RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 SOCS7O14512 581 aa8.35□□□□□ -1.07
CD44-236ENST00000533222 UNC93B1Q9H1C4 597 aa8.35□□□□□ -1.07
CD44-236ENST00000533222 NDUFB9Q9Y6M9 179 aa8.35□□□□□ -1.07
CD44-236ENST00000533222 IRF5Q13568 498 aa8.34□□□□□ -1.07
CD44-236ENST00000533222 IFFO2Q5TF58 517 aa8.34□□□□□ -1.07
CD44-236ENST00000533222 ANKLE1Q8NAG6 615 aa8.34□□□□□ -1.07
CD44-236ENST00000533222 UBE2Q2Q8WVN8 375 aa8.34□□□□□ -1.07
CD44-236ENST00000533222 LINC01559Q495D7 138 aa8.33□□□□□ -1.08
CD44-236ENST00000533222 ZMYND15Q9H091 742 aa8.33□□□□□ -1.08
CD44-236ENST00000533222 A0A0G2JS52 829 aa8.32□□□□□ -1.08
CD44-236ENST00000533222 GGCXP38435 758 aa8.32□□□□□ -1.08
CD44-236ENST00000533222 PROSER2Q86WR7 435 aaPredicted RBP8.32□□□□□ -1.08
CD44-236ENST00000533222 FKBPLQ9UIM3 349 aa8.32□□□□□ -1.08
CD44-236ENST00000533222 A6NJR5 290 aa8.3□□□□□ -1.08
CD44-236ENST00000533222 APBB1O00213 710 aa8.3□□□□□ -1.08
CD44-236ENST00000533222 RAD21O60216 631 aa8.3□□□□□ -1.08
CD44-236ENST00000533222 LIAT1Q6ZQX7 453 aa8.3□□□□□ -1.08
CD44-236ENST00000533222 FNBP4Q8N3X1 1017 aaPredicted RBP8.3□□□□□ -1.08
CD44-236ENST00000533222 BAP1Q92560 729 aa8.3□□□□□ -1.08
CD44-236ENST00000533222 OCSTAMPQ9BR26 566 aa8.29□□□□□ -1.08
CD44-236ENST00000533222 POM121CA8CG34 1229 aa8.28□□□□□ -1.08
CD44-236ENST00000533222 VAC14Q08AM6 782 aa8.28□□□□□ -1.08
CD44-236ENST00000533222 TRIM32Q13049 653 aa8.28□□□□□ -1.08
CD44-236ENST00000533222 SUPT5HO00267 1087 aaKnown RBP8.27□□□□□ -1.09
CD44-236ENST00000533222 FBXO45P0C2W1 286 aa8.27□□□□□ -1.09
CD44-236ENST00000533222 SKOR1P84550 965 aa8.27□□□□□ -1.09
CD44-236ENST00000533222 C4orf48Q5BLP8 95 aa8.27□□□□□ -1.09
CD44-236ENST00000533222 FOXJ1Q92949 421 aa8.27□□□□□ -1.09
CD44-236ENST00000533222 ARID3CA6NKF2 412 aa8.26□□□□□ -1.09
CD44-236ENST00000533222 TRAK2O60296 914 aa8.26□□□□□ -1.09
CD44-236ENST00000533222 SH3BP2P78314 561 aa8.26□□□□□ -1.09
CD44-236ENST00000533222 ZNF511Q8NB15 262 aa8.26□□□□□ -1.09
CD44-236ENST00000533222 NBPF14Q5TI25 921 aa8.25□□□□□ -1.09
CD44-236ENST00000533222 SH3BP5LQ7L8J4 393 aa8.25□□□□□ -1.09
CD44-236ENST00000533222 PRM3Q9NNZ6 103 aa8.25□□□□□ -1.09
CD44-236ENST00000533222 ZBTB24O43167 697 aaPredicted RBP8.24□□□□□ -1.09
CD44-236ENST00000533222 CARD14Q9BXL6 1004 aa8.24□□□□□ -1.09
CD44-236ENST00000533222 C1orf115Q9H7X2 142 aa8.24□□□□□ -1.09
CD44-236ENST00000533222 ZC3H4Q9UPT8 1303 aaKnown RBP8.24□□□□□ -1.09
CD44-236ENST00000533222 MAGEB6P1A0A0J9YX57 407 aa8.23□□□□□ -1.09
CD44-236ENST00000533222 SLC19A1P41440 591 aa8.23□□□□□ -1.09
CD44-236ENST00000533222 ARMC2Q8NEN0 867 aa8.23□□□□□ -1.09
CD44-236ENST00000533222 ADAMTS19Q8TE59 1207 aa8.23□□□□□ -1.09
CD44-236ENST00000533222 ANP32EQ9BTT0 268 aa8.23□□□□□ -1.09
CD44-236ENST00000533222 ZNF777Q9ULD5 760 aaPredicted RBP8.23□□□□□ -1.09
CD44-236ENST00000533222 ZNF330Q9Y3S2 320 aaPredicted RBP8.23□□□□□ -1.09
CD44-236ENST00000533222 ZBBXA8MT70 800 aa8.22□□□□□ -1.09
CD44-236ENST00000533222 RPIAP49247 311 aa8.22□□□□□ -1.09
CD44-236ENST00000533222 PDXDC2PQ6P474 469 aa8.22□□□□□ -1.09
CD44-236ENST00000533222 SH3RF1Q7Z6J0 888 aa8.22□□□□□ -1.09
CD44-236ENST00000533222 PNMA1Q8ND90 353 aa8.22□□□□□ -1.09
CD44-236ENST00000533222 PRKD2Q9BZL6 878 aa8.22□□□□□ -1.09
CD44-236ENST00000533222 ZEB1P37275 1124 aaPredicted RBP8.21□□□□□ -1.1
CD44-236ENST00000533222 NR1H3Q13133 447 aa8.21□□□□□ -1.1
CD44-236ENST00000533222 AGERQ15109 404 aa8.21□□□□□ -1.1
CD44-236ENST00000533222 ADAM32Q8TC27 787 aa8.21□□□□□ -1.1
CD44-236ENST00000533222 GPKOWQ92917 476 aaPredicted RBP eCLIP8.21□□□□□ -1.1
CD44-236ENST00000533222 ARHGAP9Q9BRR9 750 aa8.21□□□□□ -1.1
CD44-236ENST00000533222 SPRYD7Q5W111 196 aa8.2□□□□□ -1.1
CD44-236ENST00000533222 PTK2Q05397 1052 aa8.19□□□□□ -1.1
CD44-236ENST00000533222 ERFEQ4G0M1 354 aa8.19□□□□□ -1.1
CD44-236ENST00000533222 WNT7BP56706 349 aa8.18□□□□□ -1.1
CD44-236ENST00000533222 WASHC4Q2M389 1173 aa8.18□□□□□ -1.1
CD44-236ENST00000533222 RC3H1Q5TC82 1133 aaKnown RBP8.18□□□□□ -1.1
CD44-236ENST00000533222 ZNF697Q5TEC3 545 aa8.18□□□□□ -1.1
CD44-236ENST00000533222 BPHLQ86WA6 291 aaPredicted RBP8.18□□□□□ -1.1
CD44-236ENST00000533222 GLMNQ92990 594 aa8.18□□□□□ -1.1
CD44-236ENST00000533222 C1QTNF2Q9BXJ5 285 aa8.18□□□□□ -1.1
CD44-236ENST00000533222 CD2BP2O95400 341 aaKnown RBP8.17□□□□□ -1.1
CD44-236ENST00000533222 ZBTB33Q86T24 672 aa8.17□□□□□ -1.1
CD44-236ENST00000533222 WWC1Q8IX03 1113 aa8.17□□□□□ -1.1
CD44-236ENST00000533222 GPSM3Q9Y4H4 160 aa8.17□□□□□ -1.1
CD44-236ENST00000533222 PCDHB9Q9Y5E1 797 aa8.17□□□□□ -1.1
CD44-236ENST00000533222 TLL2Q9Y6L7 1015 aa8.17□□□□□ -1.1
CD44-236ENST00000533222 FOXC1Q12948 553 aa8.16□□□□□ -1.1
CD44-236ENST00000533222 ERICH6BQ5W0A0 696 aa8.16□□□□□ -1.1
CD44-236ENST00000533222 EHBP1Q8NDI1 1231 aa8.16□□□□□ -1.1
CD44-236ENST00000533222 PKD2L1Q9P0L9 805 aa8.16□□□□□ -1.1
CD44-236ENST00000533222 ACIN1Q9UKV3 1341 aaKnown RBP8.15□□□□□ -1.1
CD44-236ENST00000533222 HDGFL1Q5TGJ6 251 aa8.15□□□□□ -1.1
CD44-236ENST00000533222 ZNF598Q86UK7 904 aaKnown RBP8.15□□□□□ -1.1
CD44-236ENST00000533222 MRGPRX2Q96LB1 330 aa8.15□□□□□ -1.1
CD44-236ENST00000533222 ALG2Q9H553 416 aa8.15□□□□□ -1.1
CD44-236ENST00000533222 TRIM67Q6ZTA4 783 aa8.14□□□□□ -1.11
CD44-236ENST00000533222 V9GY48 417 aaPredicted RBP8.14□□□□□ -1.11
CD44-236ENST00000533222 TNFRSF10AO00220 468 aa8.13□□□□□ -1.11
CD44-236ENST00000533222 PIK3CDO00329 1044 aa8.13□□□□□ -1.11
CD44-236ENST00000533222 WNT7AO00755 349 aa8.13□□□□□ -1.11
CD44-236ENST00000533222 EIF4G2P78344 907 aaKnown RBP eCLIP8.13□□□□□ -1.11
CD44-236ENST00000533222 UCN2Q96RP3 112 aa8.13□□□□□ -1.11
CD44-236ENST00000533222 CLSPNQ9HAW4 1339 aa8.12□□□□□ -1.11
CD44-236ENST00000533222 SIAH2O43255 324 aa8.12□□□□□ -1.11
CD44-236ENST00000533222 VARSP26640 1264 aaKnown RBP8.12□□□□□ -1.11
CD44-236ENST00000533222 DZIP3Q86Y13 1208 aaKnown RBP8.12□□□□□ -1.11
CD44-236ENST00000533222 HOMEZQ8IX15 550 aa8.12□□□□□ -1.11
CD44-236ENST00000533222 CCDC82Q8N4S0 544 aa8.12□□□□□ -1.11
CD44-236ENST00000533222 SLC10A4Q96EP9 437 aa8.12□□□□□ -1.11
CD44-236ENST00000533222 CALR3Q96L12 384 aaKnown RBP8.12□□□□□ -1.11
CD44-236ENST00000533222 GDF9O60383 454 aa8.11□□□□□ -1.11
CD44-236ENST00000533222 SEMA3FQ13275 785 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms