RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 USP6P35125 1406 aa21.21■□□□□ 0.99
LSM1-203ENST00000520755 CPSF1Q10570 1443 aaKnown RBP21.21■□□□□ 0.99
LSM1-203ENST00000520755 HDGFL2Q7Z4V5 671 aaPredicted RBP21.2■□□□□ 0.98
LSM1-203ENST00000520755 SPATA31A3Q5VYP0 1347 aa21.2■□□□□ 0.98
LSM1-203ENST00000520755 KTN1Q86UP2 1357 aaKnown RBP21.2■□□□□ 0.98
LSM1-203ENST00000520755 ZNF692Q9BU19 519 aaPredicted RBP21.19■□□□□ 0.98
LSM1-203ENST00000520755 TERF2IPQ9NYB0 399 aa21.19■□□□□ 0.98
LSM1-203ENST00000520755 A0A1W2PP64 1363 aa21.19■□□□□ 0.98
LSM1-203ENST00000520755 PNPLA6Q8IY17 1366 aa21.19■□□□□ 0.98
LSM1-203ENST00000520755 COL22A1Q8NFW1 1626 aaPredicted RBP21.18■□□□□ 0.98
LSM1-203ENST00000520755 ANKRD26Q9UPS8 1709 aa21.18■□□□□ 0.98
LSM1-203ENST00000520755 ANKRD36BQ8N2N9 1353 aa21.18■□□□□ 0.98
LSM1-203ENST00000520755 MARF1Q9Y4F3 1742 aaKnown RBP21.18■□□□□ 0.98
LSM1-203ENST00000520755 PLEKHG5O94827 1062 aa21.16■□□□□ 0.98
LSM1-203ENST00000520755 ARHGEF10O15013 1369 aa21.15■□□□□ 0.98
LSM1-203ENST00000520755 PIK3C2AO00443 1686 aa21.15■□□□□ 0.98
LSM1-203ENST00000520755 BRD4O60885 1362 aaPredicted RBP21.14■□□□□ 0.98
LSM1-203ENST00000520755 DDX10Q13206 875 aaKnown RBP21.14■□□□□ 0.97
LSM1-203ENST00000520755 ABCA3Q99758 1704 aa21.14■□□□□ 0.97
LSM1-203ENST00000520755 USP54Q70EL1 1684 aa21.14■□□□□ 0.97
LSM1-203ENST00000520755 SSH2Q76I76 1423 aa21.13■□□□□ 0.97
LSM1-203ENST00000520755 SPATA31A6Q5VVP1 1343 aa21.12■□□□□ 0.97
LSM1-203ENST00000520755 TTC21BQ7Z4L5 1316 aa21.12■□□□□ 0.97
LSM1-203ENST00000520755 NUTM2BA6NNL0 878 aaPredicted RBP21.12■□□□□ 0.97
LSM1-203ENST00000520755 NUTM2EB1AL46 878 aaPredicted RBP21.12■□□□□ 0.97
LSM1-203ENST00000520755 NUTM2GQ5VZR2 741 aa21.12■□□□□ 0.97
LSM1-203ENST00000520755 NUTM2AQ8IVF1 878 aaPredicted RBP21.12■□□□□ 0.97
LSM1-203ENST00000520755 ABTB2Q8N961 1025 aa21.12■□□□□ 0.97
LSM1-203ENST00000520755 EDC4Q6P2E9 1401 aaKnown RBP21.12■□□□□ 0.97
LSM1-203ENST00000520755 NSD3Q9BZ95 1437 aa21.12■□□□□ 0.97
LSM1-203ENST00000520755 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.11■□□□□ 0.97
LSM1-203ENST00000520755 PANK3Q9H999 370 aa21.11■□□□□ 0.97
LSM1-203ENST00000520755 CRYBG1Q9Y4K1 1723 aa21.11■□□□□ 0.97
LSM1-203ENST00000520755 CARD14Q9BXL6 1004 aa21.1■□□□□ 0.97
LSM1-203ENST00000520755 MED1Q15648 1581 aaPredicted RBP21.1■□□□□ 0.97
LSM1-203ENST00000520755 TTC21AQ8NDW8 1320 aa21.09■□□□□ 0.97
LSM1-203ENST00000520755 LRP6O75581 1613 aa21.09■□□□□ 0.97
LSM1-203ENST00000520755 PHRF1Q9P1Y6 1649 aaKnown RBP21.09■□□□□ 0.97
LSM1-203ENST00000520755 CABLES1Q8TDN4 633 aa21.09■□□□□ 0.97
LSM1-203ENST00000520755 PER1O15534 1290 aaPredicted RBP21.07■□□□□ 0.96
LSM1-203ENST00000520755 HAP1P54257 671 aaPredicted RBP21.07■□□□□ 0.96
LSM1-203ENST00000520755 NME9Q86XW9 330 aa21.06■□□□□ 0.96
LSM1-203ENST00000520755 NLRP6P59044 892 aa21.05■□□□□ 0.96
LSM1-203ENST00000520755 ADAMTS2O95450 1211 aa21.04■□□□□ 0.96
LSM1-203ENST00000520755 MEX3CQ5U5Q3 659 aaKnown RBP21.04■□□□□ 0.96
LSM1-203ENST00000520755 NLRP13Q86W25 1043 aa21.04■□□□□ 0.96
LSM1-203ENST00000520755 ZRANB1Q9UGI0 708 aa21.04■□□□□ 0.96
LSM1-203ENST00000520755 USP19O94966 1318 aa21.01■□□□□ 0.95
LSM1-203ENST00000520755 SLIT3O75094 1523 aa21■□□□□ 0.95
LSM1-203ENST00000520755 AMER1Q5JTC6 1135 aaPredicted RBP21■□□□□ 0.95
LSM1-203ENST00000520755 USP31Q70CQ4 1352 aa20.99■□□□□ 0.95
LSM1-203ENST00000520755 OVOS2A0A0J9YW53 1432 aa20.98■□□□□ 0.95
LSM1-203ENST00000520755 OVOS2Q6IE36 1432 aa20.98■□□□□ 0.95
LSM1-203ENST00000520755 SOX12O15370 315 aa20.98■□□□□ 0.95
LSM1-203ENST00000520755 NPC1L1Q9UHC9 1359 aa20.97■□□□□ 0.95
LSM1-203ENST00000520755 FYB1O15117 783 aa20.97■□□□□ 0.95
LSM1-203ENST00000520755 C8orf37Q96NL8 207 aa20.97■□□□□ 0.95
LSM1-203ENST00000520755 GGNBP2Q9H3C7 697 aa20.97■□□□□ 0.95
LSM1-203ENST00000520755 CGNL1Q0VF96 1302 aa20.97■□□□□ 0.95
LSM1-203ENST00000520755 GCP02774 474 aa20.96■□□□□ 0.95
LSM1-203ENST00000520755 COG3Q96JB2 828 aa20.96■□□□□ 0.95
LSM1-203ENST00000520755 KNSTRNQ9Y448 316 aa20.96■□□□□ 0.95
LSM1-203ENST00000520755 NSD2O96028 1365 aa20.96■□□□□ 0.95
LSM1-203ENST00000520755 PLCH1Q4KWH8 1693 aa20.96■□□□□ 0.95
LSM1-203ENST00000520755 MAP2P11137 1827 aaKnown RBP20.95■□□□□ 0.94
LSM1-203ENST00000520755 ZC3H6P61129 1189 aaKnown RBP20.95■□□□□ 0.94
LSM1-203ENST00000520755 LTN1O94822 1766 aa20.95■□□□□ 0.94
LSM1-203ENST00000520755 PHF23Q9BUL5 403 aaPredicted RBP20.94■□□□□ 0.94
LSM1-203ENST00000520755 COL14A1Q05707 1796 aaKnown RBP20.94■□□□□ 0.94
LSM1-203ENST00000520755 KIAA0232Q92628 1395 aa20.94■□□□□ 0.94
LSM1-203ENST00000520755 NFAT5O94916 1531 aa20.94■□□□□ 0.94
LSM1-203ENST00000520755 ZBTB7CA1YPR0 619 aa20.93■□□□□ 0.94
LSM1-203ENST00000520755 DIEXFQ68CQ4 756 aaKnown RBP20.93■□□□□ 0.94
LSM1-203ENST00000520755 KCNH5Q8NCM2 988 aa20.93■□□□□ 0.94
LSM1-203ENST00000520755 NGLY1Q96IV0 654 aa20.93■□□□□ 0.94
LSM1-203ENST00000520755 PRDM11Q9NQV5 511 aa20.92■□□□□ 0.94
LSM1-203ENST00000520755 PARD3Q8TEW0 1356 aa20.92■□□□□ 0.94
LSM1-203ENST00000520755 NWD2Q9ULI1 1742 aa20.9■□□□□ 0.94
LSM1-203ENST00000520755 AFF2P51816 1311 aa20.9■□□□□ 0.94
LSM1-203ENST00000520755 FAM83GA6ND36 823 aa20.9■□□□□ 0.94
LSM1-203ENST00000520755 CHRNA2Q15822 529 aa20.9■□□□□ 0.94
LSM1-203ENST00000520755 CC2D1BQ5T0F9 858 aaKnown RBP20.9■□□□□ 0.94
LSM1-203ENST00000520755 CPDO75976 1380 aa20.89■□□□□ 0.93
LSM1-203ENST00000520755 RGPD5Q99666 1765 aa20.89■□□□□ 0.93
LSM1-203ENST00000520755 PEAK1Q9H792 1746 aa20.89■□□□□ 0.93
LSM1-203ENST00000520755 CNGB1Q14028 1251 aaPredicted RBP20.87■□□□□ 0.93
LSM1-203ENST00000520755 SLIT2O94813 1529 aa20.87■□□□□ 0.93
LSM1-203ENST00000520755 COL18A1P39060 1754 aa20.87■□□□□ 0.93
LSM1-203ENST00000520755 NRAPQ86VF7 1730 aa20.87■□□□□ 0.93
LSM1-203ENST00000520755 LMO7Q8WWI1 1683 aa20.86■□□□□ 0.93
LSM1-203ENST00000520755 FBLN1P23142 703 aa20.86■□□□□ 0.93
LSM1-203ENST00000520755 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.86■□□□□ 0.93
LSM1-203ENST00000520755 ARHGEF25Q86VW2 580 aa20.85■□□□□ 0.93
LSM1-203ENST00000520755 FNBP4Q8N3X1 1017 aaPredicted RBP20.85■□□□□ 0.93
LSM1-203ENST00000520755 PRKRIP1Q9H875 184 aaPredicted RBP20.85■□□□□ 0.93
LSM1-203ENST00000520755 BTG4Q9NY30 223 aa20.85■□□□□ 0.93
LSM1-203ENST00000520755 USP21Q9UK80 565 aa20.85■□□□□ 0.93
LSM1-203ENST00000520755 TNNT2P45379 298 aaPredicted RBP20.84■□□□□ 0.93
LSM1-203ENST00000520755 BCL9LQ86UU0 1499 aa20.83■□□□□ 0.93
LSM1-203ENST00000520755 MORC1Q86VD1 984 aa20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms