RNA–Protein interactions for RNA: ENST00000530886.5

CSDE1-214, Transcript of cold shock domain containing E1, humanhuman

TSL 5 BASIC

Gene CSDE1, Length 3,459 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-214ENST00000530886 KIF3AQ9Y496 699 aa10.05□□□□□ -0.8
CSDE1-214ENST00000530886 PIBF1Q8WXW3 757 aa10.05□□□□□ -0.8
CSDE1-214ENST00000530886 SPTLC3Q9NUV7 552 aa10.05□□□□□ -0.8
CSDE1-214ENST00000530886 DDX49Q9Y6V7 483 aaKnown RBP10.05□□□□□ -0.8
CSDE1-214ENST00000530886 VGLL3A8MV65 326 aa10.05□□□□□ -0.8
CSDE1-214ENST00000530886 BAG4O95429 457 aaKnown RBP10.05□□□□□ -0.8
CSDE1-214ENST00000530886 DNTTIP2Q5QJE6 756 aaKnown RBP10.05□□□□□ -0.8
CSDE1-214ENST00000530886 OGFRQ9NZT2 677 aa10.05□□□□□ -0.8
CSDE1-214ENST00000530886 TSPYL1Q9H0U9 437 aa10.04□□□□□ -0.8
CSDE1-214ENST00000530886 CCDC66A2RUB6 948 aa10.04□□□□□ -0.8
CSDE1-214ENST00000530886 SYCP1Q15431 976 aa10.04□□□□□ -0.8
CSDE1-214ENST00000530886 PANK1Q8TE04 598 aa10.04□□□□□ -0.8
CSDE1-214ENST00000530886 ARID3AQ99856 593 aa10.04□□□□□ -0.8
CSDE1-214ENST00000530886 CGNQ9P2M7 1197 aaKnown RBP10.04□□□□□ -0.8
CSDE1-214ENST00000530886 PDCL2Q8N4E4 241 aa10.03□□□□□ -0.8
CSDE1-214ENST00000530886 TNNQ9UQP3 1299 aa10.03□□□□□ -0.8
CSDE1-214ENST00000530886 REREQ9P2R6 1566 aa10.03□□□□□ -0.8
CSDE1-214ENST00000530886 PLB1Q6P1J6 1458 aa10.03□□□□□ -0.8
CSDE1-214ENST00000530886 CTIFO43310 598 aaKnown RBP10.03□□□□□ -0.8
CSDE1-214ENST00000530886 CYP2E1P05181 493 aaPredicted RBP10.03□□□□□ -0.8
CSDE1-214ENST00000530886 IRX3P78415 501 aaPredicted RBP10.03□□□□□ -0.8
CSDE1-214ENST00000530886 FKBP5Q13451 457 aaPredicted RBP10.03□□□□□ -0.8
CSDE1-214ENST00000530886 LRSAM1Q6UWE0 723 aa10.03□□□□□ -0.8
CSDE1-214ENST00000530886 RGS22Q8NE09 1264 aa10.03□□□□□ -0.8
CSDE1-214ENST00000530886 MFAP1P55081 439 aaKnown RBP10.02□□□□□ -0.8
CSDE1-214ENST00000530886 WDR43Q15061 677 aaKnown RBP eCLIP10.02□□□□□ -0.8
CSDE1-214ENST00000530886 CREBRFQ8IUR6 639 aa10.02□□□□□ -0.8
CSDE1-214ENST00000530886 ZFP91Q96JP5 570 aaPredicted RBP10.02□□□□□ -0.8
CSDE1-214ENST00000530886 YY1AP1Q9H869 796 aa10.02□□□□□ -0.8
CSDE1-214ENST00000530886 BCL2L12Q9HB09 334 aa10.02□□□□□ -0.8
CSDE1-214ENST00000530886 LMBRD1Q9NUN5 540 aa10.02□□□□□ -0.8
CSDE1-214ENST00000530886 RARSP54136 660 aaKnown RBP10.02□□□□□ -0.81
CSDE1-214ENST00000530886 K7ELQ4 463 aaPredicted RBP10.02□□□□□ -0.81
CSDE1-214ENST00000530886 MMP14P50281 582 aa10.02□□□□□ -0.81
CSDE1-214ENST00000530886 COG6Q9Y2V7 657 aa10.02□□□□□ -0.81
CSDE1-214ENST00000530886 DEPDC5O75140 1603 aa10.02□□□□□ -0.81
CSDE1-214ENST00000530886 PRIM1P49642 420 aaKnown RBP10.01□□□□□ -0.81
CSDE1-214ENST00000530886 ERVK-7P63135 1459 aa10.01□□□□□ -0.81
CSDE1-214ENST00000530886 POLR3AO14802 1390 aaPredicted RBP10.01□□□□□ -0.81
CSDE1-214ENST00000530886 CD2BP2O95400 341 aaKnown RBP10.01□□□□□ -0.81
CSDE1-214ENST00000530886 SLFN14P0C7P3 912 aa10.01□□□□□ -0.81
CSDE1-214ENST00000530886 DNAJC5BQ9UF47 199 aa10.01□□□□□ -0.81
CSDE1-214ENST00000530886 SSFA2P28290 1259 aa10.01□□□□□ -0.81
CSDE1-214ENST00000530886 PLCD3Q8N3E9 789 aa10.01□□□□□ -0.81
CSDE1-214ENST00000530886 KDM2AQ9Y2K7 1162 aa10.01□□□□□ -0.81
CSDE1-214ENST00000530886 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.01□□□□□ -0.813e-9■■□□□ 12
CSDE1-214ENST00000530886 BRD2P25440 801 aaKnown RBP10□□□□□ -0.81
CSDE1-214ENST00000530886 WWC1Q8IX03 1113 aa10□□□□□ -0.81
CSDE1-214ENST00000530886 TIGD1Q96MW7 591 aa10□□□□□ -0.81
CSDE1-214ENST00000530886 HDAC1Q13547 482 aaPredicted RBP10□□□□□ -0.81
CSDE1-214ENST00000530886 ZNF771Q7L3S4 317 aaPredicted RBP10□□□□□ -0.81
CSDE1-214ENST00000530886 TRPM2O94759 1503 aa10□□□□□ -0.81
CSDE1-214ENST00000530886 SCAF11Q99590 1463 aaKnown RBP10□□□□□ -0.81
CSDE1-214ENST00000530886 APAF1O14727 1248 aa9.99□□□□□ -0.81
CSDE1-214ENST00000530886 NUCB2P80303 420 aa9.99□□□□□ -0.81
CSDE1-214ENST00000530886 NOLC1Q14978 699 aaKnown RBP eCLIP9.99□□□□□ -0.812e-7■□□□□ 10.8
CSDE1-214ENST00000530886 KNDC1Q76NI1 1749 aa9.99□□□□□ -0.81
CSDE1-214ENST00000530886 KIF16BQ96L93 1317 aa9.99□□□□□ -0.81
CSDE1-214ENST00000530886 ZBTB22O15209 634 aa9.99□□□□□ -0.81
CSDE1-214ENST00000530886 KLHL34Q8N239 644 aa9.99□□□□□ -0.81
CSDE1-214ENST00000530886 CAVIN1Q6NZI2 390 aaKnown RBP9.98□□□□□ -0.81
CSDE1-214ENST00000530886 CFDP1Q9UEE9 299 aaPredicted RBP9.98□□□□□ -0.81
CSDE1-214ENST00000530886 ADGRL1O94910 1474 aa9.98□□□□□ -0.81
CSDE1-214ENST00000530886 DIAPH3Q9NSV4 1193 aa9.98□□□□□ -0.81
CSDE1-214ENST00000530886 MORC2Q9Y6X9 1032 aaPredicted RBP9.98□□□□□ -0.81
CSDE1-214ENST00000530886 MED14O60244 1454 aa9.98□□□□□ -0.81
CSDE1-214ENST00000530886 MAGI1Q96QZ7 1491 aaPredicted RBP9.98□□□□□ -0.81
CSDE1-214ENST00000530886 CALCOCO1Q9P1Z2 691 aa9.98□□□□□ -0.81
CSDE1-214ENST00000530886 KCNJ4P48050 445 aa9.97□□□□□ -0.81
CSDE1-214ENST00000530886 TMF1P82094 1093 aa9.97□□□□□ -0.81
CSDE1-214ENST00000530886 UVSSAQ2YD98 709 aa9.97□□□□□ -0.81
CSDE1-214ENST00000530886 CDCA8Q53HL2 280 aa9.97□□□□□ -0.81
CSDE1-214ENST00000530886 CCDC146Q8IYE0 955 aa9.97□□□□□ -0.81
CSDE1-214ENST00000530886 NOS1P29475 1434 aa9.97□□□□□ -0.81
CSDE1-214ENST00000530886 NCBP3Q53F19 620 aaKnown RBP9.97□□□□□ -0.81
CSDE1-214ENST00000530886 SPDYE4A6NLX3 237 aa9.96□□□□□ -0.81
CSDE1-214ENST00000530886 U2AF2P26368 475 aaKnown RBP eCLIP9.96□□□□□ -0.812e-12■■■■□ 24.2
CSDE1-214ENST00000530886 SECISBP2LQ93073 1101 aaKnown RBP9.96□□□□□ -0.81
CSDE1-214ENST00000530886 EFCC1Q9HA90 598 aa9.96□□□□□ -0.81
CSDE1-214ENST00000530886 RNF216Q9NWF9 866 aaPredicted RBP9.96□□□□□ -0.81
CSDE1-214ENST00000530886 FAM53CQ9NYF3 392 aa9.96□□□□□ -0.81
CSDE1-214ENST00000530886 DDX41Q9UJV9 622 aaKnown RBP9.96□□□□□ -0.81
CSDE1-214ENST00000530886 MAP3K4Q9Y6R4 1608 aa9.96□□□□□ -0.81
CSDE1-214ENST00000530886 ZNF518AQ6AHZ1 1483 aa9.96□□□□□ -0.82
CSDE1-214ENST00000530886 TERF2Q15554 542 aa9.96□□□□□ -0.82
CSDE1-214ENST00000530886 JARID2Q92833 1246 aaPredicted RBP9.96□□□□□ -0.82
CSDE1-214ENST00000530886 GEMIN8Q9NWZ8 242 aaKnown RBP9.96□□□□□ -0.82
CSDE1-214ENST00000530886 CTNNA3Q9UI47 895 aa9.96□□□□□ -0.82
CSDE1-214ENST00000530886 AEBP2Q6ZN18 517 aaPredicted RBP9.95□□□□□ -0.82
CSDE1-214ENST00000530886 GPT2Q8TD30 523 aa9.95□□□□□ -0.82
CSDE1-214ENST00000530886 GAS2L2Q8NHY3 880 aa9.95□□□□□ -0.82
CSDE1-214ENST00000530886 TSC1Q92574 1164 aa9.95□□□□□ -0.82
CSDE1-214ENST00000530886 ATP10BO94823 1461 aa9.95□□□□□ -0.82
CSDE1-214ENST00000530886 IFT140Q96RY7 1462 aa9.95□□□□□ -0.82
CSDE1-214ENST00000530886 ANKRD26Q9UPS8 1709 aa9.95□□□□□ -0.82
CSDE1-214ENST00000530886 CAPN2P17655 700 aa9.95□□□□□ -0.82
CSDE1-214ENST00000530886 CCDC27Q2M243 656 aa9.95□□□□□ -0.82
CSDE1-214ENST00000530886 CWC22Q9HCG8 908 aaKnown RBP9.95□□□□□ -0.82
CSDE1-214ENST00000530886 VWDEQ8N2E2 1590 aa9.94□□□□□ -0.82
CSDE1-214ENST00000530886 MBD3O95983 291 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms