RNA–Protein interactions for RNA: ENST00000533209.5

SSBP3-214, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-214ENST00000533209 BRD4O60885 1362 aaPredicted RBP16.75■□□□□ 0.27
SSBP3-214ENST00000533209 ALS2Q96Q42 1657 aa16.74■□□□□ 0.27
SSBP3-214ENST00000533209 NINLQ9Y2I6 1382 aa16.74■□□□□ 0.27
SSBP3-214ENST00000533209 CABLES1Q8TDN4 633 aa16.72■□□□□ 0.27
SSBP3-214ENST00000533209 KTN1Q86UP2 1357 aaKnown RBP16.72■□□□□ 0.27
SSBP3-214ENST00000533209 HDGFL2Q7Z4V5 671 aaPredicted RBP16.71■□□□□ 0.27
SSBP3-214ENST00000533209 TERF2IPQ9NYB0 399 aa16.71■□□□□ 0.27
SSBP3-214ENST00000533209 A0A1W2PP64 1363 aa16.71■□□□□ 0.27
SSBP3-214ENST00000533209 TTC21BQ7Z4L5 1316 aa16.7■□□□□ 0.26
SSBP3-214ENST00000533209 AKAP12Q02952 1782 aa16.7■□□□□ 0.26
SSBP3-214ENST00000533209 C11orf95C9JLR9 678 aaPredicted RBP16.7■□□□□ 0.26
SSBP3-214ENST00000533209 PLEKHG5O94827 1062 aa16.7■□□□□ 0.26
SSBP3-214ENST00000533209 ADAMTS2O95450 1211 aa16.7■□□□□ 0.26
SSBP3-214ENST00000533209 MEX3CQ5U5Q3 659 aaKnown RBP16.7■□□□□ 0.26
SSBP3-214ENST00000533209 NUTM2GQ5VZR2 741 aa16.7■□□□□ 0.26
SSBP3-214ENST00000533209 ABTB2Q8N961 1025 aa16.7■□□□□ 0.26
SSBP3-214ENST00000533209 ANKRD36BQ8N2N9 1353 aa16.68■□□□□ 0.26
SSBP3-214ENST00000533209 PHF23Q9BUL5 403 aaPredicted RBP16.68■□□□□ 0.26
SSBP3-214ENST00000533209 RGS17Q9UGC6 210 aaPredicted RBP16.68■□□□□ 0.26
SSBP3-214ENST00000533209 NRKQ7Z2Y5 1582 aa16.68■□□□□ 0.26
SSBP3-214ENST00000533209 TTC21AQ8NDW8 1320 aa16.68■□□□□ 0.26
SSBP3-214ENST00000533209 EDC4Q6P2E9 1401 aaKnown RBP16.67■□□□□ 0.26
SSBP3-214ENST00000533209 MON2Q7Z3U7 1717 aa16.67■□□□□ 0.26
SSBP3-214ENST00000533209 USP19O94966 1318 aa16.67■□□□□ 0.26
SSBP3-214ENST00000533209 HAP1P54257 671 aaPredicted RBP16.66■□□□□ 0.26
SSBP3-214ENST00000533209 NLRP13Q86W25 1043 aa16.66■□□□□ 0.26
SSBP3-214ENST00000533209 C8orf37Q96NL8 207 aa16.66■□□□□ 0.26
SSBP3-214ENST00000533209 POLR3GLQ9BT43 218 aa16.66■□□□□ 0.26
SSBP3-214ENST00000533209 NLRP6P59044 892 aa16.65■□□□□ 0.26
SSBP3-214ENST00000533209 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.65■□□□□ 0.26
SSBP3-214ENST00000533209 MYOM1P52179 1685 aa16.65■□□□□ 0.26
SSBP3-214ENST00000533209 AFF2P51816 1311 aa16.65■□□□□ 0.26
SSBP3-214ENST00000533209 ABCA3Q99758 1704 aa16.65■□□□□ 0.26
SSBP3-214ENST00000533209 CRYBG1Q9Y4K1 1723 aa16.65■□□□□ 0.26
SSBP3-214ENST00000533209 ZEB1P37275 1124 aaPredicted RBP16.64■□□□□ 0.25
SSBP3-214ENST00000533209 NGLY1Q96IV0 654 aa16.64■□□□□ 0.25
SSBP3-214ENST00000533209 PIK3C2AO00443 1686 aa16.64■□□□□ 0.25
SSBP3-214ENST00000533209 KIF7Q2M1P5 1343 aa16.64■□□□□ 0.25
SSBP3-214ENST00000533209 NME9Q86XW9 330 aa16.63■□□□□ 0.25
SSBP3-214ENST00000533209 ZRANB1Q9UGI0 708 aa16.63■□□□□ 0.25
SSBP3-214ENST00000533209 FNBP4Q8N3X1 1017 aaPredicted RBP16.62■□□□□ 0.25
SSBP3-214ENST00000533209 CARD14Q9BXL6 1004 aa16.62■□□□□ 0.25
SSBP3-214ENST00000533209 USP31Q70CQ4 1352 aa16.62■□□□□ 0.25
SSBP3-214ENST00000533209 GCP02774 474 aa16.61■□□□□ 0.25
SSBP3-214ENST00000533209 PHRF1Q9P1Y6 1649 aaKnown RBP16.6■□□□□ 0.25
SSBP3-214ENST00000533209 FAM83GA6ND36 823 aa16.6■□□□□ 0.25
SSBP3-214ENST00000533209 POTEAQ6S8J7 498 aa16.6■□□□□ 0.25
SSBP3-214ENST00000533209 SLIT3O75094 1523 aa16.6■□□□□ 0.25
SSBP3-214ENST00000533209 MARF1Q9Y4F3 1742 aaKnown RBP16.59■□□□□ 0.25
SSBP3-214ENST00000533209 ZC3H6P61129 1189 aaKnown RBP16.59■□□□□ 0.25
SSBP3-214ENST00000533209 ZNF772Q68DY9 489 aaPredicted RBP16.59■□□□□ 0.25
SSBP3-214ENST00000533209 KIAA0232Q92628 1395 aa16.59■□□□□ 0.25
SSBP3-214ENST00000533209 CCDC7Q96M83 1385 aa16.59■□□□□ 0.25
SSBP3-214ENST00000533209 SLIT2O94813 1529 aa16.59■□□□□ 0.25
SSBP3-214ENST00000533209 WASHC2AQ641Q2 1341 aa16.58■□□□□ 0.24
SSBP3-214ENST00000533209 BCL9LQ86UU0 1499 aa16.58■□□□□ 0.24
SSBP3-214ENST00000533209 OVOS2A0A0J9YW53 1432 aa16.57■□□□□ 0.24
SSBP3-214ENST00000533209 OVOS2Q6IE36 1432 aa16.57■□□□□ 0.24
SSBP3-214ENST00000533209 NSD3Q9BZ95 1437 aa16.57■□□□□ 0.24
SSBP3-214ENST00000533209 CPDO75976 1380 aa16.57■□□□□ 0.24
SSBP3-214ENST00000533209 FYB1O15117 783 aa16.57■□□□□ 0.24
SSBP3-214ENST00000533209 PANK3Q9H999 370 aa16.57■□□□□ 0.24
SSBP3-214ENST00000533209 PRDM11Q9NQV5 511 aa16.57■□□□□ 0.24
SSBP3-214ENST00000533209 USP21Q9UK80 565 aa16.57■□□□□ 0.24
SSBP3-214ENST00000533209 CHRNA2Q15822 529 aa16.56■□□□□ 0.24
SSBP3-214ENST00000533209 USP54Q70EL1 1684 aa16.56■□□□□ 0.24
SSBP3-214ENST00000533209 KCNH5Q8NCM2 988 aa16.55■□□□□ 0.24
SSBP3-214ENST00000533209 UNC5CLQ8IV45 518 aa16.54■□□□□ 0.24
SSBP3-214ENST00000533209 COG3Q96JB2 828 aa16.54■□□□□ 0.24
SSBP3-214ENST00000533209 GGNBP2Q9H3C7 697 aa16.54■□□□□ 0.24
SSBP3-214ENST00000533209 QTRT2Q9H974 415 aaKnown RBP16.54■□□□□ 0.24
SSBP3-214ENST00000533209 NFAT5O94916 1531 aa16.54■□□□□ 0.24
SSBP3-214ENST00000533209 ATRNO75882 1429 aa16.53■□□□□ 0.24
SSBP3-214ENST00000533209 SOX12O15370 315 aa16.53■□□□□ 0.24
SSBP3-214ENST00000533209 ILDR2Q71H61 639 aa16.53■□□□□ 0.24
SSBP3-214ENST00000533209 ARHGEF25Q86VW2 580 aa16.53■□□□□ 0.24
SSBP3-214ENST00000533209 BTG4Q9NY30 223 aa16.53■□□□□ 0.24
SSBP3-214ENST00000533209 COL14A1Q05707 1796 aaKnown RBP16.53■□□□□ 0.24
SSBP3-214ENST00000533209 CGNL1Q0VF96 1302 aa16.52■□□□□ 0.24
SSBP3-214ENST00000533209 PLCH1Q4KWH8 1693 aa16.52■□□□□ 0.23
SSBP3-214ENST00000533209 AATKQ6ZMQ8 1374 aa16.51■□□□□ 0.23
SSBP3-214ENST00000533209 TRPC5Q9UL62 973 aaPredicted RBP16.51■□□□□ 0.23
SSBP3-214ENST00000533209 ZBTB7CA1YPR0 619 aa16.5■□□□□ 0.23
SSBP3-214ENST00000533209 NWD2Q9ULI1 1742 aa16.5■□□□□ 0.23
SSBP3-214ENST00000533209 VPS72Q15906 364 aa16.49■□□□□ 0.23
SSBP3-214ENST00000533209 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.49■□□□□ 0.23
SSBP3-214ENST00000533209 LMO7Q8WWI1 1683 aa16.49■□□□□ 0.23
SSBP3-214ENST00000533209 CAMTA1Q9Y6Y1 1673 aa16.49■□□□□ 0.23
SSBP3-214ENST00000533209 RXRBP28702 533 aa16.48■□□□□ 0.23
SSBP3-214ENST00000533209 RBM6P78332 1123 aaKnown RBP16.48■□□□□ 0.23
SSBP3-214ENST00000533209 AXIN2Q9Y2T1 843 aa16.48■□□□□ 0.23
SSBP3-214ENST00000533209 NRAPQ86VF7 1730 aa16.48■□□□□ 0.23
SSBP3-214ENST00000533209 PER1O15534 1290 aaPredicted RBP16.47■□□□□ 0.23
SSBP3-214ENST00000533209 FBLN1P23142 703 aa16.47■□□□□ 0.23
SSBP3-214ENST00000533209 GJD4Q96KN9 370 aaPredicted RBP16.47■□□□□ 0.23
SSBP3-214ENST00000533209 KNSTRNQ9Y448 316 aa16.47■□□□□ 0.23
SSBP3-214ENST00000533209 KIF20BQ96Q89 1820 aa16.47■□□□□ 0.23
SSBP3-214ENST00000533209 COL18A1P39060 1754 aa16.46■□□□□ 0.22
SSBP3-214ENST00000533209 AMER1Q5JTC6 1135 aaPredicted RBP16.45■□□□□ 0.22
SSBP3-214ENST00000533209 STRN4Q9NRL3 753 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms