RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 BAP1Q92560 729 aa8.45□□□□□ -1.06
CD44-219ENST00000525685 MAP10Q9P2G4 905 aa8.45□□□□□ -1.06
CD44-219ENST00000525685 J3QL48 77 aa8.44□□□□□ -1.06
CD44-219ENST00000525685 CTHP32929 405 aa8.44□□□□□ -1.06
CD44-219ENST00000525685 LINC01559Q495D7 138 aa8.44□□□□□ -1.06
CD44-219ENST00000525685 PROCA1Q8NCQ7 364 aaPredicted RBP8.44□□□□□ -1.06
CD44-219ENST00000525685 TSC1Q92574 1164 aa8.44□□□□□ -1.06
CD44-219ENST00000525685 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.44□□□□□ -1.06
CD44-219ENST00000525685 AAASQ9NRG9 546 aa8.44□□□□□ -1.06
CD44-219ENST00000525685 ST8SIA5O15466 376 aa8.43□□□□□ -1.06
CD44-219ENST00000525685 SIAH2O43255 324 aa8.43□□□□□ -1.06
CD44-219ENST00000525685 FBXO31Q5XUX0 539 aaPredicted RBP8.43□□□□□ -1.06
CD44-219ENST00000525685 CRIPAKQ8N1N5 446 aa8.43□□□□□ -1.06
CD44-219ENST00000525685 ZNF511Q8NB15 262 aa8.43□□□□□ -1.06
CD44-219ENST00000525685 EHBP1Q8NDI1 1231 aa8.43□□□□□ -1.06
CD44-219ENST00000525685 HELBQ8NG08 1087 aaPredicted RBP8.43□□□□□ -1.06
CD44-219ENST00000525685 NEUROD2Q15784 382 aa8.42□□□□□ -1.06
CD44-219ENST00000525685 SMCPP49901 116 aaPredicted RBP8.4□□□□□ -1.06
CD44-219ENST00000525685 BRPF1P55201 1214 aaPredicted RBP8.4□□□□□ -1.06
CD44-219ENST00000525685 CTC1Q2NKJ3 1217 aa8.4□□□□□ -1.06
CD44-219ENST00000525685 PPP2R2DQ66LE6 453 aa8.4□□□□□ -1.06
CD44-219ENST00000525685 CTDSPL2Q05D32 466 aa8.39□□□□□ -1.07
CD44-219ENST00000525685 AXIN1O15169 862 aa8.38□□□□□ -1.07
CD44-219ENST00000525685 ALDH1A1P00352 501 aa8.38□□□□□ -1.07
CD44-219ENST00000525685 ZNF787Q6DD87 383 aa8.38□□□□□ -1.07
CD44-219ENST00000525685 HPS1Q92902 700 aa8.38□□□□□ -1.07
CD44-219ENST00000525685 VARSP26640 1264 aaKnown RBP8.37□□□□□ -1.07
CD44-219ENST00000525685 GOPCQ9HD26 462 aa8.37□□□□□ -1.07
CD44-219ENST00000525685 DACH1Q9UI36 760 aa8.37□□□□□ -1.07
CD44-219ENST00000525685 POTECB2RU33 542 aa8.36□□□□□ -1.07
CD44-219ENST00000525685 IL27Q8NEV9 243 aa8.36□□□□□ -1.07
CD44-219ENST00000525685 FOXJ1Q92949 421 aa8.36□□□□□ -1.07
CD44-219ENST00000525685 ATP1B4Q9UN42 357 aaPredicted RBP8.36□□□□□ -1.07
CD44-219ENST00000525685 TLL2Q9Y6L7 1015 aa8.36□□□□□ -1.07
CD44-219ENST00000525685 MPNDQ8N594 471 aa8.35□□□□□ -1.07
CD44-219ENST00000525685 ARMC2Q8NEN0 867 aa8.35□□□□□ -1.07
CD44-219ENST00000525685 LRRN4Q8WUT4 740 aa8.35□□□□□ -1.07
CD44-219ENST00000525685 C4orf48Q5BLP8 95 aa8.34□□□□□ -1.07
CD44-219ENST00000525685 BPHLQ86WA6 291 aaPredicted RBP8.33□□□□□ -1.08
CD44-219ENST00000525685 FAM174AQ8TBP5 190 aa8.33□□□□□ -1.08
CD44-219ENST00000525685 PCMTD1Q96MG8 357 aaPredicted RBP8.33□□□□□ -1.08
CD44-219ENST00000525685 WASF2Q9Y6W5 498 aa8.33□□□□□ -1.08
CD44-219ENST00000525685 AP1G2O75843 785 aa8.32□□□□□ -1.08
CD44-219ENST00000525685 RFC5P40937 340 aa8.32□□□□□ -1.08
CD44-219ENST00000525685 NBPF14Q5TI25 921 aa8.32□□□□□ -1.08
CD44-219ENST00000525685 SH3RF1Q7Z6J0 888 aa8.32□□□□□ -1.08
CD44-219ENST00000525685 AGERQ15109 404 aa8.31□□□□□ -1.08
CD44-219ENST00000525685 SH3BP5LQ7L8J4 393 aa8.31□□□□□ -1.08
CD44-219ENST00000525685 CDK15Q96Q40 435 aa8.31□□□□□ -1.08
CD44-219ENST00000525685 GPKOWQ92917 476 aaPredicted RBP eCLIP8.3□□□□□ -1.08
CD44-219ENST00000525685 C1QTNF2Q9BXJ5 285 aa8.3□□□□□ -1.08
CD44-219ENST00000525685 GMPR2Q9P2T1 348 aaKnown RBP8.3□□□□□ -1.08
CD44-219ENST00000525685 USP17L8P0C7I0 530 aa8.29□□□□□ -1.08
CD44-219ENST00000525685 NR6A1Q15406 480 aa8.29□□□□□ -1.08
CD44-219ENST00000525685 ATP13A2Q9NQ11 1180 aa8.29□□□□□ -1.08
CD44-219ENST00000525685 ADH1CP00326 375 aa8.28□□□□□ -1.08
CD44-219ENST00000525685 NNTQ13423 1086 aa8.28□□□□□ -1.08
CD44-219ENST00000525685 HMX1Q9NP08 348 aaPredicted RBP8.28□□□□□ -1.08
CD44-219ENST00000525685 FKBPLQ9UIM3 349 aa8.28□□□□□ -1.08
CD44-219ENST00000525685 PDXDC2PQ6P474 469 aa8.27□□□□□ -1.09
CD44-219ENST00000525685 EPS8L1Q8TE68 723 aa8.27□□□□□ -1.09
CD44-219ENST00000525685 MAGEB6P1A0A0J9YX57 407 aa8.26□□□□□ -1.09
CD44-219ENST00000525685 CAPN5O15484 640 aaPredicted RBP8.26□□□□□ -1.09
CD44-219ENST00000525685 GRM5P41594 1212 aa8.26□□□□□ -1.09
CD44-219ENST00000525685 ARID5BQ14865 1188 aa8.26□□□□□ -1.09
CD44-219ENST00000525685 TRMT44Q8IYL2 757 aaKnown RBP8.26□□□□□ -1.09
CD44-219ENST00000525685 ZNF775Q96BV0 537 aaPredicted RBP8.26□□□□□ -1.09
CD44-219ENST00000525685 ZC3H4Q9UPT8 1303 aaKnown RBP8.26□□□□□ -1.09
CD44-219ENST00000525685 C11orf95C9JLR9 678 aaPredicted RBP8.25□□□□□ -1.09
CD44-219ENST00000525685 TMEM259Q4ZIN3 620 aa8.25□□□□□ -1.09
CD44-219ENST00000525685 KLF16Q9BXK1 252 aaPredicted RBP8.25□□□□□ -1.09
CD44-219ENST00000525685 TIMP2P16035 220 aa8.24□□□□□ -1.09
CD44-219ENST00000525685 NR5A1Q13285 461 aa8.24□□□□□ -1.09
CD44-219ENST00000525685 ERFEQ4G0M1 354 aa8.24□□□□□ -1.09
CD44-219ENST00000525685 CARD14Q9BXL6 1004 aa8.24□□□□□ -1.09
CD44-219ENST00000525685 MAP4K5Q9Y4K4 846 aa8.24□□□□□ -1.09
CD44-219ENST00000525685 NR3C2P08235 984 aa8.23□□□□□ -1.09
CD44-219ENST00000525685 WDR4P57081 412 aaKnown RBP8.23□□□□□ -1.09
CD44-219ENST00000525685 TRIM46Q7Z4K8 759 aa8.23□□□□□ -1.09
CD44-219ENST00000525685 TRIM47Q96LD4 638 aa8.23□□□□□ -1.09
CD44-219ENST00000525685 OCSTAMPQ9BR26 566 aa8.23□□□□□ -1.09
CD44-219ENST00000525685 ARHGAP9Q9BRR9 750 aa8.23□□□□□ -1.09
CD44-219ENST00000525685 TRIM34Q9BYJ4 488 aa8.23□□□□□ -1.09
CD44-219ENST00000525685 SENP2Q9HC62 589 aa8.23□□□□□ -1.09
CD44-219ENST00000525685 BMP1P13497 986 aa8.22□□□□□ -1.09
CD44-219ENST00000525685 SNRPBP14678 240 aaKnown RBP8.21□□□□□ -1.1
CD44-219ENST00000525685 VASH1Q7L8A9 365 aaPredicted RBP8.21□□□□□ -1.1
CD44-219ENST00000525685 GPSM3Q9Y4H4 160 aa8.21□□□□□ -1.1
CD44-219ENST00000525685 FSHRP23945 695 aa8.2□□□□□ -1.1
CD44-219ENST00000525685 PTK2Q05397 1052 aa8.2□□□□□ -1.1
CD44-219ENST00000525685 KIFC2Q96AC6 838 aa8.2□□□□□ -1.1
CD44-219ENST00000525685 ITPKCQ96DU7 683 aa8.2□□□□□ -1.1
CD44-219ENST00000525685 ZIC2O95409 532 aaPredicted RBP8.19□□□□□ -1.1
CD44-219ENST00000525685 ZBTB33Q86T24 672 aa8.19□□□□□ -1.1
CD44-219ENST00000525685 PNMA1Q8ND90 353 aa8.19□□□□□ -1.1
CD44-219ENST00000525685 GJD4Q96KN9 370 aaPredicted RBP8.19□□□□□ -1.1
CD44-219ENST00000525685 ZFAND3Q9H8U3 227 aa8.19□□□□□ -1.1
CD44-219ENST00000525685 ADAM32Q8TC27 787 aa8.18□□□□□ -1.1
CD44-219ENST00000525685 SLC10A4Q96EP9 437 aa8.18□□□□□ -1.1
CD44-219ENST00000525685 MRPL14Q6P1L8 145 aaKnown RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms