RNA–Protein interactions for RNA: ENST00000520493.1

SQLE-204, Transcript of squalene epoxidase, humanhuman

TSL 3

Gene SQLE, Length 737 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-204ENST00000520493 DIXDC1Q155Q3 683 aa9.18□□□□□ -0.94
SQLE-204ENST00000520493 MRPL14Q6P1L8 145 aaKnown RBP9.18□□□□□ -0.94
SQLE-204ENST00000520493 PDE4DQ08499 809 aa9.17□□□□□ -0.94
SQLE-204ENST00000520493 BEGAINQ9BUH8 593 aa9.17□□□□□ -0.94
SQLE-204ENST00000520493 IGHA1P01876 353 aa9.15□□□□□ -0.94
SQLE-204ENST00000520493 FDX1P10109 184 aa9.14□□□□□ -0.95
SQLE-204ENST00000520493 IRS1P35568 1242 aa9.14□□□□□ -0.95
SQLE-204ENST00000520493 SPIRE2Q8WWL2 714 aa9.14□□□□□ -0.95
SQLE-204ENST00000520493 HLA-CQ95604 372 aa9.14□□□□□ -0.95
SQLE-204ENST00000520493 DNMT3AQ9Y6K1 912 aaPredicted RBP9.14□□□□□ -0.95
SQLE-204ENST00000520493 PPFIA3O75145 1194 aa9.13□□□□□ -0.95
SQLE-204ENST00000520493 MS4A1P11836 297 aa9.12□□□□□ -0.95
SQLE-204ENST00000520493 GUCA2AQ02747 115 aa9.12□□□□□ -0.95
SQLE-204ENST00000520493 CNTNAP3BQ96NU0 1288 aa9.12□□□□□ -0.95
SQLE-204ENST00000520493 KRTAP4-8Q9BYQ9 185 aa9.12□□□□□ -0.95
SQLE-204ENST00000520493 CNTNAP3Q9BZ76 1288 aa9.12□□□□□ -0.95
SQLE-204ENST00000520493 MAN1A2O60476 641 aa9.11□□□□□ -0.95
SQLE-204ENST00000520493 TBC1D2Q9BYX2 928 aa9.11□□□□□ -0.95
SQLE-204ENST00000520493 C6orf229H3BNL8 230 aa9.1□□□□□ -0.95
SQLE-204ENST00000520493 KRT76Q01546 638 aa9.1□□□□□ -0.95
SQLE-204ENST00000520493 PTCRAQ6ISU1 281 aaPredicted RBP9.1□□□□□ -0.95
SQLE-204ENST00000520493 RETREG3Q86VR2 466 aa9.1□□□□□ -0.95
SQLE-204ENST00000520493 MOXD2PA6NHM9 499 aa9.09□□□□□ -0.95
SQLE-204ENST00000520493 TLL2Q9Y6L7 1015 aa9.09□□□□□ -0.95
SQLE-204ENST00000520493 NDUFV2P19404 249 aa9.08□□□□□ -0.96
SQLE-204ENST00000520493 GJA5P36382 358 aa9.08□□□□□ -0.96
SQLE-204ENST00000520493 WDR4P57081 412 aaKnown RBP9.08□□□□□ -0.96
SQLE-204ENST00000520493 SH3BP2P78314 561 aa9.08□□□□□ -0.96
SQLE-204ENST00000520493 NNTQ13423 1086 aa9.08□□□□□ -0.96
SQLE-204ENST00000520493 SVOPQ8N4V2 548 aa9.07□□□□□ -0.96
SQLE-204ENST00000520493 SPDYE5A6NIY4 337 aa9.06□□□□□ -0.96
SQLE-204ENST00000520493 TIMP2P16035 220 aa9.06□□□□□ -0.96
SQLE-204ENST00000520493 JUNDP17535 347 aa9.06□□□□□ -0.96
SQLE-204ENST00000520493 FOXK2Q01167 660 aa9.06□□□□□ -0.96
SQLE-204ENST00000520493 C6orf118Q5T5N4 469 aa9.06□□□□□ -0.96
SQLE-204ENST00000520493 GPR161Q8N6U8 529 aaKnown RBP9.06□□□□□ -0.96
SQLE-204ENST00000520493 SYMPKQ92797 1274 aaKnown RBP9.06□□□□□ -0.96
SQLE-204ENST00000520493 PCDHGC3Q9UN70 934 aa9.06□□□□□ -0.96
SQLE-204ENST00000520493 MTMR2Q13614 643 aa9.05□□□□□ -0.96
SQLE-204ENST00000520493 ZNF385CQ66K41 422 aaPredicted RBP9.05□□□□□ -0.96
SQLE-204ENST00000520493 RSBN1LQ6PCB5 846 aaPredicted RBP9.05□□□□□ -0.96
SQLE-204ENST00000520493 NUDT12Q9BQG2 462 aa9.05□□□□□ -0.96
SQLE-204ENST00000520493 RSPH6AQ9H0K4 717 aa9.04□□□□□ -0.96
SQLE-204ENST00000520493 PLEKHG3A1L390 1219 aa9.03□□□□□ -0.96
SQLE-204ENST00000520493 SPTLC1O15269 473 aa9.03□□□□□ -0.96
SQLE-204ENST00000520493 ADH1CP00326 375 aa9.03□□□□□ -0.96
SQLE-204ENST00000520493 MARSP56192 900 aaKnown RBP9.03□□□□□ -0.96
SQLE-204ENST00000520493 RIC3Q7Z5B4 369 aa9.03□□□□□ -0.96
SQLE-204ENST00000520493 ADAM23O75077 832 aa9.02□□□□□ -0.97
SQLE-204ENST00000520493 LINC01559Q495D7 138 aa9.02□□□□□ -0.97
SQLE-204ENST00000520493 DDRGK1Q96HY6 314 aa9.02□□□□□ -0.97
SQLE-204ENST00000520493 KDM4CQ9H3R0 1056 aa9.02□□□□□ -0.97
SQLE-204ENST00000520493 ZBTB3Q9H5J0 574 aa9.02□□□□□ -0.97
SQLE-204ENST00000520493 MYSM1Q5VVJ2 828 aa9.01□□□□□ -0.97
SQLE-204ENST00000520493 KANK3Q6NY19 840 aa9.01□□□□□ -0.97
SQLE-204ENST00000520493 PRR7Q8TB68 274 aa9.01□□□□□ -0.97
SQLE-204ENST00000520493 COL25A1Q9BXS0 654 aaPredicted RBP9.01□□□□□ -0.97
SQLE-204ENST00000520493 CSPP1Q1MSJ5 1256 aa9□□□□□ -0.97
SQLE-204ENST00000520493 PRPF38BQ5VTL8 546 aaKnown RBP9□□□□□ -0.97
SQLE-204ENST00000520493 WHAMMQ8TF30 809 aa9□□□□□ -0.97
SQLE-204ENST00000520493 PSMG3-AS1Q96PY0 264 aa9□□□□□ -0.97
SQLE-204ENST00000520493 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.99□□□□□ -0.97
SQLE-204ENST00000520493 GPBP1L1Q9HC44 474 aaPredicted RBP8.99□□□□□ -0.97
SQLE-204ENST00000520493 NUTM2BA6NNL0 878 aaPredicted RBP8.98□□□□□ -0.97
SQLE-204ENST00000520493 NUTM2EB1AL46 878 aaPredicted RBP8.98□□□□□ -0.97
SQLE-204ENST00000520493 CCNYL3P0C7X3 344 aa8.98□□□□□ -0.97
SQLE-204ENST00000520493 BMP2P12643 396 aa8.98□□□□□ -0.97
SQLE-204ENST00000520493 CLK2P49760 499 aaKnown RBP8.98□□□□□ -0.97
SQLE-204ENST00000520493 PTPRNQ16849 979 aa8.98□□□□□ -0.97
SQLE-204ENST00000520493 NUTM2DQ5VT03 806 aaPredicted RBP8.98□□□□□ -0.97
SQLE-204ENST00000520493 DESI1Q6ICB0 168 aa8.98□□□□□ -0.97
SQLE-204ENST00000520493 NUTM2AQ8IVF1 878 aaPredicted RBP8.98□□□□□ -0.97
SQLE-204ENST00000520493 BAP1Q92560 729 aa8.98□□□□□ -0.97
SQLE-204ENST00000520493 ZFAND3Q9H8U3 227 aa8.98□□□□□ -0.97
SQLE-204ENST00000520493 PCDHB15Q9Y5E8 787 aa8.98□□□□□ -0.97
SQLE-204ENST00000520493 HRCP23327 699 aa8.97□□□□□ -0.97
SQLE-204ENST00000520493 TUSC1Q2TAM9 212 aa8.97□□□□□ -0.97
SQLE-204ENST00000520493 KLF16Q9BXK1 252 aaPredicted RBP8.97□□□□□ -0.97
SQLE-204ENST00000520493 KRTAP9-2Q9BYQ4 174 aa8.97□□□□□ -0.97
SQLE-204ENST00000520493 MSTNO14793 375 aa8.96□□□□□ -0.98
SQLE-204ENST00000520493 ARHGEF15O94989 841 aa8.96□□□□□ -0.98
SQLE-204ENST00000520493 ZIC2O95409 532 aaPredicted RBP8.96□□□□□ -0.98
SQLE-204ENST00000520493 TPRNQ4KMQ1 711 aa8.96□□□□□ -0.98
SQLE-204ENST00000520493 SCARF2Q96GP6 870 aaPredicted RBP8.96□□□□□ -0.98
SQLE-204ENST00000520493 ATP1B4Q9UN42 357 aaPredicted RBP8.96□□□□□ -0.98
SQLE-204ENST00000520493 VARSP26640 1264 aaKnown RBP8.95□□□□□ -0.98
SQLE-204ENST00000520493 RNFT1Q5M7Z0 435 aa8.95□□□□□ -0.98
SQLE-204ENST00000520493 LIMD1Q9UGP4 676 aa8.95□□□□□ -0.98
SQLE-204ENST00000520493 DNMT3LQ9UJW3 386 aa8.95□□□□□ -0.98
SQLE-204ENST00000520493 KRTAP9-6A0A140TA67 174 aa8.94□□□□□ -0.98
SQLE-204ENST00000520493 NEUROD2Q15784 382 aa8.94□□□□□ -0.98
SQLE-204ENST00000520493 CABLES1Q8TDN4 633 aa8.94□□□□□ -0.98
SQLE-204ENST00000520493 TSC1Q92574 1164 aa8.94□□□□□ -0.98
SQLE-204ENST00000520493 UNC93B1Q9H1C4 597 aa8.94□□□□□ -0.98
SQLE-204ENST00000520493 POLR3EQ9NVU0 708 aa8.94□□□□□ -0.98
SQLE-204ENST00000520493 UPP2O95045 317 aa8.93□□□□□ -0.98
SQLE-204ENST00000520493 MPNDQ8N594 471 aa8.93□□□□□ -0.98
SQLE-204ENST00000520493 HELBQ8NG08 1087 aaPredicted RBP8.93□□□□□ -0.98
SQLE-204ENST00000520493 ITPKCQ96DU7 683 aa8.93□□□□□ -0.98
SQLE-204ENST00000520493 FAM117AQ9C073 453 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms