RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 TRIM32Q13049 653 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 MTMR2Q13614 643 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 PTPRNQ16849 979 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 NBPF20Q3BBV1 942 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 MORN1Q5T089 497 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 NUTM2DQ5VT03 806 aaPredicted RBP1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 RNF20Q5VTR2 975 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 KANK3Q6NY19 840 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 NUTM2AQ8IVF1 878 aaPredicted RBP1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 MPNDQ8N594 471 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 ZSCAN1Q8NBB4 408 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 SIRT1Q96EB6 747 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 TRIM47Q96LD4 638 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 TRERF1Q96PN7 1200 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 NUDT12Q9BQG2 462 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 TSEN34Q9BSV6 310 aaKnown RBP1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 ZBTB3Q9H5J0 574 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 NXF1Q9UBU9 619 aaKnown RBP1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 PHF24Q9UPV7 400 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 EMILIN1Q9Y6C2 1016 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 IRF6O14896 467 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 GDF9O60383 454 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 FDX1P10109 184 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 BMP2P12643 396 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 PTK2Q05397 1052 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 NEUROD1Q13562 356 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 ARID5BQ14865 1188 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 ZNF800Q2TB10 664 aaPredicted RBP eCLIP1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 TPRNQ4KMQ1 711 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 RC3H1Q5TC82 1133 aaKnown RBP1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 PRPF38BQ5VTL8 546 aaKnown RBP1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 BRICD5Q6PL45 260 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 ZBTB33Q86T24 672 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 CADPS2Q86UW7 1296 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 BEND7Q8N7W2 519 aaPredicted RBP1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 NKX2-3Q8TAU0 364 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 KCNV2Q8TDN2 545 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 TSC1Q92574 1164 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 SLC10A4Q96EP9 437 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 ATP13A2Q9NQ11 1180 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 NPDC1Q9NQX5 325 aaPredicted RBP1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 AAASQ9NRG9 546 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 TOR4AQ9NXH8 423 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 SLC27A5Q9Y2P5 690 aa1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 ZC3H4Q9UPT8 1303 aaKnown RBP1.08□□□□□ -2.24
RNU4-54P-201ENST00000516428 SEMA3EO15041 775 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 HOXA2O43364 376 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 DXOO77932 396 aaKnown RBP1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 CSB-PGBD3P0DP91 1061 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 CD46P15529 392 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 SSTR3P32745 418 aaPredicted RBP1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 WDR4P57081 412 aaKnown RBP1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 MDM2Q00987 491 aaPredicted RBP1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 KCNH2Q12809 1159 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 PUS10Q3MIT2 529 aaKnown RBP1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 TMEM259Q4ZIN3 620 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 MRPL14Q6P1L8 145 aaKnown RBP1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 LIAT1Q6ZQX7 453 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 SV2AQ7L0J3 742 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 VASH1Q7L8A9 365 aaPredicted RBP1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 PGBD3Q8N328 593 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 TMEM151AQ8N4L1 468 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 GALNT6Q8NCL4 622 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 DCAF11Q8TEB1 546 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 DDRGK1Q96HY6 314 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 MRGPRX2Q96LB1 330 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 AK7Q96M32 723 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 CDHR5Q9HBB8 845 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 LRRC4BQ9NT99 713 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 EVA1BQ9NVM1 165 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 NOP53Q9NZM5 478 aaKnown RBP1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 RBM19Q9Y4C8 960 aaKnown RBP1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 GPSM3Q9Y4H4 160 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 GTF3C3Q9Y5Q9 886 aa1.07□□□□□ -2.24
RNU4-54P-201ENST00000516428 TTLL8A6PVC2 850 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 PPEF1O14829 653 aaPredicted RBP1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 TLL1O43897 1013 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 MYCP01106 439 aaPredicted RBP1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 SLC10A3P09131 477 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 ARID4AP29374 1257 aaPredicted RBP1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 MLLT3P42568 568 aaPredicted RBP1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 MAP2K3P46734 347 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 NNTQ13423 1086 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 HIF1AQ16665 826 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 TUSC1Q2TAM9 212 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 DZIP3Q86Y13 1208 aaKnown RBP1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 HOMEZQ8IX15 550 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 SEPT12Q8IYM1 358 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 CCDC116Q8IYX3 515 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 SVOPQ8N4V2 548 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 ZNF511Q8NB15 262 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 NEDD1Q8NHV4 660 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 PRR7Q8TB68 274 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 NLRP3Q96P20 1036 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 NACC1Q96RE7 527 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 ARHGAP9Q9BRR9 750 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 UNC93B1Q9H1C4 597 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 NEUROD4Q9HD90 331 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 TSHZ2Q9NRE2 1034 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 PKD2L1Q9P0L9 805 aa1.06□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 122.1 ms