST00000533818 PRAM1Q96QH2 718 aa16.11■□□□□ 0.17
CSDE1-215ENST00000533818 DHX57Q6P158 1386 aaKnown RBP16.11■□□□□ 0.17
CSDE1-215ENST00000533818 ITGAEP38570 1179 aa16.1■□□□□ 0.17
CSDE1-215ENST00000533818 DDB1Q16531 1140 aa16.1■□□□□ 0.17
CSDE1-215ENST00000533818 KNDC1Q76NI1 1749 aa16.1■□□□□ 0.17
CSDE1-215ENST00000533818 POLD1P28340 1107 aa16.09■□□□□ 0.17
CSDE1-215ENST00000533818 NUTM2GQ5VZR2 741 aa16.09■□□□□ 0.17
CSDE1-215ENST00000533818 PEAK1Q9H792 1746 aa16.08■□□□□ 0.17
CSDE1-215ENST00000533818 CRYBG1Q9Y4K1 1723 aa16.08■□□□□ 0.17
CSDE1-215ENST00000533818 RGL3Q3MIN7 710 aa16.08■□□□□ 0.16
CSDE1-215ENST00000533818 POGKQ9P215 609 aa16.07■□□□□ 0.16
CSDE1-215ENST00000533818 ATP7BP35670 1465 aa16.07■□□□□ 0.16
CSDE1-215ENST00000533818 PARP4Q9UKK3 1724 aaKnown RBP16.06■□□□□ 0.16
CSDE1-215ENST00000533818 MARCH10Q8NA82 808 aaPredicted RBP16.06■□□□□ 0.16
CSDE1-215ENST00000533818 PRR36Q9H6K5 1346 aa16.05■□□□□ 0.16
CSDE1-215ENST00000533818 ANKRD30BQ9BXX2 1392 aa16.04■□□□□ 0.16
CSDE1-215ENST00000533818 SBF2Q86WG5 1849 aa16.04■□□□□ 0.16
CSDE1-215ENST00000533818 SLC16A10Q8TF71 515 aa16.04■□□□□ 0.16
CSDE1-215ENST00000533818 HIRIP3Q9BW71 556 aaPredicted RBP16.04■□□□□ 0.16
CSDE1-215ENST00000533818 AATKQ6ZMQ8 1374 aa16.03■□□□□ 0.16
CSDE1-215ENST00000533818 LOC105371045A0A1W2PR82 267 aa16.03■□□□□ 0.16
CSDE1-215ENST00000533818 PCDH10Q9P2E7 1040 aa16.03■□□□□ 0.16
CSDE1-215ENST00000533818 KIF3CO14782 793 aa16.02■□□□□ 0.16
CSDE1-215ENST00000533818 BCL9O00512 1426 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms