RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 PHF8Q9UPP1 1060 aa16.29■□□□□ 0.2
NEDD8-204ENST00000526430 PLEKHH1Q9ULM0 1364 aa16.28■□□□□ 0.2
NEDD8-204ENST00000526430 KCNQ2O43526 872 aa16.28■□□□□ 0.2
NEDD8-204ENST00000526430 TRIM37O94972 964 aa16.28■□□□□ 0.2
NEDD8-204ENST00000526430 NBPF8Q3BBV2 869 aa16.28■□□□□ 0.2
NEDD8-204ENST00000526430 NBPF14Q5TI25 921 aa16.28■□□□□ 0.2
NEDD8-204ENST00000526430 APBA3O96018 575 aa16.27■□□□□ 0.2
NEDD8-204ENST00000526430 NRKQ7Z2Y5 1582 aa16.26■□□□□ 0.19
NEDD8-204ENST00000526430 SBF2Q86WG5 1849 aa16.25■□□□□ 0.19
NEDD8-204ENST00000526430 MYOM1P52179 1685 aa16.24■□□□□ 0.19
NEDD8-204ENST00000526430 C1QTNF8P60827 252 aa16.24■□□□□ 0.19
NEDD8-204ENST00000526430 LMOD2Q6P5Q4 547 aa16.24■□□□□ 0.19
NEDD8-204ENST00000526430 SPATA31A1Q5TZJ5 1347 aa16.23■□□□□ 0.19
NEDD8-204ENST00000526430 PLEKHG5O94827 1062 aa16.23■□□□□ 0.19
NEDD8-204ENST00000526430 STK26Q9P289 416 aa16.23■□□□□ 0.19
NEDD8-204ENST00000526430 PHRF1Q9P1Y6 1649 aaKnown RBP16.23■□□□□ 0.19
NEDD8-204ENST00000526430 ANKARQ7Z5J8 1434 aa16.22■□□□□ 0.19
NEDD8-204ENST00000526430 YTHDC2Q9H6S0 1430 aaKnown RBP16.22■□□□□ 0.19
NEDD8-204ENST00000526430 SIRT1Q96EB6 747 aa16.22■□□□□ 0.19
NEDD8-204ENST00000526430 CEP350Q5VT06 3117 aa16.22■□□□□ 0.19
NEDD8-204ENST00000526430 PARP4Q9UKK3 1724 aaKnown RBP16.22■□□□□ 0.19
NEDD8-204ENST00000526430 ADGRF5Q8IZF2 1346 aa16.2■□□□□ 0.18
NEDD8-204ENST00000526430 PIK3C2GO75747 1445 aa16.2■□□□□ 0.18
NEDD8-204ENST00000526430 RAB3GAP2Q9H2M9 1393 aa16.2■□□□□ 0.18
NEDD8-204ENST00000526430 PEAK1Q9H792 1746 aa16.19■□□□□ 0.18
NEDD8-204ENST00000526430 ANKRD30BQ9BXX2 1392 aa16.18■□□□□ 0.18
NEDD8-204ENST00000526430 BARGINQ6ZT62 677 aa16.16■□□□□ 0.18
NEDD8-204ENST00000526430 PRDM11Q9NQV5 511 aa16.16■□□□□ 0.18
NEDD8-204ENST00000526430 ITSN1Q15811 1721 aa16.16■□□□□ 0.18
NEDD8-204ENST00000526430 GPRASP1Q5JY77 1395 aa16.15■□□□□ 0.18
NEDD8-204ENST00000526430 TMEM132EQ6IEE7 984 aa16.15■□□□□ 0.18
NEDD8-204ENST00000526430 SPATA31E1Q6ZUB1 1445 aa16.15■□□□□ 0.18
NEDD8-204ENST00000526430 DLC1Q96QB1 1528 aa16.14■□□□□ 0.17
NEDD8-204ENST00000526430 C11orf95C9JLR9 678 aaPredicted RBP16.13■□□□□ 0.17
NEDD8-204ENST00000526430 PDE3BQ13370 1112 aa16.13■□□□□ 0.17
NEDD8-204ENST00000526430 PMFBP1Q8TBY8 1022 aa16.13■□□□□ 0.17
NEDD8-204ENST00000526430 LMO7Q8WWI1 1683 aa16.13■□□□□ 0.17
NEDD8-204ENST00000526430 ACIN1Q9UKV3 1341 aaKnown RBP16.12■□□□□ 0.17
NEDD8-204ENST00000526430 KIAA0232Q92628 1395 aa16.12■□□□□ 0.17
NEDD8-204ENST00000526430 SSH2Q76I76 1423 aa16.11■□□□□ 0.17
NEDD8-204ENST00000526430 PCGF6Q9BYE7 350 aa16.11■□□□□ 0.17
NEDD8-204ENST00000526430 TULP4Q9NRJ4 1543 aa16.1■□□□□ 0.17
NEDD8-204ENST00000526430 PLSCR1O15162 318 aa16.1■□□□□ 0.17
NEDD8-204ENST00000526430 PTGER2P43116 358 aa16.1■□□□□ 0.17
NEDD8-204ENST00000526430 MPHOSPH9Q99550 1183 aa16.1■□□□□ 0.17
NEDD8-204ENST00000526430 EIF3AQ14152 1382 aaKnown RBP16.1■□□□□ 0.17
NEDD8-204ENST00000526430 AKAP12Q02952 1782 aa16.1■□□□□ 0.17
NEDD8-204ENST00000526430 WNK3Q9BYP7 1800 aa16.1■□□□□ 0.17
NEDD8-204ENST00000526430 DHX57Q6P158 1386 aaKnown RBP16.09■□□□□ 0.17
NEDD8-204ENST00000526430 LRRC37A3O60309 1634 aa16.08■□□□□ 0.17
NEDD8-204ENST00000526430 ANO8Q9HCE9 1232 aaPredicted RBP16.08■□□□□ 0.16
NEDD8-204ENST00000526430 STRN4Q9NRL3 753 aa16.08■□□□□ 0.16
NEDD8-204ENST00000526430 OVOS2A0A0G2JMS6 1433 aa16.08■□□□□ 0.16
NEDD8-204ENST00000526430 OVOS2A0A0J9YW53 1432 aa16.08■□□□□ 0.16
NEDD8-204ENST00000526430 OVOS2Q6IE36 1432 aa16.08■□□□□ 0.16
NEDD8-204ENST00000526430 ATP7BP35670 1465 aa16.08■□□□□ 0.16
NEDD8-204ENST00000526430 SYT17Q9BSW7 474 aa16.07■□□□□ 0.16
NEDD8-204ENST00000526430 PRAM1Q96QH2 718 aa16.06■□□□□ 0.16
NEDD8-204ENST00000526430 C14orf93Q9H972 538 aaKnown RBP16.06■□□□□ 0.16
NEDD8-204ENST00000526430 THRAP3Q9Y2W1 955 aaKnown RBP16.06■□□□□ 0.16
NEDD8-204ENST00000526430 SHANK3Q9BYB0 1731 aa16.05■□□□□ 0.16
NEDD8-204ENST00000526430 MAP3K5Q99683 1374 aa16.05■□□□□ 0.16
NEDD8-204ENST00000526430 GIGYF1O75420 1035 aaPredicted RBP16.05■□□□□ 0.16
NEDD8-204ENST00000526430 CHRNA2Q15822 529 aa16.05■□□□□ 0.16
NEDD8-204ENST00000526430 TCP11L2Q8N4U5 519 aa16.05■□□□□ 0.16
NEDD8-204ENST00000526430 SLC4A1APQ9BWU0 796 aaKnown RBP16.05■□□□□ 0.16
NEDD8-204ENST00000526430 FHDC1Q9C0D6 1143 aaPredicted RBP16.05■□□□□ 0.16
NEDD8-204ENST00000526430 USP35Q9P2H5 1018 aa16.05■□□□□ 0.16
NEDD8-204ENST00000526430 PDGFDQ9GZP0 370 aaPredicted RBP16.04■□□□□ 0.16
NEDD8-204ENST00000526430 PRR36Q9H6K5 1346 aa16.03■□□□□ 0.16
NEDD8-204ENST00000526430 ZBTB7AO95365 584 aa16.03■□□□□ 0.16
NEDD8-204ENST00000526430 RGL3Q3MIN7 710 aa16.03■□□□□ 0.16
NEDD8-204ENST00000526430 SAFB2Q14151 953 aaKnown RBP eCLIP16.02■□□□□ 0.16
NEDD8-204ENST00000526430 SGIP1Q9BQI5 828 aa16.02■□□□□ 0.16
NEDD8-204ENST00000526430 COL24A1Q17RW2 1714 aa16.02■□□□□ 0.15
NEDD8-204ENST00000526430 CPDO75976 1380 aa16.01■□□□□ 0.15
NEDD8-204ENST00000526430 PAK3O75914 559 aaPredicted RBP16.01■□□□□ 0.15
NEDD8-204ENST00000526430 EVA1CP58658 441 aa16.01■□□□□ 0.15
NEDD8-204ENST00000526430 TOPAZ1Q8N9V7 1692 aa16.01■□□□□ 0.15
NEDD8-204ENST00000526430 ADGRB1O14514 1584 aa16■□□□□ 0.15
NEDD8-204ENST00000526430 GOLGB1Q14789 3259 aaKnown RBP16■□□□□ 0.15
NEDD8-204ENST00000526430 LARP1Q6PKG0 1096 aaKnown RBP16■□□□□ 0.15
NEDD8-204ENST00000526430 MTFR1LQ9H019 292 aa16■□□□□ 0.15
NEDD8-204ENST00000526430 BCL9O00512 1426 aa16■□□□□ 0.15
NEDD8-204ENST00000526430 ZC3H6P61129 1189 aaKnown RBP15.99■□□□□ 0.15
NEDD8-204ENST00000526430 NGDNQ8NEJ9 315 aaKnown RBP15.99■□□□□ 0.15
NEDD8-204ENST00000526430 BCL11BQ9C0K0 894 aaPredicted RBP15.99■□□□□ 0.15
NEDD8-204ENST00000526430 POGKQ9P215 609 aa15.99■□□□□ 0.15
NEDD8-204ENST00000526430 ATF5Q9Y2D1 282 aaPredicted RBP15.99■□□□□ 0.15
NEDD8-204ENST00000526430 QSER1Q2KHR3 1735 aa15.99■□□□□ 0.15
NEDD8-204ENST00000526430 COL5A2P05997 1499 aaPredicted RBP15.98■□□□□ 0.15
NEDD8-204ENST00000526430 PROM2Q8N271 834 aa15.98■□□□□ 0.15
NEDD8-204ENST00000526430 AATKQ6ZMQ8 1374 aa15.98■□□□□ 0.15
NEDD8-204ENST00000526430 CRB1P82279 1406 aa15.97■□□□□ 0.15
NEDD8-204ENST00000526430 PAPPAQ13219 1627 aa15.97■□□□□ 0.15
NEDD8-204ENST00000526430 CFAP70Q5T0N1 1121 aa15.96■□□□□ 0.15
NEDD8-204ENST00000526430 STK32BQ9NY57 414 aa15.96■□□□□ 0.15
NEDD8-204ENST00000526430 ARHGEF28Q8N1W1 1705 aaKnown RBP15.96■□□□□ 0.15
NEDD8-204ENST00000526430 WASLO00401 505 aaPredicted RBP15.95■□□□□ 0.14
NEDD8-204ENST00000526430 SLC15A2Q16348 729 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms