RNA–Protein interactions for RNA: ENST00000524652.1

CSDE1-208, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-208ENST00000524652 VARSP26640 1264 aaKnown RBP7.02□□□□□ -1.29
CSDE1-208ENST00000524652 CTHP32929 405 aa7.02□□□□□ -1.29
CSDE1-208ENST00000524652 QPCTQ16769 361 aa7.02□□□□□ -1.29
CSDE1-208ENST00000524652 LINC01559Q495D7 138 aa7.02□□□□□ -1.29
CSDE1-208ENST00000524652 MPNDQ8N594 471 aa7.02□□□□□ -1.29
CSDE1-208ENST00000524652 NUTM2BA6NNL0 878 aaPredicted RBP7.01□□□□□ -1.29
CSDE1-208ENST00000524652 NUTM2EB1AL46 878 aaPredicted RBP7.01□□□□□ -1.29
CSDE1-208ENST00000524652 NUTM2DQ5VT03 806 aaPredicted RBP7.01□□□□□ -1.29
CSDE1-208ENST00000524652 NUTM2AQ8IVF1 878 aaPredicted RBP7.01□□□□□ -1.29
CSDE1-208ENST00000524652 HELBQ8NG08 1087 aaPredicted RBP7.01□□□□□ -1.29
CSDE1-208ENST00000524652 ATP13A2Q9NQ11 1180 aa7.01□□□□□ -1.29
CSDE1-208ENST00000524652 MAP10Q9P2G4 905 aa7.01□□□□□ -1.29
CSDE1-208ENST00000524652 GMPR2Q9P2T1 348 aaKnown RBP7.01□□□□□ -1.29
CSDE1-208ENST00000524652 WASF2Q9Y6W5 498 aa7□□□□□ -1.29
CSDE1-208ENST00000524652 PLEKHG3A1L390 1219 aa6.99□□□□□ -1.29
CSDE1-208ENST00000524652 C11orf95C9JLR9 678 aaPredicted RBP6.99□□□□□ -1.29
CSDE1-208ENST00000524652 PER1O15534 1290 aaPredicted RBP6.99□□□□□ -1.29
CSDE1-208ENST00000524652 TSC1Q92574 1164 aa6.99□□□□□ -1.29
CSDE1-208ENST00000524652 SENP2Q9HC62 589 aa6.99□□□□□ -1.29
CSDE1-208ENST00000524652 DDRGK1Q96HY6 314 aa6.98□□□□□ -1.29
CSDE1-208ENST00000524652 KDM4CQ9H3R0 1056 aa6.98□□□□□ -1.29
CSDE1-208ENST00000524652 TLL2Q9Y6L7 1015 aa6.98□□□□□ -1.29
CSDE1-208ENST00000524652 RTL5Q5HYW3 569 aaPredicted RBP6.97□□□□□ -1.29
CSDE1-208ENST00000524652 ARMC2Q8NEN0 867 aa6.97□□□□□ -1.29
CSDE1-208ENST00000524652 FAM174AQ8TBP5 190 aa6.97□□□□□ -1.29
CSDE1-208ENST00000524652 KIFC2Q96AC6 838 aa6.97□□□□□ -1.29
CSDE1-208ENST00000524652 TRIM47Q96LD4 638 aa6.97□□□□□ -1.29
CSDE1-208ENST00000524652 SKIV2LQ15477 1246 aaKnown RBP6.96□□□□□ -1.3
CSDE1-208ENST00000524652 SH3D19Q5HYK7 790 aa6.96□□□□□ -1.3
CSDE1-208ENST00000524652 GPBP1L1Q9HC44 474 aaPredicted RBP6.96□□□□□ -1.3
CSDE1-208ENST00000524652 POLR3EQ9NVU0 708 aa6.96□□□□□ -1.3
CSDE1-208ENST00000524652 CAPN5O15484 640 aaPredicted RBP6.95□□□□□ -1.3
CSDE1-208ENST00000524652 NBPF14Q5TI25 921 aa6.95□□□□□ -1.3
CSDE1-208ENST00000524652 BPHLQ86WA6 291 aaPredicted RBP6.95□□□□□ -1.3
CSDE1-208ENST00000524652 ADH1CP00326 375 aa6.94□□□□□ -1.3
CSDE1-208ENST00000524652 NNTQ13423 1086 aa6.94□□□□□ -1.3
CSDE1-208ENST00000524652 SH3RF1Q7Z6J0 888 aa6.94□□□□□ -1.3
CSDE1-208ENST00000524652 FOXJ1Q92949 421 aa6.94□□□□□ -1.3
CSDE1-208ENST00000524652 CDK15Q96Q40 435 aa6.94□□□□□ -1.3
CSDE1-208ENST00000524652 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.94□□□□□ -1.3
CSDE1-208ENST00000524652 NISCHQ9Y2I1 1504 aa6.93□□□□□ -1.3
CSDE1-208ENST00000524652 AGERQ15109 404 aa6.93□□□□□ -1.3
CSDE1-208ENST00000524652 C4orf48Q5BLP8 95 aa6.93□□□□□ -1.3
CSDE1-208ENST00000524652 LCE2AQ5TA79 106 aaPredicted RBP6.93□□□□□ -1.3
CSDE1-208ENST00000524652 TREML4Q6UXN2 200 aa6.93□□□□□ -1.3
CSDE1-208ENST00000524652 GPKOWQ92917 476 aaPredicted RBP eCLIP6.93□□□□□ -1.3
CSDE1-208ENST00000524652 FAM117AQ9C073 453 aa6.93□□□□□ -1.3
CSDE1-208ENST00000524652 SNRPBP14678 240 aaKnown RBP6.92□□□□□ -1.3
CSDE1-208ENST00000524652 PPP2R2DQ66LE6 453 aa6.92□□□□□ -1.3
CSDE1-208ENST00000524652 BMP1P13497 986 aa6.91□□□□□ -1.3
CSDE1-208ENST00000524652 CTDSPL2Q05D32 466 aa6.91□□□□□ -1.3
CSDE1-208ENST00000524652 NR5A1Q13285 461 aa6.91□□□□□ -1.3
CSDE1-208ENST00000524652 SH3BP5LQ7L8J4 393 aa6.91□□□□□ -1.3
CSDE1-208ENST00000524652 C1QTNF2Q9BXJ5 285 aa6.91□□□□□ -1.3
CSDE1-208ENST00000524652 TIMP2P16035 220 aa6.9□□□□□ -1.3
CSDE1-208ENST00000524652 TRIM46Q7Z4K8 759 aa6.9□□□□□ -1.3
CSDE1-208ENST00000524652 TRMT44Q8IYL2 757 aaKnown RBP6.9□□□□□ -1.3
CSDE1-208ENST00000524652 KLF16Q9BXK1 252 aaPredicted RBP6.9□□□□□ -1.3
CSDE1-208ENST00000524652 MAP4K5Q9Y4K4 846 aa6.9□□□□□ -1.3
CSDE1-208ENST00000524652 WFS1O76024 890 aa6.89□□□□□ -1.31
CSDE1-208ENST00000524652 WDR4P57081 412 aaKnown RBP6.89□□□□□ -1.31
CSDE1-208ENST00000524652 NFX1Q12986 1120 aaKnown RBP6.89□□□□□ -1.31
CSDE1-208ENST00000524652 ARID5BQ14865 1188 aa6.89□□□□□ -1.31
CSDE1-208ENST00000524652 ZC3H4Q9UPT8 1303 aaKnown RBP6.88□□□□□ -1.31
CSDE1-208ENST00000524652 PROCA1Q8NCQ7 364 aaPredicted RBP6.88□□□□□ -1.31
CSDE1-208ENST00000524652 GOPCQ9HD26 462 aa6.88□□□□□ -1.31
CSDE1-208ENST00000524652 MAGEB6P1A0A0J9YX57 407 aa6.87□□□□□ -1.31
CSDE1-208ENST00000524652 NR3C2P08235 984 aa6.87□□□□□ -1.31
CSDE1-208ENST00000524652 GRM5P41594 1212 aa6.87□□□□□ -1.31
CSDE1-208ENST00000524652 FBXO31Q5XUX0 539 aaPredicted RBP6.87□□□□□ -1.31
CSDE1-208ENST00000524652 MRPL14Q6P1L8 145 aaKnown RBP6.87□□□□□ -1.31
CSDE1-208ENST00000524652 PDXDC2PQ6P474 469 aa6.87□□□□□ -1.31
CSDE1-208ENST00000524652 LRRN4Q8WUT4 740 aa6.87□□□□□ -1.31
CSDE1-208ENST00000524652 FKBPLQ9UIM3 349 aa6.87□□□□□ -1.31
CSDE1-208ENST00000524652 ATP1B4Q9UN42 357 aaPredicted RBP6.87□□□□□ -1.31
CSDE1-208ENST00000524652 TERTO14746 1132 aaKnown RBP6.86□□□□□ -1.31
CSDE1-208ENST00000524652 ZIC2O95409 532 aaPredicted RBP6.86□□□□□ -1.31
CSDE1-208ENST00000524652 ZFP42Q96MM3 310 aa6.86□□□□□ -1.31
CSDE1-208ENST00000524652 FSHRP23945 695 aa6.85□□□□□ -1.31
CSDE1-208ENST00000524652 SCARF1Q14162 830 aa6.85□□□□□ -1.31
CSDE1-208ENST00000524652 ERFEQ4G0M1 354 aa6.85□□□□□ -1.31
CSDE1-208ENST00000524652 VASH1Q7L8A9 365 aaPredicted RBP6.85□□□□□ -1.31
CSDE1-208ENST00000524652 ITPKCQ96DU7 683 aa6.85□□□□□ -1.31
CSDE1-208ENST00000524652 CARD14Q9BXL6 1004 aa6.85□□□□□ -1.31
CSDE1-208ENST00000524652 AP1G2O75843 785 aa6.84□□□□□ -1.31
CSDE1-208ENST00000524652 NR6A1Q15406 480 aa6.84□□□□□ -1.31
CSDE1-208ENST00000524652 NPAS3Q8IXF0 933 aa6.84□□□□□ -1.31
CSDE1-208ENST00000524652 ARHGAP9Q9BRR9 750 aa6.84□□□□□ -1.31
CSDE1-208ENST00000524652 ZFAND3Q9H8U3 227 aa6.84□□□□□ -1.31
CSDE1-208ENST00000524652 NXF1Q9UBU9 619 aaKnown RBP6.84□□□□□ -1.31
CSDE1-208ENST00000524652 CDV3Q9UKY7 258 aaKnown RBP6.84□□□□□ -1.31
CSDE1-208ENST00000524652 WIPF1O43516 503 aa6.83□□□□□ -1.32
CSDE1-208ENST00000524652 USP17L8P0C7I0 530 aa6.83□□□□□ -1.32
CSDE1-208ENST00000524652 RFC5P40937 340 aa6.83□□□□□ -1.32
CSDE1-208ENST00000524652 PNMA1Q8ND90 353 aa6.83□□□□□ -1.32
CSDE1-208ENST00000524652 GPSM3Q9Y4H4 160 aa6.83□□□□□ -1.32
CSDE1-208ENST00000524652 NEUROD2Q15784 382 aa6.82□□□□□ -1.32
CSDE1-208ENST00000524652 CCDC116Q8IYX3 515 aa6.82□□□□□ -1.32
CSDE1-208ENST00000524652 MEIOBQ8N635 442 aa6.82□□□□□ -1.32
CSDE1-208ENST00000524652 SLC10A4Q96EP9 437 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms