RNA–Protein interactions for RNA: ENST00000522987.1

MRPS28-209, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 3

Gene MRPS28, Length 487 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-209ENST00000522987 ATP7BP35670 1465 aa22.49■■□□□ 1.19
MRPS28-209ENST00000522987 FAM98CQ17RN3 349 aaKnown RBP22.48■■□□□ 1.19
MRPS28-209ENST00000522987 NUTM2GQ5VZR2 741 aa22.48■■□□□ 1.19
MRPS28-209ENST00000522987 CCDC125Q86Z20 511 aa22.48■■□□□ 1.19
MRPS28-209ENST00000522987 NUDT16Q96DE0 195 aaKnown RBP22.48■■□□□ 1.19
MRPS28-209ENST00000522987 PHRF1Q9P1Y6 1649 aaKnown RBP22.48■■□□□ 1.19
MRPS28-209ENST00000522987 BLMP54132 1417 aaPredicted RBP22.48■■□□□ 1.19
MRPS28-209ENST00000522987 TOPAZ1Q8N9V7 1692 aa22.46■■□□□ 1.19
MRPS28-209ENST00000522987 KIAA1210Q9ULL0 1709 aa22.46■■□□□ 1.19
MRPS28-209ENST00000522987 KRT27Q7Z3Y8 459 aa22.46■■□□□ 1.19
MRPS28-209ENST00000522987 CDK19Q9BWU1 502 aa22.46■■□□□ 1.19
MRPS28-209ENST00000522987 HRCP23327 699 aa22.45■■□□□ 1.18
MRPS28-209ENST00000522987 SF3B2Q13435 895 aaKnown RBP22.44■■□□□ 1.18
MRPS28-209ENST00000522987 NBPF1Q3BBV0 1214 aa22.44■■□□□ 1.18
MRPS28-209ENST00000522987 FAM182BQ5T319 152 aa22.44■■□□□ 1.18
MRPS28-209ENST00000522987 CHRNA2Q15822 529 aa22.43■■□□□ 1.18
MRPS28-209ENST00000522987 STAC3Q96MF2 364 aa22.43■■□□□ 1.18
MRPS28-209ENST00000522987 PRDM11Q9NQV5 511 aa22.43■■□□□ 1.18
MRPS28-209ENST00000522987 ONECUT3O60422 494 aaPredicted RBP22.41■■□□□ 1.18
MRPS28-209ENST00000522987 ZC3H6P61129 1189 aaKnown RBP22.4■■□□□ 1.18
MRPS28-209ENST00000522987 QRICH2Q9H0J4 1663 aa22.39■■□□□ 1.18
MRPS28-209ENST00000522987 KIAA0232Q92628 1395 aa22.39■■□□□ 1.18
MRPS28-209ENST00000522987 STRN4Q9NRL3 753 aa22.39■■□□□ 1.17
MRPS28-209ENST00000522987 ACEP12821 1306 aa22.38■■□□□ 1.17
MRPS28-209ENST00000522987 RGPD1P0DJD0 1748 aa22.37■■□□□ 1.17
MRPS28-209ENST00000522987 THSD7AQ9UPZ6 1657 aa22.36■■□□□ 1.17
MRPS28-209ENST00000522987 SPATA31A5Q5VU36 1347 aa22.36■■□□□ 1.17
MRPS28-209ENST00000522987 SPATA31A7Q8IWB4 1347 aa22.36■■□□□ 1.17
MRPS28-209ENST00000522987 NBPF8Q3BBV2 869 aa22.35■■□□□ 1.17
MRPS28-209ENST00000522987 NRKQ7Z2Y5 1582 aa22.34■■□□□ 1.17
MRPS28-209ENST00000522987 SRPK2P78362 688 aaKnown RBP22.34■■□□□ 1.17
MRPS28-209ENST00000522987 USP35Q9P2H5 1018 aa22.34■■□□□ 1.17
MRPS28-209ENST00000522987 SRCAPQ6ZRS2 3230 aa22.33■■□□□ 1.17
MRPS28-209ENST00000522987 CABP2Q9NPB3 220 aa22.33■■□□□ 1.17
MRPS28-209ENST00000522987 CCDC61Q9Y6R9 512 aa22.33■■□□□ 1.17
MRPS28-209ENST00000522987 TNS1Q9HBL0 1735 aaKnown RBP22.33■■□□□ 1.17
MRPS28-209ENST00000522987 POLR3AO14802 1390 aaPredicted RBP22.33■■□□□ 1.17
MRPS28-209ENST00000522987 PSDA5PKW4 1024 aaPredicted RBP22.32■■□□□ 1.16
MRPS28-209ENST00000522987 ABTB2Q8N961 1025 aa22.31■■□□□ 1.16
MRPS28-209ENST00000522987 PPIP5K1Q6PFW1 1433 aa22.31■■□□□ 1.16
MRPS28-209ENST00000522987 CENPJQ9HC77 1338 aaPredicted RBP22.31■■□□□ 1.16
MRPS28-209ENST00000522987 BAG6P46379 1132 aa22.3■■□□□ 1.16
MRPS28-209ENST00000522987 EN1Q05925 392 aaPredicted RBP22.3■■□□□ 1.16
MRPS28-209ENST00000522987 SPATA31A1Q5TZJ5 1347 aa22.3■■□□□ 1.16
MRPS28-209ENST00000522987 PLEKHG3A1L390 1219 aa22.29■■□□□ 1.16
MRPS28-209ENST00000522987 ZBTB7CA1YPR0 619 aa22.29■■□□□ 1.16
MRPS28-209ENST00000522987 SIN3AQ96ST3 1273 aa22.29■■□□□ 1.16
MRPS28-209ENST00000522987 CAMTA1Q9Y6Y1 1673 aa22.28■■□□□ 1.16
MRPS28-209ENST00000522987 EVA1CP58658 441 aa22.28■■□□□ 1.16
MRPS28-209ENST00000522987 TRPM1Q7Z4N2 1603 aa22.28■■□□□ 1.16
MRPS28-209ENST00000522987 L3MBTL2Q969R5 705 aa22.27■■□□□ 1.16
MRPS28-209ENST00000522987 NEUROD1Q13562 356 aa22.26■■□□□ 1.15
MRPS28-209ENST00000522987 LMO7Q8WWI1 1683 aa22.26■■□□□ 1.15
MRPS28-209ENST00000522987 SSH2Q76I76 1423 aa22.25■■□□□ 1.15
MRPS28-209ENST00000522987 LARP1Q6PKG0 1096 aaKnown RBP22.24■■□□□ 1.15
MRPS28-209ENST00000522987 TRIM37O94972 964 aa22.23■■□□□ 1.15
MRPS28-209ENST00000522987 CABP1Q9NZU7 370 aa22.23■■□□□ 1.15
MRPS28-209ENST00000522987 USP19O94966 1318 aa22.22■■□□□ 1.15
MRPS28-209ENST00000522987 RGPD5Q99666 1765 aa22.22■■□□□ 1.15
MRPS28-209ENST00000522987 EZH2Q15910 746 aaKnown RBP22.21■■□□□ 1.15
MRPS28-209ENST00000522987 NLRP13Q86W25 1043 aa22.21■■□□□ 1.15
MRPS28-209ENST00000522987 LRP5O75197 1615 aa22.2■■□□□ 1.15
MRPS28-209ENST00000522987 PIK3C2AO00443 1686 aa22.2■■□□□ 1.15
MRPS28-209ENST00000522987 GCP02774 474 aa22.2■■□□□ 1.14
MRPS28-209ENST00000522987 AKAP12Q02952 1782 aa22.18■■□□□ 1.14
MRPS28-209ENST00000522987 USP6P35125 1406 aa22.18■■□□□ 1.14
MRPS28-209ENST00000522987 R3HDM1Q15032 1099 aaKnown RBP22.18■■□□□ 1.14
MRPS28-209ENST00000522987 CPDO75976 1380 aa22.17■■□□□ 1.14
MRPS28-209ENST00000522987 NLRP6P59044 892 aa22.17■■□□□ 1.14
MRPS28-209ENST00000522987 PDE3BQ13370 1112 aa22.17■■□□□ 1.14
MRPS28-209ENST00000522987 FAM196AQ6ZSG2 479 aa22.16■■□□□ 1.14
MRPS28-209ENST00000522987 COL5A2P05997 1499 aaPredicted RBP22.15■■□□□ 1.14
MRPS28-209ENST00000522987 ROCK2O75116 1388 aaKnown RBP22.15■■□□□ 1.14
MRPS28-209ENST00000522987 PARP4Q9UKK3 1724 aaKnown RBP22.15■■□□□ 1.14
MRPS28-209ENST00000522987 SOX12O15370 315 aa22.15■■□□□ 1.14
MRPS28-209ENST00000522987 APBA3O96018 575 aa22.15■■□□□ 1.14
MRPS28-209ENST00000522987 TCP11L2Q8N4U5 519 aa22.15■■□□□ 1.14
MRPS28-209ENST00000522987 EVC2Q86UK5 1308 aa22.14■■□□□ 1.14
MRPS28-209ENST00000522987 BARGINQ6ZT62 677 aa22.14■■□□□ 1.13
MRPS28-209ENST00000522987 COL18A1P39060 1754 aa22.14■■□□□ 1.13
MRPS28-209ENST00000522987 SLIT3O75094 1523 aa22.13■■□□□ 1.13
MRPS28-209ENST00000522987 NUP188Q5SRE5 1749 aa22.13■■□□□ 1.13
MRPS28-209ENST00000522987 RREB1Q92766 1687 aa22.13■■□□□ 1.13
MRPS28-209ENST00000522987 WNK3Q9BYP7 1800 aa22.13■■□□□ 1.13
MRPS28-209ENST00000522987 DISP2A7MBM2 1401 aa22.12■■□□□ 1.13
MRPS28-209ENST00000522987 SBF2Q86WG5 1849 aa22.11■■□□□ 1.13
MRPS28-209ENST00000522987 CAMKK2Q96RR4 588 aa22.11■■□□□ 1.13
MRPS28-209ENST00000522987 LRRC37A3O60309 1634 aa22.1■■□□□ 1.13
MRPS28-209ENST00000522987 CRB1P82279 1406 aa22.09■■□□□ 1.13
MRPS28-209ENST00000522987 TOM1L2Q6ZVM7 507 aa22.07■■□□□ 1.12
MRPS28-209ENST00000522987 BRD4O60885 1362 aaPredicted RBP22.07■■□□□ 1.12
MRPS28-209ENST00000522987 TTC21BQ7Z4L5 1316 aa22.06■■□□□ 1.12
MRPS28-209ENST00000522987 MON2Q7Z3U7 1717 aa22.06■■□□□ 1.12
MRPS28-209ENST00000522987 AXIN2Q9Y2T1 843 aa22.06■■□□□ 1.12
MRPS28-209ENST00000522987 PEAK1Q9H792 1746 aa22.06■■□□□ 1.12
MRPS28-209ENST00000522987 AATKQ6ZMQ8 1374 aa22.05■■□□□ 1.12
MRPS28-209ENST00000522987 THRAP3Q9Y2W1 955 aaKnown RBP22.05■■□□□ 1.12
MRPS28-209ENST00000522987 CPSF1Q10570 1443 aaKnown RBP22.04■■□□□ 1.12
MRPS28-209ENST00000522987 KTN1Q86UP2 1357 aaKnown RBP22.02■■□□□ 1.12
MRPS28-209ENST00000522987 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.02■■□□□ 1.127e-7■■□□□ 13.8
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms